Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48501 * 109.47463 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46802 * 299.99364 * 3 2 1 6 6 H 1.48497 * 109.47293 * 59.99556 * 3 2 1 7 7 C 1.37877 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00141 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47080 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00298 * 89.33068 * 10 9 7 12 12 C 1.50707 * 109.47006 * 269.99843 * 11 10 9 13 13 C 1.38223 * 119.61771 * 94.72159 * 12 11 10 14 14 C 1.38632 * 119.15838 * 180.26018 * 13 12 11 15 15 C 1.38670 * 118.42052 * 0.02562 * 14 13 12 16 16 C 1.38174 * 119.16339 * 0.02562 * 15 14 13 17 17 N 1.31860 * 119.61415 * 274.99799 * 12 11 10 18 18 C 1.34780 * 119.99929 * 269.32206 * 10 9 7 19 19 O 1.21276 * 119.99984 * 173.21283 * 18 10 9 20 20 C 1.50704 * 120.00138 * 353.22222 * 18 10 9 21 21 H 1.09003 * 109.46936 * 48.61921 * 20 18 10 22 22 C 1.53000 * 109.46744 * 288.62456 * 20 18 10 23 23 C 1.53003 * 109.47005 * 179.97438 * 22 20 18 24 24 C 1.52994 * 109.47141 * 59.99940 * 23 22 20 25 25 C 1.53004 * 109.46892 * 299.99869 * 24 23 22 26 26 H 1.08996 * 109.47053 * 300.00082 * 25 24 23 27 27 C 1.53008 * 109.46880 * 179.97438 * 25 24 23 28 28 F 1.39897 * 109.47254 * 300.00232 * 27 25 24 29 29 F 1.39899 * 109.46863 * 60.00437 * 27 25 24 30 30 F 1.39904 * 109.46786 * 179.97438 * 27 25 24 31 31 C 1.52994 * 109.47278 * 168.62472 * 20 18 10 32 32 H 0.97003 * 119.99763 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.46637 * 59.99938 * 9 7 2 34 34 H 1.08997 * 109.47106 * 299.99966 * 9 7 2 35 35 H 1.08993 * 109.47603 * 150.00141 * 11 10 9 36 36 H 1.08999 * 109.47441 * 29.99365 * 11 10 9 37 37 H 1.07999 * 120.42101 * 0.26184 * 13 12 11 38 38 H 1.08005 * 120.78474 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.41339 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.61789 * 179.97438 * 16 15 14 41 41 H 1.09003 * 109.46967 * 299.99446 * 22 20 18 42 42 H 1.08996 * 109.47450 * 59.99542 * 22 20 18 43 43 H 1.09003 * 109.46812 * 299.99549 * 23 22 20 44 44 H 1.09002 * 109.47249 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.47100 * 180.02562 * 24 23 22 46 46 H 1.08996 * 109.47338 * 59.99776 * 24 23 22 47 47 H 1.09003 * 109.47151 * 299.99340 * 31 20 18 48 48 H 1.08996 * 109.47338 * 59.99540 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.6892 -4.1593 1.2709 12 6 3.9359 -3.4235 1.6899 13 6 3.8379 -2.3531 2.5590 14 6 4.9902 -1.6797 2.9338 15 6 6.2034 -2.1097 2.4178 16 6 6.2232 -3.1871 1.5530 17 7 5.1070 -3.8049 1.2190 18 6 2.6312 -4.1344 -1.1648 19 8 3.5094 -4.9707 -1.1689 20 6 2.0189 -3.6783 -2.4642 21 1 1.9931 -2.5890 -2.4910 22 6 0.5944 -4.2252 -2.5763 23 6 -0.0275 -3.7617 -3.8951 24 6 0.8114 -4.2804 -5.0647 25 6 2.2360 -3.7335 -4.9525 26 1 2.2101 -2.6442 -4.9789 27 6 3.0751 -4.2528 -6.1218 28 9 3.1083 -5.6510 -6.0873 29 9 2.5067 -3.8294 -7.3279 30 9 4.3776 -3.7523 -6.0196 31 6 2.8580 -4.1976 -3.6334 32 1 -0.4850 0.8401 -0.0004 33 1 0.6246 -2.5570 -0.8897 34 1 0.6239 -2.5567 0.8903 35 1 2.9165 -5.2181 1.1473 36 1 1.9221 -4.0393 2.0360 37 1 2.8758 -2.0453 2.9411 38 1 4.9440 -0.8395 3.6110 39 1 7.1211 -1.6087 2.6887 40 1 7.1640 -3.5279 1.1464 41 1 0.6203 -5.3146 -2.5494 42 1 -0.0034 -3.8553 -1.7433 43 1 -0.0534 -2.6723 -3.9215 44 1 -1.0422 -4.1516 -3.9752 45 1 0.3686 -3.9498 -6.0042 46 1 0.8374 -5.3698 -5.0382 47 1 3.8729 -3.8080 -3.5535 48 1 2.8839 -5.2869 -3.6065 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = -174.660183 kcal Electronic energy + Delta-G solvation = -35578.068716 eV Core-core repulsion = 30602.931898 eV Total energy + Delta-G solvation = -4975.136819 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.03394 -47.52423 -47.48370 -40.06379 -39.38898 -37.45037 -35.13918 -32.87396 -32.15469 -31.88345 -31.15207 -30.60197 -27.66043 -26.20187 -25.57549 -23.51180 -23.07249 -22.67168 -21.94922 -21.50203 -20.01773 -18.64845 -18.17584 -18.06965 -17.33548 -16.76693 -16.43535 -16.06805 -15.71213 -15.30012 -15.10136 -15.04933 -14.57056 -14.43478 -14.35172 -14.21360 -13.93285 -13.76040 -13.67220 -13.62140 -13.45616 -13.38734 -12.92713 -12.86974 -12.54739 -12.34755 -12.27835 -12.04751 -11.85658 -11.68768 -11.37511 -11.31778 -11.21688 -11.05184 -10.99222 -10.72098 -10.62506 -10.30107 -10.19743 -10.10206 -9.75170 -9.41495 -8.96672 -8.93134 -8.65879 -8.45021 -7.74882 -6.24626 -4.30006 1.53015 1.76456 2.83150 3.14623 3.24719 3.28954 3.42181 3.75286 3.88707 4.09305 4.14065 4.26830 4.45410 4.75970 4.79800 4.82307 5.03928 5.08968 5.18267 5.20767 5.26486 5.31801 5.40255 5.44354 5.45964 5.49987 5.60545 5.64664 5.81427 5.90645 5.95901 6.01562 6.09782 6.14477 6.17410 6.22934 6.27982 6.31363 6.44629 6.55957 6.60900 6.62260 6.72035 7.12627 7.15358 7.49908 7.71628 8.01068 8.30209 8.53342 8.76266 9.03934 9.37952 10.81775 Molecular weight = 370.16amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.003625 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.771420 B = 7722.367489 C = 8950.847528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.229 3.771 10 N -0.593 5.593 11 C 0.172 3.828 12 C 0.125 3.875 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.182 4.182 16 C 0.087 3.913 17 N -0.458 5.458 18 C 0.523 3.477 19 O -0.548 6.548 20 C -0.099 4.099 21 H 0.110 0.890 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.116 0.884 27 C 0.454 3.546 28 F -0.183 7.183 29 F -0.188 7.188 30 F -0.184 7.184 31 C -0.095 4.095 32 H 0.264 0.736 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -5.855 -3.492 7.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.110 3.890 10 N -0.324 5.324 11 C 0.048 3.952 12 C -0.015 4.015 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.202 4.202 16 C -0.071 4.071 17 N -0.167 5.167 18 C 0.310 3.690 19 O -0.426 6.426 20 C -0.120 4.120 21 H 0.128 0.872 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.152 4.152 26 H 0.134 0.866 27 C 0.400 3.600 28 F -0.165 7.165 29 F -0.169 7.169 30 F -0.165 7.165 31 C -0.133 4.133 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.165 -6.902 -4.092 8.311 hybrid contribution 0.720 2.177 0.400 2.328 sum 2.885 -4.725 -3.692 6.654 Atomic orbital electron populations 1.69912 1.05822 1.27078 1.50078 1.24861 0.94735 0.98938 0.94943 0.86607 0.80346 0.83790 0.77838 1.19769 1.20840 1.20852 1.21501 0.93510 0.90342 1.51354 0.92307 1.19660 0.87578 0.82683 0.99089 1.48141 1.45322 1.35348 1.03604 1.20087 0.90936 0.97317 0.86874 1.21654 0.93715 0.93957 0.92154 1.21988 0.99400 0.95633 0.98325 1.21492 0.92587 0.98544 0.98502 1.22027 0.98600 0.99237 1.00347 1.22640 0.96688 0.92881 0.94876 1.67588 0.98134 1.29809 1.21178 1.20301 0.82096 0.81257 0.85322 1.90657 1.30422 1.34227 1.87309 1.21169 0.95414 1.03521 0.91873 0.87179 1.21620 0.94362 1.00559 0.98532 1.21460 0.98395 1.01834 0.93193 1.21626 0.92207 1.01526 1.00065 1.22561 0.96095 1.03925 0.92579 0.86627 1.20703 0.79224 0.75685 0.84423 1.93157 1.96478 1.30197 1.96620 1.93153 1.84722 1.89880 1.49181 1.93181 1.39877 1.87289 1.96174 1.21370 0.99220 1.02461 0.90210 0.92639 0.93141 0.94829 0.89594 0.89564 0.84635 0.85504 0.85714 0.83664 0.91880 0.89715 0.90836 0.91056 0.90891 0.90720 0.90457 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.85 13.29 55.43 0.74 -22.11 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.53 -12.72 9.02 -34.44 -0.31 -13.03 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.23 4.91 4.68 -5.19 -0.02 4.88 16 10 N -0.59 -11.67 2.44 -176.44 -0.43 -12.10 16 11 C 0.17 3.11 5.71 -5.19 -0.03 3.08 16 12 C 0.12 2.33 6.36 -82.58 -0.52 1.81 16 13 C -0.13 -2.30 9.48 -39.44 -0.37 -2.68 16 14 C -0.09 -1.32 10.18 -39.28 -0.40 -1.72 16 15 C -0.18 -2.68 10.11 -39.45 -0.40 -3.08 16 16 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 17 N -0.46 -8.93 10.27 -9.47 -0.10 -9.02 16 18 C 0.52 10.35 6.89 -10.98 -0.08 10.28 16 19 O -0.55 -12.11 15.64 5.56 0.09 -12.02 16 20 C -0.10 -1.65 1.67 -91.77 -0.15 -1.81 16 21 H 0.11 2.04 7.31 -51.93 -0.38 1.66 16 22 C -0.11 -1.62 4.86 -26.73 -0.13 -1.75 16 23 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 24 C -0.12 -1.31 4.96 -26.73 -0.13 -1.44 16 25 C -0.13 -1.68 2.17 -90.59 -0.20 -1.88 16 26 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 27 C 0.45 5.98 2.69 37.16 0.10 6.08 16 28 F -0.18 -2.51 16.28 2.25 0.04 -2.47 16 29 F -0.19 -2.41 16.80 2.25 0.04 -2.37 16 30 F -0.18 -2.66 16.80 2.25 0.04 -2.62 16 31 C -0.09 -1.45 3.61 -26.71 -0.10 -1.55 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.05 1.08 4.44 -51.93 -0.23 0.85 16 34 H 0.03 0.75 7.90 -51.93 -0.41 0.34 16 35 H 0.09 1.56 7.53 -51.93 -0.39 1.17 16 36 H 0.09 1.35 7.80 -51.93 -0.41 0.95 16 37 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.15 2.00 8.06 -52.48 -0.42 1.58 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.31 5.94 -51.93 -0.31 1.00 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 46 H 0.07 0.82 7.80 -51.93 -0.41 0.42 16 47 H 0.08 1.29 7.80 -51.93 -0.41 0.89 16 48 H 0.08 1.29 7.64 -51.93 -0.40 0.89 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -28.85 400.20 -8.44 -37.29 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.66 Total: 5.97 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.20 Total: -1.47 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.21 Total: -43.23 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.11 Total: -7.47 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.85 -8.44 -37.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.367 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds