Wall clock time and date at job start Tue Mar 31 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00561 * 2 1 4 4 H 1.48495 * 109.47108 * 270.00020 * 3 2 1 5 5 H 1.48511 * 109.46660 * 29.99792 * 3 2 1 6 6 H 1.48493 * 109.47186 * 149.99585 * 3 2 1 7 7 C 1.37881 * 119.99351 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00067 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99469 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46772 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00157 * 78.15644 * 10 9 7 12 12 C 1.50698 * 109.47553 * 89.99507 * 11 10 9 13 13 C 1.38227 * 119.61575 * 94.98026 * 12 11 10 14 14 C 1.38628 * 119.15692 * 179.79580 * 13 12 11 15 15 C 1.38674 * 118.42141 * 0.46984 * 14 13 12 16 16 C 1.38179 * 119.16171 * 359.50947 * 15 14 13 17 17 N 1.31856 * 119.61995 * 275.00626 * 12 11 10 18 18 C 1.34777 * 120.00292 * 258.15234 * 10 9 7 19 19 O 1.21656 * 120.00222 * 181.13440 * 18 10 9 20 20 C 1.47038 * 119.99881 * 1.13283 * 18 10 9 21 21 C 1.44557 * 123.48709 * 30.61199 * 20 18 10 22 22 C 1.32812 * 113.06117 * 179.97438 * 21 20 18 23 23 Cl 1.73599 * 124.68655 * 180.02562 * 22 21 20 24 24 S 1.75492 * 110.61641 * 359.97438 * 22 21 20 25 25 C 1.36179 * 123.48749 * 210.31484 * 20 18 10 26 26 Cl 1.73601 * 124.59106 * 359.97438 * 25 20 18 27 27 H 0.97000 * 119.99513 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47336 * 60.00354 * 9 7 2 29 29 H 1.08996 * 109.47363 * 299.99261 * 9 7 2 30 30 H 1.09006 * 109.46641 * 329.99457 * 11 10 9 31 31 H 1.09001 * 109.47611 * 210.00379 * 11 10 9 32 32 H 1.07997 * 120.42395 * 0.02562 * 13 12 11 33 33 H 1.08003 * 120.79046 * 180.23503 * 14 13 12 34 34 H 1.08000 * 120.41893 * 179.78302 * 15 14 13 35 35 H 1.08005 * 119.61351 * 180.25470 * 16 15 14 36 36 H 1.07998 * 123.46887 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5755 -0.0001 11 6 3.9988 -3.3526 -1.2419 12 6 5.3095 -3.1556 -1.9589 13 6 6.3327 -4.0664 -1.7743 14 6 7.5331 -3.8783 -2.4419 15 6 7.6633 -2.7707 -3.2661 16 6 6.5965 -1.9031 -3.4018 17 7 5.4673 -2.1161 -2.7546 18 6 4.4497 -3.1313 1.1423 19 8 4.8744 -4.2713 1.1380 20 6 4.4276 -2.3597 2.3938 21 6 3.4423 -1.3433 2.6868 22 6 3.6163 -0.7775 3.8757 23 17 2.6083 0.4749 4.5308 24 16 5.0052 -1.4720 4.6932 25 6 5.3296 -2.5327 3.3992 26 17 6.6341 -3.6777 3.3667 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6810 0.8906 29 1 3.8752 -0.6799 -0.8895 30 1 3.1814 -3.0166 -1.8801 31 1 3.8671 -4.4093 -1.0093 32 1 6.1975 -4.9159 -1.1213 33 1 8.3487 -4.5756 -2.3199 34 1 8.5855 -2.5909 -3.7988 35 1 6.6885 -1.0405 -4.0450 36 1 2.6467 -1.0720 2.0088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069780160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:47 Heat of formation + Delta-G solvation = 27.927058 kcal Electronic energy + Delta-G solvation = -26398.120705 eV Core-core repulsion = 22447.155371 eV Total energy + Delta-G solvation = -3950.965334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 370.005 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57701 -40.71960 -38.53649 -38.03956 -37.31618 -36.90042 -34.72690 -33.38987 -32.88017 -30.66382 -29.98619 -28.25219 -25.68267 -24.57531 -24.24342 -23.12733 -22.02752 -20.26161 -19.38895 -19.15022 -17.85448 -17.62577 -17.51766 -16.87253 -16.59752 -16.28156 -16.08707 -15.79393 -15.54287 -15.10885 -14.87024 -14.67782 -14.55977 -14.21662 -14.12986 -13.90618 -13.62348 -13.36604 -13.15290 -12.81009 -12.77033 -12.62909 -12.46757 -12.16988 -12.11342 -11.96410 -11.78456 -11.69027 -11.00928 -10.82056 -10.79309 -10.40761 -9.96802 -9.84098 -9.65511 -9.46489 -8.34071 -6.39456 -0.70203 -0.46045 0.12436 0.34197 0.40403 0.70191 0.76205 1.16607 1.33730 1.36934 1.43507 2.01267 2.20000 2.28971 2.97942 2.99424 3.36299 3.60559 3.84094 3.89586 4.03381 4.15578 4.25409 4.27544 4.48108 4.59227 4.62579 4.66594 4.78854 4.88584 4.89987 5.09635 5.24729 5.28336 5.35969 5.55292 5.82065 6.10573 6.50180 6.66212 7.08529 7.11781 7.25278 8.80679 Molecular weight = 370.01amu Principal moments of inertia in cm(-1) A = 0.007851 B = 0.005264 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3565.547357 B = 5317.755377 C = 7907.057338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.044 3.956 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.209 3.791 10 N -0.575 5.575 11 C 0.170 3.830 12 C 0.095 3.905 13 C -0.158 4.158 14 C -0.079 4.079 15 C -0.163 4.163 16 C 0.080 3.920 17 N -0.505 5.505 18 C 0.573 3.427 19 O -0.553 6.553 20 C -0.153 4.153 21 C -0.103 4.103 22 C -0.183 4.183 23 Cl -0.001 7.001 24 S 0.338 5.662 25 C -0.136 4.136 26 Cl 0.023 6.977 27 H 0.271 0.729 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.176 0.824 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.794 -2.242 4.274 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.158 4.158 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.063 0.937 9 C 0.087 3.913 10 N -0.304 5.304 11 C 0.047 3.953 12 C -0.042 4.042 13 C -0.178 4.178 14 C -0.104 4.104 15 C -0.182 4.182 16 C -0.077 4.077 17 N -0.215 5.215 18 C 0.361 3.639 19 O -0.434 6.434 20 C -0.173 4.173 21 C -0.132 4.132 22 C -0.326 4.326 23 Cl 0.027 6.973 24 S 0.601 5.399 25 C -0.284 4.284 26 Cl 0.052 6.948 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.193 0.807 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 16.832 -1.852 5.617 17.841 hybrid contribution -0.568 -0.009 -1.565 1.665 sum 16.264 -1.861 4.052 16.864 Atomic orbital electron populations 1.69991 1.07769 1.28361 1.50009 1.25445 0.95165 1.01710 0.93482 0.86313 0.80546 0.80548 0.79696 1.19253 1.19971 1.16547 1.21305 0.90373 0.93690 1.51833 0.93713 1.20040 0.93627 0.79185 0.98407 1.47673 1.60382 1.15223 1.07143 1.20161 0.93826 0.96918 0.84386 1.21516 0.96674 0.91423 0.94631 1.22154 0.94379 1.00776 1.00494 1.21973 0.97037 0.97630 0.93810 1.22521 1.01096 0.94957 0.99655 1.23278 0.88235 0.99666 0.96550 1.67477 1.26725 1.19876 1.07415 1.17566 0.77622 0.85777 0.82979 1.90707 1.48607 1.17829 1.86278 1.20038 0.98599 1.01730 0.96920 1.22417 1.00479 0.93670 0.96621 1.25219 1.03557 1.03667 1.00149 1.98371 1.66047 1.48405 1.84464 1.82567 1.19444 1.25775 1.12096 1.25459 0.98486 1.02577 1.01841 1.98382 1.42566 1.55926 1.97925 0.91983 0.92944 0.95029 0.89723 0.88584 0.84703 0.81816 0.81121 0.80734 0.79967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.24 13.96 21.45 0.30 -52.94 16 2 C 0.04 2.33 5.32 84.66 0.45 2.78 16 3 Si 0.91 40.58 27.47 68.60 1.88 42.46 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 7 C -0.53 -28.06 7.70 25.60 0.20 -27.87 16 8 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 9 C 0.21 9.53 3.74 85.63 0.32 9.85 16 10 N -0.58 -24.34 2.46 -834.81 -2.06 -26.40 16 11 C 0.17 6.61 5.67 85.63 0.49 7.09 16 12 C 0.10 3.31 6.36 42.55 0.27 3.58 16 13 C -0.16 -4.58 9.72 22.36 0.22 -4.37 16 14 C -0.08 -1.72 10.18 22.47 0.23 -1.49 16 15 C -0.16 -3.24 10.11 22.36 0.23 -3.02 16 16 C 0.08 2.06 11.18 84.67 0.95 3.01 16 17 N -0.50 -17.49 10.27 -183.89 -1.89 -19.38 16 18 C 0.57 23.63 7.42 86.55 0.64 24.28 16 19 O -0.55 -22.98 15.08 -4.21 -0.06 -23.05 16 20 C -0.15 -5.79 5.43 -19.84 -0.11 -5.90 16 21 C -0.10 -3.97 7.81 22.70 0.18 -3.79 16 22 C -0.18 -5.89 7.00 66.64 0.47 -5.42 16 23 Cl 0.00 -0.04 29.27 -2.72 -0.08 -0.12 16 24 S 0.34 8.42 23.02 -56.49 -1.30 7.12 16 25 C -0.14 -4.27 6.85 67.34 0.46 -3.81 16 26 Cl 0.02 0.66 27.68 -2.72 -0.08 0.58 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.05 2.36 3.59 -2.38 -0.01 2.35 16 29 H 0.03 1.48 7.57 -2.39 -0.02 1.47 16 30 H 0.08 3.51 8.01 -2.38 -0.02 3.49 16 31 H 0.10 3.54 7.34 -2.39 -0.02 3.52 16 32 H 0.14 3.95 7.96 -2.91 -0.02 3.92 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.18 8.30 4.09 -2.91 -0.01 8.29 16 Total: -1.00 -64.16 353.57 2.80 -61.36 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.10 Total: 15.44 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.98 Total: -5.07 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.65 Total: -98.73 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.88 Total: 42.46 kcal Atomic # 16 Polarization: 8.42 SS G_CDS: -1.30 Total: 7.12 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.15 Total: 0.46 kcal Total: -64.16 2.80 -61.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069780160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.284 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds