Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00270 * 2 1 4 4 C 1.38521 * 119.95252 * 359.97438 * 3 2 1 5 5 C 1.39513 * 119.90870 * 180.02562 * 4 3 2 6 6 C 1.47861 * 120.09388 * 179.97438 * 5 4 3 7 7 O 1.21554 * 120.00461 * 325.39478 * 6 5 4 8 8 N 1.34777 * 119.99994 * 145.39167 * 6 5 4 9 9 C 1.46502 * 120.00393 * 175.29056 * 8 6 5 10 10 C 1.50700 * 109.46948 * 95.29813 * 9 8 6 11 11 H 1.07995 * 120.00389 * 4.92387 * 10 9 8 12 12 C 1.37881 * 119.99346 * 184.92486 * 10 9 8 13 13 N 1.31519 * 119.99488 * 184.83669 * 12 10 9 14 14 Si 1.86798 * 120.00450 * 4.83918 * 12 10 9 15 15 H 1.48492 * 109.47050 * 93.50060 * 14 12 10 16 16 H 1.48496 * 109.47202 * 213.50571 * 14 12 10 17 17 H 1.48504 * 109.46918 * 333.50113 * 14 12 10 18 18 C 1.46502 * 119.99837 * 355.01346 * 8 6 5 19 19 C 1.50703 * 109.46992 * 132.17612 * 18 8 6 20 20 C 1.38220 * 119.61993 * 95.00109 * 19 18 8 21 21 C 1.38634 * 119.16239 * 179.97438 * 20 19 18 22 22 C 1.38669 * 118.41652 * 0.02562 * 21 20 19 23 23 C 1.38183 * 119.16466 * 359.97438 * 22 21 20 24 24 N 1.31855 * 119.61420 * 274.72184 * 19 18 8 25 25 C 1.39515 * 119.80930 * 0.25644 * 5 4 3 26 26 C 1.38509 * 119.91147 * 359.51447 * 25 5 4 27 27 O 1.35904 * 119.95658 * 180.23125 * 26 25 5 28 28 C 1.42898 * 117.00069 * 353.73369 * 27 26 25 29 29 C 1.38728 * 119.95655 * 180.02562 * 3 2 1 30 30 C 1.50696 * 119.90758 * 359.97438 * 29 3 2 31 31 H 1.09002 * 109.47021 * 59.99778 * 1 2 3 32 32 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47400 * 299.99990 * 1 2 3 34 34 H 1.08000 * 120.04125 * 0.04650 * 4 3 2 35 35 H 1.08991 * 109.47165 * 215.29964 * 9 8 6 36 36 H 1.09001 * 109.46970 * 335.30066 * 9 8 6 37 37 H 0.96998 * 119.99853 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.47345 * 252.17307 * 18 8 6 39 39 H 1.09000 * 109.47618 * 12.17338 * 18 8 6 40 40 H 1.08005 * 120.41839 * 359.95567 * 20 19 18 41 41 H 1.07994 * 120.78793 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.41667 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.61439 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.04441 * 179.74525 * 25 5 4 45 45 H 1.09003 * 109.47075 * 66.55985 * 28 27 26 46 46 H 1.08998 * 109.47047 * 186.55978 * 28 27 26 47 47 H 1.08996 * 109.46977 * 306.55726 * 28 27 26 48 48 H 1.09000 * 109.47182 * 89.99414 * 30 29 3 49 49 H 1.09000 * 109.47206 * 210.00369 * 30 29 3 50 50 H 1.09009 * 109.46855 * 329.99873 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3720 -0.0005 5 6 1.9251 3.6146 -0.0011 6 6 1.1228 4.8566 -0.0022 7 8 0.0655 4.8967 -0.6005 8 7 1.5638 5.9443 0.6602 9 6 0.8222 7.2049 0.5746 10 6 -0.1120 7.3190 1.7516 11 1 -0.0931 6.5711 2.5305 12 6 -0.9909 8.3782 1.8338 13 7 -1.7388 8.5303 2.9049 14 14 -1.1194 9.5970 0.4241 15 1 -2.2113 9.1807 -0.4921 16 1 -1.4142 10.9486 0.9637 17 1 0.1654 9.6305 -0.3199 18 6 2.7816 5.8645 1.4707 19 6 3.6773 7.0328 1.1480 20 6 3.6239 8.1711 1.9303 21 6 4.4524 9.2399 1.6252 22 6 5.3071 9.1234 0.5394 23 6 5.3049 7.9540 -0.1968 24 7 4.5067 6.9550 0.1260 25 6 3.3186 3.6818 -0.0065 26 6 4.0664 2.5159 -0.0011 27 8 5.4239 2.5804 -0.0016 28 6 6.0119 3.8747 -0.1468 29 6 3.4315 1.2824 -0.0005 30 6 4.2492 0.0165 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2122 2.3154 -0.0002 35 1 1.5227 8.0399 0.5844 36 1 0.2457 7.2251 -0.3502 37 1 -2.3568 9.2756 2.9630 38 1 2.5169 5.8909 2.5278 39 1 3.3046 4.9340 1.2503 40 1 2.9451 8.2272 2.7685 41 1 4.4327 10.1417 2.2190 42 1 5.9667 9.9360 0.2730 43 1 5.9673 7.8556 -1.0442 44 1 3.8136 4.6417 -0.0111 45 1 5.7840 4.4779 0.7321 46 1 7.0924 3.7736 -0.2479 47 1 5.6076 4.3598 -1.0352 48 1 4.4458 -0.2890 -1.0282 49 1 5.1940 0.1944 0.5129 50 1 3.6988 -0.7715 0.5138 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069776893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = -15.565782 kcal Electronic energy + Delta-G solvation = -34809.554230 eV Core-core repulsion = 30383.173003 eV Total energy + Delta-G solvation = -4426.381227 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.95691 -40.12166 -39.01904 -38.91254 -36.15060 -35.44610 -33.18889 -32.52443 -32.30310 -31.33420 -29.74150 -28.70430 -27.82381 -27.39866 -26.77094 -25.98611 -23.43929 -22.97771 -22.33714 -21.73750 -21.33503 -19.61348 -17.92054 -17.22061 -17.01131 -16.63948 -16.55193 -16.20678 -16.10213 -15.88039 -15.61204 -15.49898 -15.37291 -14.97968 -14.53602 -14.33765 -13.87057 -13.76053 -13.36501 -13.35768 -13.20539 -12.99766 -12.91544 -12.52513 -12.46350 -12.38701 -12.13888 -11.86737 -11.73125 -11.67935 -11.53340 -11.51727 -11.16466 -11.02358 -10.87306 -10.65655 -10.45027 -10.22036 -9.78054 -9.66221 -9.42791 -9.15485 -8.89761 -8.61720 -8.25413 -8.06555 -7.80858 -6.15342 -4.13597 1.02317 1.15741 1.37759 1.42968 2.86230 3.19048 3.23962 3.31100 3.34964 3.52755 3.63606 3.87144 4.06899 4.32978 4.35119 4.69972 4.86835 4.91393 4.93805 4.98668 5.00198 5.11867 5.15063 5.17775 5.19978 5.22810 5.25030 5.28715 5.32045 5.48779 5.50588 5.57133 5.64776 5.67406 5.73772 5.74208 5.89315 5.96127 5.98456 6.20537 6.23874 6.31584 6.36043 6.39832 6.46614 6.68143 6.78502 6.85905 7.20887 7.25381 7.36657 7.54610 8.03066 8.07850 8.39516 8.79362 8.89305 9.45865 10.97530 Molecular weight = 370.17amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.004006 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.640563 B = 6987.659076 C = 9729.409274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.153 3.847 4 C -0.185 4.185 5 C -0.047 4.047 6 C 0.553 3.447 7 O -0.528 6.528 8 N -0.574 5.574 9 C 0.217 3.783 10 C -0.528 4.528 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.871 3.129 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.122 3.878 19 C 0.121 3.879 20 C -0.138 4.138 21 C -0.078 4.078 22 C -0.175 4.175 23 C 0.091 3.909 24 N -0.481 5.481 25 C -0.226 4.226 26 C 0.155 3.845 27 O -0.312 6.312 28 C 0.028 3.972 29 C -0.138 4.138 30 C -0.093 4.093 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.152 0.848 44 H 0.169 0.831 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.091 -9.181 -4.076 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.108 3.892 4 C -0.205 4.205 5 C -0.050 4.050 6 C 0.340 3.660 7 O -0.406 6.406 8 N -0.305 5.305 9 C 0.097 3.903 10 C -0.567 4.567 11 H 0.095 0.905 12 C -0.126 4.126 13 N -0.532 5.532 14 Si 0.698 3.302 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.002 4.002 19 C -0.018 4.018 20 C -0.158 4.158 21 C -0.104 4.104 22 C -0.195 4.195 23 C -0.066 4.066 24 N -0.191 5.191 25 C -0.245 4.245 26 C 0.109 3.891 27 O -0.225 6.225 28 C -0.067 4.067 29 C -0.140 4.140 30 C -0.149 4.149 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.169 0.831 44 H 0.186 0.814 45 H 0.076 0.924 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.605 -10.120 -4.780 20.025 hybrid contribution -0.625 2.318 -0.110 2.403 sum 15.980 -7.803 -4.890 18.444 Atomic orbital electron populations 1.23128 0.77901 1.03866 1.02181 1.86012 1.21625 1.26189 1.88582 1.18221 0.90764 0.84174 0.96055 1.21186 1.00825 0.90525 1.07978 1.19663 0.92884 0.93774 0.98720 1.18104 0.85139 0.82891 0.79837 1.90760 1.22146 1.83226 1.44427 1.47677 1.24353 1.12073 1.46360 1.19715 0.91849 0.79965 0.98747 1.21255 1.18932 1.10345 1.06145 0.90479 1.24801 0.95021 0.97294 0.95440 1.69895 1.24917 1.31003 1.27372 0.86933 0.79331 0.80777 0.83195 1.19826 1.21013 1.19220 1.21248 0.84853 0.97209 0.96869 1.21404 0.93724 0.95664 0.90979 1.22215 0.98693 0.93363 1.01558 1.21621 0.93952 0.98547 0.96261 1.22087 1.00835 0.99494 0.97120 1.22620 0.96254 0.89250 0.98443 1.67347 1.05261 1.31163 1.15341 1.21929 0.93899 0.99180 1.09510 1.18232 0.82602 0.92362 0.95912 1.86005 1.16628 1.32051 1.87810 1.23116 0.98405 0.82957 1.02233 1.18397 0.90508 0.94240 1.10812 1.20406 0.98859 0.93583 1.02092 0.92211 0.88160 0.92196 0.84221 0.95362 0.94377 0.92527 0.89654 0.86173 0.83627 0.84849 0.85166 0.83067 0.81442 0.92400 0.88526 0.91829 0.91711 0.91317 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.01 9.52 -19.44 -0.19 -4.19 16 3 C 0.15 2.25 6.65 -39.30 -0.26 1.98 16 4 C -0.19 -3.05 8.59 -39.00 -0.34 -3.39 16 5 C -0.05 -0.84 5.44 -105.01 -0.57 -1.41 16 6 C 0.55 12.09 7.37 -12.32 -0.09 12.00 16 7 O -0.53 -13.44 16.36 5.32 0.09 -13.35 16 8 N -0.57 -12.26 2.69 -177.54 -0.48 -12.73 16 9 C 0.22 5.34 4.01 -5.19 -0.02 5.32 16 10 C -0.53 -14.76 9.93 -34.44 -0.34 -15.10 16 11 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 12 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 13 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 14 Si 0.87 21.59 27.41 -169.99 -4.66 16.93 16 15 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.39 6.67 56.52 0.38 -6.01 16 18 C 0.12 2.09 5.50 -5.19 -0.03 2.06 16 19 C 0.12 1.90 5.26 -82.59 -0.43 1.47 16 20 C -0.14 -2.08 8.56 -39.44 -0.34 -2.42 16 21 C -0.08 -0.97 10.18 -39.28 -0.40 -1.37 16 22 C -0.18 -1.92 10.11 -39.44 -0.40 -2.31 16 23 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 24 N -0.48 -6.88 9.21 -9.47 -0.09 -6.97 16 25 C -0.23 -3.52 6.42 -39.01 -0.25 -3.77 16 26 C 0.15 2.20 6.64 -39.30 -0.26 1.94 16 27 O -0.31 -3.91 9.52 -19.44 -0.19 -4.10 16 28 C 0.03 0.28 9.82 101.05 0.99 1.27 16 29 C -0.14 -1.94 5.91 -104.26 -0.62 -2.55 16 30 C -0.09 -1.06 9.56 36.00 0.34 -0.71 16 31 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.14 2.28 6.22 -52.49 -0.33 1.95 16 35 H 0.03 0.68 5.60 -51.93 -0.29 0.38 16 36 H 0.04 1.02 6.34 -51.93 -0.33 0.69 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 39 H 0.12 1.88 3.10 -55.02 -0.17 1.71 16 40 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.17 2.52 2.94 -52.49 -0.15 2.37 16 45 H 0.06 0.59 7.77 -51.93 -0.40 0.19 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 50 H 0.07 0.74 7.52 -51.92 -0.39 0.35 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -34.67 406.89 -7.52 -42.19 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.60 Total: 4.91 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.31 Total: -2.77 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.21 Total: -45.75 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.28 Total: -21.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.66 Total: 16.93 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.67 -7.52 -42.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069776893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.626 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds