Wall clock time and date at job start Tue Mar 31 2020 06:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47265 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47476 * 119.99720 * 3 2 1 7 7 C 1.37873 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00710 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99820 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47725 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99853 * 95.72956 * 10 9 7 12 12 C 1.50700 * 109.47474 * 270.00656 * 11 10 9 13 13 C 1.38227 * 119.61718 * 95.00241 * 12 11 10 14 14 C 1.38632 * 119.15777 * 179.72583 * 13 12 11 15 15 C 1.38668 * 118.42353 * 359.97438 * 14 13 12 16 16 C 1.38182 * 119.16482 * 0.02562 * 15 14 13 17 17 N 1.31858 * 119.61553 * 274.72664 * 12 11 10 18 18 C 1.34773 * 120.00086 * 275.74250 * 10 9 7 19 19 O 1.21278 * 120.00228 * 175.44613 * 18 10 9 20 20 C 1.50703 * 119.99760 * 355.43942 * 18 10 9 21 21 H 1.08994 * 109.47330 * 4.81162 * 20 18 10 22 22 C 1.53004 * 109.46768 * 124.80872 * 20 18 10 23 23 C 1.52994 * 109.47412 * 60.00232 * 22 20 18 24 24 C 1.53008 * 109.47090 * 59.99758 * 23 22 20 25 25 C 1.53003 * 109.46959 * 299.99875 * 24 23 22 26 26 H 1.08999 * 109.47413 * 300.00524 * 25 24 23 27 27 C 1.52994 * 109.46905 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47395 * 60.00404 * 27 25 24 29 29 F 1.39902 * 109.47174 * 180.02562 * 27 25 24 30 30 F 1.39908 * 109.47485 * 300.00270 * 27 25 24 31 31 C 1.52997 * 109.46830 * 60.00370 * 25 24 23 32 32 H 0.96994 * 120.00203 * 359.97438 * 1 2 3 33 33 H 1.09004 * 109.47248 * 59.99840 * 9 7 2 34 34 H 1.09002 * 109.47628 * 299.99798 * 9 7 2 35 35 H 1.09005 * 109.46905 * 150.00907 * 11 10 9 36 36 H 1.08994 * 109.47200 * 30.01105 * 11 10 9 37 37 H 1.07993 * 120.41994 * 359.70120 * 13 12 11 38 38 H 1.08004 * 120.78289 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.42023 * 179.97438 * 15 14 13 40 40 H 1.07994 * 119.62168 * 180.02562 * 16 15 14 41 41 H 1.09007 * 109.47003 * 180.02562 * 22 20 18 42 42 H 1.08998 * 109.47235 * 299.99625 * 22 20 18 43 43 H 1.09000 * 109.47259 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.47147 * 299.99828 * 23 22 20 45 45 H 1.08998 * 109.47069 * 60.00022 * 24 23 22 46 46 H 1.08999 * 109.46743 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.46972 * 179.97438 * 31 25 24 48 48 H 1.08998 * 109.47477 * 59.99683 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5827 -4.2518 1.2629 12 6 3.7874 -3.5523 1.8378 13 6 3.6135 -2.5517 2.7755 14 6 4.7286 -1.9185 3.3023 15 6 5.9824 -2.3174 2.8647 16 6 6.0782 -3.3254 1.9243 17 7 4.9953 -3.9055 1.4445 18 6 2.7297 -4.0491 -1.1608 19 8 3.5790 -4.9147 -1.1541 20 6 2.2630 -3.4614 -2.4677 21 1 1.5668 -2.6460 -2.2714 22 6 3.4674 -2.9273 -3.2456 23 6 4.4447 -4.0717 -3.5212 24 6 3.7439 -5.1535 -4.3456 25 6 2.5396 -5.6876 -3.5676 26 1 2.8771 -6.1126 -2.6223 27 6 1.8392 -6.7698 -4.3916 28 9 2.7331 -7.8162 -4.6431 29 9 0.7377 -7.2577 -3.6805 30 9 1.4060 -6.2247 -5.6052 31 6 1.5623 -4.5432 -3.2921 32 1 -0.4850 0.8400 0.0004 33 1 0.6247 -2.5571 -0.8897 34 1 0.6241 -2.5568 0.8903 35 1 2.8230 -5.2995 1.0819 36 1 1.7536 -4.1856 1.9674 37 1 2.6215 -2.2667 3.0935 38 1 4.6231 -1.1337 4.0368 39 1 6.8729 -1.8458 3.2533 40 1 7.0511 -3.6422 1.5786 41 1 3.1298 -2.5018 -4.1907 42 1 3.9666 -2.1566 -2.6584 43 1 5.3025 -3.6914 -4.0759 44 1 4.7823 -4.4968 -2.5760 45 1 3.4064 -4.7284 -5.2908 46 1 4.4401 -5.9690 -4.5416 47 1 0.7041 -4.9237 -2.7381 48 1 1.2247 -4.1181 -4.2373 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:15 Heat of formation + Delta-G solvation = -166.607328 kcal Electronic energy + Delta-G solvation = -36084.886500 eV Core-core repulsion = 31110.098879 eV Total energy + Delta-G solvation = -4974.787621 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.94661 -47.42814 -47.41054 -40.27226 -39.55061 -37.03979 -35.03444 -32.88302 -32.06490 -31.80406 -31.33295 -30.51364 -27.71094 -26.17005 -25.50023 -23.42121 -23.10611 -22.67980 -21.87050 -21.46371 -20.34283 -18.44707 -18.07814 -17.78551 -17.39427 -16.75080 -16.44414 -16.13064 -15.78089 -15.29008 -15.15684 -14.94276 -14.60459 -14.43728 -14.27566 -14.13505 -13.86717 -13.59702 -13.58102 -13.56591 -13.28692 -13.17452 -12.97349 -12.78735 -12.52102 -12.38015 -12.11836 -11.91750 -11.77728 -11.61180 -11.58837 -11.37372 -11.30499 -11.05673 -10.99977 -10.82972 -10.59448 -10.25844 -10.03857 -9.84905 -9.73281 -9.45457 -8.99475 -8.76604 -8.66763 -8.40640 -7.77285 -6.24691 -4.31223 1.48317 1.71585 2.94792 3.17771 3.23818 3.25581 3.35663 3.79799 4.00193 4.19482 4.25971 4.28286 4.40373 4.71738 4.93586 4.96539 5.08741 5.12606 5.16094 5.22302 5.38130 5.42191 5.44287 5.50082 5.58551 5.62894 5.71531 5.77856 5.82232 5.91535 5.99632 6.12362 6.14245 6.17079 6.20673 6.28035 6.37185 6.51099 6.52529 6.57532 6.59123 6.64969 6.90351 7.08447 7.11641 7.46248 7.71336 7.98919 8.26380 8.47864 8.74619 9.01179 9.37010 10.81850 Molecular weight = 370.16amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.003763 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.734198 B = 7439.834761 C = 8879.166430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.236 3.764 10 N -0.591 5.591 11 C 0.170 3.830 12 C 0.125 3.875 13 C -0.136 4.136 14 C -0.083 4.083 15 C -0.182 4.182 16 C 0.087 3.913 17 N -0.457 5.457 18 C 0.525 3.475 19 O -0.544 6.544 20 C -0.106 4.106 21 H 0.118 0.882 22 C -0.099 4.099 23 C -0.131 4.131 24 C -0.103 4.103 25 C -0.139 4.139 26 H 0.138 0.862 27 C 0.450 3.550 28 F -0.188 7.188 29 F -0.187 7.187 30 F -0.188 7.188 31 C -0.100 4.100 32 H 0.266 0.734 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 -7.299 -1.630 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.116 3.884 10 N -0.322 5.322 11 C 0.045 3.955 12 C -0.014 4.014 13 C -0.156 4.156 14 C -0.109 4.109 15 C -0.202 4.202 16 C -0.070 4.070 17 N -0.166 5.166 18 C 0.314 3.686 19 O -0.424 6.424 20 C -0.127 4.127 21 H 0.136 0.864 22 C -0.137 4.137 23 C -0.168 4.168 24 C -0.141 4.141 25 C -0.158 4.158 26 H 0.156 0.844 27 C 0.396 3.604 28 F -0.169 7.169 29 F -0.168 7.168 30 F -0.169 7.169 31 C -0.138 4.138 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.536 -8.313 -2.264 10.241 hybrid contribution 0.184 1.921 0.561 2.009 sum 5.720 -6.392 -1.704 8.746 Atomic orbital electron populations 1.69892 1.05881 1.27395 1.49713 1.24869 0.94734 0.99001 0.94841 0.86679 0.79670 0.83045 0.78870 1.20131 1.21154 1.20238 1.21374 0.93330 0.90255 1.51843 0.92431 1.19514 0.87482 0.82738 0.98647 1.48246 1.44761 1.34995 1.04169 1.20122 0.92246 0.96707 0.86383 1.21640 0.93323 0.94085 0.92367 1.21984 0.99935 0.96166 0.97514 1.21494 0.92574 0.98203 0.98670 1.22031 0.98152 0.99753 1.00286 1.22644 0.97261 0.93306 0.93798 1.67580 0.98278 1.27445 1.23325 1.20367 0.80964 0.81896 0.85413 1.90476 1.31655 1.33185 1.87100 1.21316 0.99697 0.99119 0.92579 0.86422 1.21323 0.95083 0.97819 0.99432 1.21812 0.97345 0.95244 1.02382 1.21433 0.95252 0.99383 0.98036 1.22788 0.97327 0.94286 1.01394 0.84405 1.20946 0.77293 0.83242 0.78940 1.93145 1.68132 1.60987 1.94674 1.93158 1.56040 1.89343 1.78271 1.93139 1.90473 1.85591 1.47723 1.21439 0.96934 0.94357 1.01085 0.92456 0.94173 0.94530 0.89380 0.89600 0.84739 0.85494 0.85700 0.83642 0.91638 0.91252 0.92553 0.87735 0.91749 0.91436 0.90743 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 19.86 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -12.66 9.13 -34.44 -0.31 -12.98 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.24 5.07 4.84 -5.19 -0.03 5.05 16 10 N -0.59 -11.36 2.46 -176.43 -0.43 -11.80 16 11 C 0.17 2.96 5.72 -5.19 -0.03 2.93 16 12 C 0.13 2.24 6.36 -82.59 -0.53 1.72 16 13 C -0.14 -2.26 9.72 -39.44 -0.38 -2.65 16 14 C -0.08 -1.24 10.18 -39.28 -0.40 -1.64 16 15 C -0.18 -2.55 10.11 -39.44 -0.40 -2.95 16 16 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 17 N -0.46 -8.38 10.27 -9.47 -0.10 -8.48 16 18 C 0.52 9.85 6.28 -10.99 -0.07 9.78 16 19 O -0.54 -10.64 11.00 5.56 0.06 -10.58 16 20 C -0.11 -1.80 2.70 -91.77 -0.25 -2.05 16 21 H 0.12 2.22 5.33 -51.93 -0.28 1.94 16 22 C -0.10 -1.57 5.44 -26.73 -0.15 -1.71 16 23 C -0.13 -1.93 5.63 -26.73 -0.15 -2.08 16 24 C -0.10 -1.39 4.96 -26.73 -0.13 -1.52 16 25 C -0.14 -1.99 1.87 -90.62 -0.17 -2.16 16 26 H 0.14 2.23 5.69 -51.93 -0.30 1.93 16 27 C 0.45 6.30 2.69 37.15 0.10 6.40 16 28 F -0.19 -2.66 16.80 2.25 0.04 -2.63 16 29 F -0.19 -2.74 16.80 2.25 0.04 -2.70 16 30 F -0.19 -2.60 16.28 2.25 0.04 -2.56 16 31 C -0.10 -1.47 4.48 -26.73 -0.12 -1.59 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.04 0.90 6.15 -51.93 -0.32 0.58 16 34 H 0.04 0.82 7.83 -51.93 -0.41 0.41 16 35 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 36 H 0.09 1.31 7.76 -51.93 -0.40 0.91 16 37 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.82 5.34 -51.93 -0.28 1.54 16 45 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 46 H 0.07 0.86 7.80 -51.93 -0.41 0.46 16 47 H 0.07 1.10 7.80 -51.93 -0.41 0.69 16 48 H 0.08 1.08 7.80 -51.93 -0.41 0.67 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -27.07 394.07 -8.50 -35.57 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.49 Total: 7.45 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.30 Total: -2.68 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.21 Total: -42.64 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.06 Total: -10.58 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.11 Total: -7.89 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -27.07 -8.50 -35.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.040 kcal (2) G-P(sol) polarization free energy of solvation -27.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds