Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00287 * 2 1 4 4 H 1.48491 * 109.47078 * 270.00311 * 3 2 1 5 5 H 1.48506 * 109.46652 * 30.00081 * 3 2 1 6 6 H 1.48498 * 109.47141 * 149.99621 * 3 2 1 7 7 C 1.37882 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99991 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99736 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99688 * 263.79078 * 10 9 7 12 12 C 1.50705 * 109.46731 * 269.99704 * 11 10 9 13 13 C 1.38222 * 119.61775 * 94.73552 * 12 11 10 14 14 C 1.38632 * 119.16142 * 179.74997 * 13 12 11 15 15 C 1.38669 * 118.41619 * 0.50880 * 14 13 12 16 16 C 1.38183 * 119.16513 * 359.72703 * 15 14 13 17 17 N 1.31854 * 119.61783 * 274.99810 * 12 11 10 18 18 C 1.34776 * 120.00117 * 83.78559 * 10 9 7 19 19 O 1.21281 * 120.00044 * 184.43269 * 18 10 9 20 20 C 1.50699 * 119.99995 * 4.16051 * 18 10 9 21 21 H 1.09001 * 109.47182 * 355.68881 * 20 18 10 22 22 C 1.53006 * 109.46992 * 235.69115 * 20 18 10 23 23 C 1.52995 * 109.46970 * 299.99918 * 22 20 18 24 24 C 1.52996 * 109.47116 * 300.00020 * 23 22 20 25 25 C 1.53003 * 109.47329 * 60.00489 * 24 23 22 26 26 H 1.08993 * 109.47365 * 59.99556 * 25 24 23 27 27 C 1.53003 * 109.47091 * 180.02562 * 25 24 23 28 28 F 1.39899 * 109.46877 * 179.97438 * 27 25 24 29 29 F 1.39900 * 109.46859 * 299.99641 * 27 25 24 30 30 F 1.39897 * 109.47302 * 59.99444 * 27 25 24 31 31 C 1.52996 * 109.47241 * 115.69005 * 20 18 10 32 32 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.47585 * 59.99916 * 9 7 2 34 34 H 1.09003 * 109.46887 * 299.99408 * 9 7 2 35 35 H 1.09001 * 109.47565 * 29.99614 * 11 10 9 36 36 H 1.08996 * 109.46942 * 150.00021 * 11 10 9 37 37 H 1.08002 * 120.42054 * 359.97425 * 13 12 11 38 38 H 1.07997 * 120.78769 * 180.20808 * 14 13 12 39 39 H 1.08005 * 120.41619 * 179.75062 * 15 14 13 40 40 H 1.07999 * 119.61355 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.46877 * 59.99815 * 22 20 18 42 42 H 1.08997 * 109.46861 * 179.97438 * 22 20 18 43 43 H 1.09001 * 109.46739 * 179.97438 * 23 22 20 44 44 H 1.09006 * 109.47236 * 60.00277 * 23 22 20 45 45 H 1.09001 * 109.47466 * 299.99788 * 24 23 22 46 46 H 1.09001 * 109.47134 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47466 * 179.97438 * 31 20 18 48 48 H 1.09001 * 109.47393 * 300.00148 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 4.3729 -3.2216 1.2595 12 6 5.8326 -2.9721 1.5390 13 6 6.2023 -1.9126 2.3460 14 6 7.5475 -1.6949 2.6011 15 6 8.4752 -2.5487 2.0237 16 6 8.0310 -3.5841 1.2237 17 7 6.7426 -3.7641 1.0068 18 6 4.1058 -3.2515 -1.1623 19 8 4.4329 -4.4194 -1.1563 20 6 3.8119 -2.5582 -2.4677 21 1 3.4585 -1.5462 -2.2700 22 6 2.7345 -3.3354 -3.2267 23 6 3.2306 -4.7559 -3.5042 24 6 4.5055 -4.6952 -4.3478 25 6 5.5829 -3.9180 -3.5888 26 1 5.7955 -4.4194 -2.6447 27 6 6.8576 -3.8568 -4.4328 28 9 7.8425 -3.1456 -3.7389 29 9 7.3113 -5.1555 -4.6870 30 9 6.5843 -3.2128 -5.6443 31 6 5.0868 -2.4974 -3.3113 32 1 -0.4850 0.8401 0.0004 33 1 3.8746 -0.6808 0.8905 34 1 3.8751 -0.6797 -0.8895 35 1 3.7722 -2.8099 2.0705 36 1 4.1955 -4.2944 1.1842 37 1 5.4525 -1.2645 2.7752 38 1 7.8655 -0.8770 3.2305 39 1 9.5316 -2.4065 2.1976 40 1 8.7472 -4.2531 0.7700 41 1 1.8262 -3.3787 -2.6256 42 1 2.5216 -2.8337 -4.1706 43 1 2.4629 -5.3097 -4.0445 44 1 3.4432 -5.2575 -2.5600 45 1 4.2929 -4.1937 -5.2920 46 1 4.8587 -5.7072 -4.5459 47 1 4.8741 -1.9963 -4.2557 48 1 5.8543 -1.9437 -2.7706 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -162.946253 kcal Electronic energy + Delta-G solvation = -36237.149039 eV Core-core repulsion = 31262.520175 eV Total energy + Delta-G solvation = -4974.628865 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.97136 -47.44899 -47.43845 -40.42073 -39.77845 -37.13182 -35.16009 -32.92896 -32.31326 -31.94118 -31.42462 -30.64710 -28.29155 -26.41526 -25.52149 -23.45164 -23.33091 -22.47870 -21.95916 -21.54365 -20.37070 -18.47651 -18.10309 -17.82339 -17.43556 -17.18302 -16.69889 -16.24646 -15.99206 -15.48647 -15.29347 -15.11841 -14.68106 -14.40039 -14.24592 -14.16773 -13.88633 -13.74589 -13.62064 -13.58579 -13.47007 -13.28261 -13.13249 -13.00873 -12.63639 -12.58319 -12.28596 -12.10406 -11.94290 -11.65843 -11.65158 -11.53636 -11.45136 -11.09332 -10.95170 -10.82235 -10.61966 -10.35591 -10.06012 -9.84329 -9.77891 -9.69857 -9.25768 -9.02202 -8.81370 -8.58403 -7.84170 -6.28637 -4.30963 1.17564 1.39480 2.92276 3.10799 3.18372 3.21257 3.26698 3.61207 3.97544 4.12015 4.17679 4.19336 4.27412 4.48722 4.82930 4.89543 4.91308 4.94861 5.01866 5.12192 5.14807 5.24168 5.35684 5.40984 5.47875 5.59677 5.65898 5.68306 5.72419 5.76141 5.86606 5.92416 6.08307 6.12809 6.19426 6.22605 6.24831 6.28657 6.32217 6.35608 6.45420 6.61650 6.64956 6.79805 6.83910 7.23955 7.34919 8.06089 8.19669 8.32374 8.76710 8.90223 9.30430 10.83689 Molecular weight = 370.16amu Principal moments of inertia in cm(-1) A = 0.007186 B = 0.004778 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3895.682689 B = 5858.992898 C = 8175.006062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.586 5.586 11 C 0.166 3.834 12 C 0.119 3.881 13 C -0.160 4.160 14 C -0.080 4.080 15 C -0.180 4.180 16 C 0.095 3.905 17 N -0.458 5.458 18 C 0.530 3.470 19 O -0.542 6.542 20 C -0.106 4.106 21 H 0.113 0.887 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.139 4.139 26 H 0.141 0.859 27 C 0.450 3.550 28 F -0.187 7.187 29 F -0.187 7.187 30 F -0.188 7.188 31 C -0.101 4.101 32 H 0.267 0.733 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.318 -4.242 -2.307 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.099 0.901 9 C 0.087 3.913 10 N -0.316 5.316 11 C 0.041 3.959 12 C -0.020 4.020 13 C -0.180 4.180 14 C -0.106 4.106 15 C -0.201 4.201 16 C -0.063 4.063 17 N -0.167 5.167 18 C 0.319 3.681 19 O -0.422 6.422 20 C -0.127 4.127 21 H 0.131 0.869 22 C -0.138 4.138 23 C -0.168 4.168 24 C -0.142 4.142 25 C -0.158 4.158 26 H 0.159 0.841 27 C 0.396 3.604 28 F -0.169 7.169 29 F -0.169 7.169 30 F -0.170 7.170 31 C -0.139 4.139 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.048 -5.398 -2.849 14.405 hybrid contribution 0.995 2.057 0.468 2.332 sum 14.043 -3.341 -2.382 14.630 Atomic orbital electron populations 1.69882 1.06171 1.27231 1.49153 1.24849 0.94677 0.98725 0.94229 0.87009 0.80456 0.84237 0.79050 1.19781 1.20820 1.18935 1.21359 0.88794 0.95076 1.52687 0.90131 1.19862 0.95946 0.78054 0.97442 1.47880 1.63057 1.15739 1.04891 1.20155 0.87434 1.00496 0.87779 1.21915 0.96939 0.90931 0.92234 1.22103 0.96968 0.98814 1.00134 1.21545 0.93076 0.98309 0.97701 1.22101 1.00578 0.97325 1.00054 1.22777 0.92588 0.95857 0.95078 1.67634 1.01564 1.27623 1.19892 1.20342 0.76055 0.86437 0.85270 1.90469 1.48569 1.16268 1.86882 1.21303 0.95830 1.02927 0.92611 0.86924 1.21348 0.97592 0.95091 0.99753 1.21806 0.95146 0.97644 1.02170 1.21443 0.95080 0.99506 0.98146 1.22791 0.90631 1.01044 1.01340 0.84139 1.20936 0.87243 0.73038 0.79174 1.93155 1.65623 1.78958 1.79143 1.93145 1.90724 1.38351 1.94640 1.93135 1.93786 1.82081 1.47960 1.21443 0.97500 0.94056 1.00888 0.92297 0.94851 0.95382 0.88711 0.88613 0.84651 0.85152 0.85284 0.83215 0.90514 0.91493 0.92248 0.87998 0.91707 0.91371 0.90096 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 13.96 55.43 0.77 -23.81 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 18.85 27.47 -169.99 -4.67 14.18 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 7 C -0.54 -13.24 9.63 -34.44 -0.33 -13.57 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.21 4.27 3.86 -5.19 -0.02 4.25 16 10 N -0.59 -11.13 2.46 -176.43 -0.43 -11.56 16 11 C 0.17 2.84 5.72 -5.19 -0.03 2.81 16 12 C 0.12 1.90 6.36 -82.59 -0.53 1.38 16 13 C -0.16 -2.21 9.72 -39.44 -0.38 -2.59 16 14 C -0.08 -0.94 10.18 -39.28 -0.40 -1.34 16 15 C -0.18 -2.04 10.11 -39.44 -0.40 -2.44 16 16 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 17 N -0.46 -7.51 10.27 -9.48 -0.10 -7.61 16 18 C 0.53 9.89 6.28 -10.99 -0.07 9.82 16 19 O -0.54 -10.53 10.93 5.56 0.06 -10.47 16 20 C -0.11 -1.78 2.68 -91.77 -0.25 -2.03 16 21 H 0.11 2.05 5.32 -51.93 -0.28 1.78 16 22 C -0.10 -1.57 5.44 -26.73 -0.15 -1.72 16 23 C -0.13 -1.90 5.63 -26.74 -0.15 -2.05 16 24 C -0.10 -1.39 4.96 -26.73 -0.13 -1.53 16 25 C -0.14 -2.03 1.87 -90.61 -0.17 -2.20 16 26 H 0.14 2.36 5.68 -51.93 -0.30 2.06 16 27 C 0.45 6.40 2.69 37.16 0.10 6.50 16 28 F -0.19 -2.81 16.80 2.25 0.04 -2.77 16 29 F -0.19 -2.68 16.80 2.25 0.04 -2.64 16 30 F -0.19 -2.61 16.27 2.25 0.04 -2.58 16 31 C -0.10 -1.50 4.48 -26.73 -0.12 -1.62 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.03 0.67 7.09 -51.93 -0.37 0.31 16 34 H 0.03 0.57 5.62 -51.93 -0.29 0.28 16 35 H 0.09 1.52 7.97 -51.93 -0.41 1.11 16 36 H 0.10 1.71 7.37 -51.93 -0.38 1.33 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.72 5.35 -51.93 -0.28 1.44 16 45 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 46 H 0.07 0.86 7.80 -51.93 -0.41 0.46 16 47 H 0.08 1.08 7.80 -51.93 -0.41 0.68 16 48 H 0.07 1.07 7.80 -51.93 -0.41 0.66 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -28.27 390.59 -8.16 -36.43 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.47 Total: 8.27 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.32 Total: -3.33 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.24 Total: -42.98 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.47 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.67 Total: 14.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.27 -8.16 -36.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.520 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds