Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00515 * 2 1 4 4 H 1.48502 * 109.46885 * 269.99758 * 3 2 1 5 5 H 1.48499 * 109.47325 * 29.99651 * 3 2 1 6 6 H 1.48501 * 109.47382 * 149.99806 * 3 2 1 7 7 C 1.37888 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99569 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00283 * 95.13078 * 10 9 7 12 12 C 1.50700 * 109.46880 * 270.00162 * 11 10 9 13 13 C 1.38230 * 119.61993 * 94.99921 * 12 11 10 14 14 C 1.38629 * 119.16389 * 179.97438 * 13 12 11 15 15 C 1.38667 * 118.41980 * 0.02562 * 14 13 12 16 16 C 1.38186 * 119.16231 * 359.97438 * 15 14 13 17 17 N 1.31853 * 119.61954 * 275.24626 * 12 11 10 18 18 C 1.34783 * 119.99950 * 275.13459 * 10 9 7 19 19 O 1.21279 * 120.00013 * 174.76197 * 18 10 9 20 20 C 1.50700 * 119.99786 * 354.74911 * 18 10 9 21 21 H 1.08999 * 109.47185 * 34.66566 * 20 18 10 22 22 C 1.52999 * 109.46849 * 154.65869 * 20 18 10 23 23 C 1.53007 * 109.47234 * 180.02562 * 22 20 18 24 24 C 1.52995 * 109.46711 * 300.00200 * 23 22 20 25 25 C 1.52999 * 109.47435 * 59.99923 * 24 23 22 26 26 H 1.08999 * 109.46658 * 59.99726 * 25 24 23 27 27 C 1.53002 * 109.47098 * 179.97438 * 25 24 23 28 28 F 1.39897 * 109.47106 * 60.00007 * 27 25 24 29 29 F 1.39895 * 109.46882 * 180.02562 * 27 25 24 30 30 F 1.39905 * 109.47207 * 300.00018 * 27 25 24 31 31 C 1.52994 * 109.47556 * 274.66159 * 20 18 10 32 32 H 0.97005 * 119.99417 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.47501 * 60.00120 * 9 7 2 34 34 H 1.08995 * 109.47535 * 299.99658 * 9 7 2 35 35 H 1.08998 * 109.47416 * 149.99835 * 11 10 9 36 36 H 1.09000 * 109.47233 * 30.00024 * 11 10 9 37 37 H 1.08002 * 120.41496 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.79265 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.42186 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.61784 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47484 * 300.00009 * 22 20 18 42 42 H 1.08999 * 109.47398 * 60.00443 * 22 20 18 43 43 H 1.08993 * 109.46872 * 60.00235 * 23 22 20 44 44 H 1.09002 * 109.46669 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.46787 * 180.02562 * 24 23 22 46 46 H 1.08999 * 109.47106 * 299.99402 * 24 23 22 47 47 H 1.08999 * 109.46891 * 299.99680 * 31 20 18 48 48 H 1.08993 * 109.47551 * 60.00207 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0014 9 6 3.5114 -1.1942 0.0011 10 7 3.9997 -2.5755 0.0022 11 6 4.3513 -3.2291 -1.2608 12 6 3.1377 -3.9250 -1.8211 13 6 2.3492 -3.2780 -2.7541 14 6 1.2353 -3.9272 -3.2636 15 6 0.9545 -5.2083 -2.8134 16 6 1.7887 -5.7914 -1.8787 17 7 2.8374 -5.1420 -1.4121 18 6 4.1254 -3.2449 1.1653 19 8 4.4381 -4.4166 1.1598 20 6 3.8776 -2.5372 2.4725 21 1 3.0823 -1.8031 2.3432 22 6 3.4618 -3.5576 3.5340 23 6 3.2096 -2.8391 4.8611 24 6 4.4895 -2.1304 5.3085 25 6 4.9053 -1.1100 4.2471 26 1 4.1098 -0.3761 4.1175 27 6 6.1849 -0.4008 4.6949 28 9 7.2060 -1.3425 4.8617 29 9 6.5647 0.5326 3.7246 30 9 5.9538 0.2563 5.9082 31 6 5.1578 -1.8288 2.9198 32 1 -0.4849 0.8401 -0.0004 33 1 3.8745 -0.6802 0.8911 34 1 3.8752 -0.6807 -0.8888 35 1 5.1402 -3.9603 -1.0842 36 1 4.7018 -2.4811 -1.9718 37 1 2.5978 -2.2795 -3.0819 38 1 0.6012 -3.4466 -3.9940 39 1 0.0952 -5.7439 -3.1890 40 1 1.5772 -6.7891 -1.5232 41 1 2.5497 -4.0622 3.2154 42 1 4.2570 -4.2918 3.6634 43 1 2.4142 -2.1053 4.7314 44 1 2.9129 -3.5661 5.6171 45 1 4.3100 -1.6189 6.2542 46 1 5.2848 -2.8644 5.4382 47 1 5.9529 -2.5630 3.0492 48 1 5.4540 -1.1018 2.1637 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = -171.816026 kcal Electronic energy + Delta-G solvation = -35743.368466 eV Core-core repulsion = 30768.354979 eV Total energy + Delta-G solvation = -4975.013487 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.08910 -47.57260 -47.54332 -40.08765 -39.38722 -37.52897 -35.21991 -32.81670 -32.02104 -31.78900 -31.53745 -30.60150 -28.22289 -26.27453 -25.63662 -23.50371 -23.04489 -22.35695 -22.06830 -21.47107 -20.04283 -18.66490 -18.22375 -18.15651 -17.28728 -17.12764 -16.48189 -16.15674 -15.75670 -15.37445 -15.17324 -15.08290 -14.60745 -14.48827 -14.25630 -14.06416 -14.04896 -13.90481 -13.72465 -13.69641 -13.38911 -13.33668 -13.05315 -12.87842 -12.65434 -12.49867 -12.33594 -12.10807 -12.01823 -11.85256 -11.62577 -11.31405 -11.26781 -11.16134 -10.97322 -10.69948 -10.59186 -10.34389 -10.23128 -10.16109 -9.68264 -9.37204 -9.02375 -8.92907 -8.78812 -8.48060 -7.79692 -6.26254 -4.27712 1.55700 1.80848 2.76317 3.11361 3.19715 3.22745 3.31977 3.70093 3.82463 4.03895 4.08467 4.20588 4.42497 4.71831 4.73280 4.77277 5.00588 5.02926 5.17251 5.23694 5.24977 5.27854 5.35336 5.39164 5.46081 5.50548 5.53949 5.60989 5.78253 5.86776 5.91560 5.96512 6.03308 6.06645 6.14594 6.19711 6.23413 6.25574 6.36161 6.48261 6.58070 6.61018 6.65443 6.67208 7.16540 7.28444 7.37604 8.09724 8.35156 8.54804 8.80917 8.95348 9.32922 10.86025 Molecular weight = 370.16amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.003764 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.872371 B = 7436.881379 C = 8896.210400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.863 3.137 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.206 3.794 10 N -0.590 5.590 11 C 0.171 3.829 12 C 0.121 3.879 13 C -0.132 4.132 14 C -0.079 4.079 15 C -0.179 4.179 16 C 0.087 3.913 17 N -0.459 5.459 18 C 0.528 3.472 19 O -0.542 6.542 20 C -0.104 4.104 21 H 0.116 0.884 22 C -0.100 4.100 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.131 4.131 26 H 0.119 0.881 27 C 0.453 3.547 28 F -0.183 7.183 29 F -0.183 7.183 30 F -0.186 7.186 31 C -0.104 4.104 32 H 0.266 0.734 33 H 0.036 0.964 34 H 0.029 0.971 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -2.908 3.506 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.690 3.310 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.095 0.905 9 C 0.085 3.915 10 N -0.321 5.321 11 C 0.047 3.953 12 C -0.018 4.018 13 C -0.153 4.153 14 C -0.105 4.105 15 C -0.199 4.199 16 C -0.070 4.070 17 N -0.168 5.168 18 C 0.316 3.684 19 O -0.420 6.420 20 C -0.125 4.125 21 H 0.134 0.866 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.150 4.150 26 H 0.137 0.863 27 C 0.399 3.601 28 F -0.165 7.165 29 F -0.164 7.164 30 F -0.168 7.168 31 C -0.142 4.142 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.059 -3.765 4.140 9.811 hybrid contribution -0.445 1.815 -0.716 2.001 sum 7.614 -1.950 3.424 8.573 Atomic orbital electron populations 1.69893 1.06185 1.27059 1.49402 1.24853 0.94644 0.98617 0.94391 0.87052 0.80643 0.84322 0.79016 1.19958 1.20908 1.18622 1.21333 0.88866 0.94834 1.52211 0.90479 1.19901 0.96088 0.77956 0.97601 1.47896 1.64467 1.15310 1.04408 1.20125 0.93090 0.96039 0.86057 1.21560 0.97172 0.90508 0.92545 1.21915 0.95444 1.00280 0.97636 1.21469 0.96132 0.94311 0.98572 1.22029 1.01048 0.96693 1.00140 1.22627 0.91015 0.99486 0.93894 1.67546 1.17392 1.08771 1.23079 1.20256 0.76454 0.86523 0.85205 1.90652 1.48116 1.15704 1.87497 1.21276 0.98957 0.99387 0.92909 0.86615 1.21364 1.02380 0.97102 0.92909 1.21501 0.96521 0.99758 0.97398 1.21611 0.99633 0.97417 0.96681 1.22537 0.93543 1.00096 0.98860 0.86289 1.20697 0.87095 0.77451 0.74841 1.93157 1.63039 1.64892 1.95411 1.93186 1.92658 1.67385 1.63213 1.93160 1.94616 1.82321 1.46676 1.21499 0.98445 0.99877 0.94403 0.92433 0.94662 0.95292 0.89278 0.89624 0.84982 0.85431 0.85643 0.83641 0.91240 0.91027 0.91109 0.91093 0.90800 0.90619 0.90302 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 13.96 55.43 0.77 -23.90 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.86 18.81 27.47 -169.99 -4.67 14.14 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 7 C -0.53 -13.12 9.26 -34.44 -0.32 -13.44 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.21 4.21 3.91 -5.19 -0.02 4.19 16 10 N -0.59 -11.47 2.45 -176.44 -0.43 -11.91 16 11 C 0.17 3.03 5.72 -5.20 -0.03 3.00 16 12 C 0.12 2.28 6.36 -82.59 -0.53 1.76 16 13 C -0.13 -2.32 9.72 -39.44 -0.38 -2.71 16 14 C -0.08 -1.26 10.18 -39.28 -0.40 -1.66 16 15 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 16 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 17 N -0.46 -8.99 10.27 -9.47 -0.10 -9.08 16 18 C 0.53 10.38 6.72 -10.98 -0.07 10.30 16 19 O -0.54 -11.81 15.73 5.56 0.09 -11.73 16 20 C -0.10 -1.75 1.68 -91.78 -0.15 -1.90 16 21 H 0.12 2.15 6.24 -51.93 -0.32 1.83 16 22 C -0.10 -1.51 4.74 -26.73 -0.13 -1.63 16 23 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 24 C -0.12 -1.29 4.96 -26.73 -0.13 -1.42 16 25 C -0.13 -1.63 2.16 -90.60 -0.20 -1.83 16 26 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 27 C 0.45 5.78 2.69 37.16 0.10 5.88 16 28 F -0.18 -2.38 16.28 2.25 0.04 -2.34 16 29 F -0.18 -2.56 16.80 2.25 0.04 -2.52 16 30 F -0.19 -2.35 16.80 2.25 0.04 -2.31 16 31 C -0.10 -1.50 4.05 -26.71 -0.11 -1.60 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 0.70 4.63 -51.93 -0.24 0.46 16 34 H 0.03 0.57 7.26 -51.93 -0.38 0.19 16 35 H 0.09 1.58 7.50 -51.93 -0.39 1.19 16 36 H 0.09 1.27 7.76 -51.93 -0.40 0.87 16 37 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 38 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.09 7.87 -51.93 -0.41 0.69 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.73 7.80 -51.93 -0.41 0.32 16 46 H 0.08 0.82 7.80 -51.93 -0.41 0.42 16 47 H 0.08 1.11 7.81 -51.93 -0.41 0.71 16 48 H 0.08 1.18 6.82 -51.93 -0.35 0.83 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -30.22 398.02 -8.13 -38.35 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.68 Total: 7.83 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.22 Total: -2.53 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.24 Total: -44.89 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.67 Total: 14.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.22 -8.13 -38.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.464 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds