Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30936 * 122.91044 * 2 1 4 4 C 1.29429 * 117.37318 * 180.02562 * 3 2 1 5 5 S 1.70955 * 110.38877 * 359.74784 * 4 3 2 6 6 C 1.35682 * 122.90750 * 180.02562 * 2 1 3 7 7 C 1.46652 * 126.13023 * 359.93815 * 6 2 1 8 8 O 1.21695 * 120.00193 * 356.06174 * 7 6 2 9 9 N 1.34774 * 119.99981 * 176.05608 * 7 6 2 10 10 C 1.46499 * 120.00400 * 6.15442 * 9 7 6 11 11 C 1.50697 * 109.46751 * 277.07880 * 10 9 7 12 12 H 1.07999 * 120.00223 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99917 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99910 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00217 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47012 * 90.00174 * 15 13 11 17 17 H 1.48498 * 109.46997 * 210.00163 * 15 13 11 18 18 H 1.48500 * 109.46774 * 330.00204 * 15 13 11 19 19 C 1.39847 * 120.00010 * 186.15001 * 9 7 6 20 20 C 1.38910 * 120.07157 * 173.38206 * 19 9 7 21 21 C 1.38089 * 119.92707 * 180.27485 * 20 19 9 22 22 C 1.38314 * 120.07041 * 359.45233 * 21 20 19 23 23 C 1.38263 * 120.14149 * 0.29312 * 22 21 20 24 24 C 1.50707 * 119.96056 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.46982 * 0.02562 * 24 23 22 26 26 F 1.39903 * 109.47092 * 120.00112 * 24 23 22 27 27 F 1.39900 * 109.46924 * 240.00270 * 24 23 22 28 28 C 1.38125 * 120.07755 * 359.97438 * 23 22 21 29 29 H 1.08992 * 109.46966 * 269.96314 * 1 2 3 30 30 H 1.09003 * 109.46780 * 29.96389 * 1 2 3 31 31 H 1.09004 * 109.46862 * 149.96153 * 1 2 3 32 32 H 1.07994 * 124.80457 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46775 * 37.07392 * 10 9 7 34 34 H 1.08994 * 109.47384 * 157.07582 * 10 9 7 35 35 H 0.96999 * 120.00251 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.04082 * 0.02562 * 20 19 9 37 37 H 1.07997 * 119.96631 * 179.72553 * 21 20 19 38 38 H 1.07989 * 119.92727 * 180.27653 * 22 21 20 39 39 H 1.08001 * 120.03716 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0992 0.0000 4 6 3.5067 0.9743 -0.0005 5 16 3.9449 -0.6781 0.0060 6 6 2.2442 -1.1391 -0.0005 7 6 1.7195 -2.5086 0.0002 8 8 0.5201 -2.7007 0.0737 9 7 2.5657 -3.5544 -0.0807 10 6 4.0128 -3.3313 -0.0334 11 6 4.5078 -2.9529 -1.4056 12 1 3.8140 -2.8858 -2.2304 13 6 5.8465 -2.6924 -1.6079 14 7 6.6916 -2.7745 -0.6035 15 14 6.4601 -2.2226 -3.3087 16 1 6.4042 -0.7469 -3.4649 17 1 7.8614 -2.6853 -3.4746 18 1 5.6023 -2.8623 -4.3384 19 6 2.0624 -4.8528 -0.2098 20 6 2.9283 -5.9162 -0.4311 21 6 2.4275 -7.1963 -0.5637 22 6 1.0664 -7.4217 -0.4652 23 6 0.2024 -6.3660 -0.2397 24 6 -1.2798 -6.6164 -0.1324 25 9 -1.5348 -7.9826 -0.2928 26 9 -1.7329 -6.2023 1.1248 27 9 -1.9476 -5.8967 -1.1290 28 6 0.6963 -5.0825 -0.1115 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3633 -0.8897 -0.5145 32 1 4.2058 1.7975 -0.0010 33 1 4.2335 -2.5260 0.6673 34 1 4.5108 -4.2440 0.2936 35 1 7.6335 -2.5916 -0.7459 36 1 3.9916 -5.7416 -0.5034 37 1 3.0997 -8.0229 -0.7402 38 1 0.6777 -8.4242 -0.5648 39 1 0.0209 -4.2584 0.0650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069816043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -91.163873 kcal Electronic energy + Delta-G solvation = -31674.313754 eV Core-core repulsion = 26873.884289 eV Total energy + Delta-G solvation = -4800.429465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 370.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97809 -47.52014 -47.41098 -40.61340 -39.18580 -37.99270 -35.75108 -33.22156 -31.56333 -31.52967 -30.21875 -28.06158 -27.34186 -25.81944 -24.38501 -23.66001 -23.11282 -21.76431 -20.51831 -18.41351 -18.29098 -18.18557 -18.03352 -17.57497 -17.14071 -16.32115 -16.13803 -15.76543 -15.07074 -14.90310 -14.66889 -14.41738 -14.34753 -13.99200 -13.88974 -13.87145 -13.66724 -13.60523 -13.42835 -13.15019 -13.04170 -12.79837 -12.58771 -12.46413 -12.40144 -12.06567 -11.68565 -11.64740 -11.40706 -11.12236 -11.03025 -10.59795 -10.56398 -10.42887 -9.66676 -9.21251 -9.03034 -8.92175 -8.73555 -8.67613 -8.13298 -7.56468 -6.63747 -4.66980 0.79230 1.25280 1.59168 2.06696 2.46458 2.84337 2.94783 3.00120 3.08930 3.12243 3.30870 3.55161 3.91552 3.94423 4.01279 4.25086 4.64408 4.70878 4.74722 4.96473 5.18890 5.30592 5.47761 5.55152 5.61455 5.65909 5.70188 5.94235 6.04869 6.23810 6.26793 6.29522 6.41289 6.47194 6.54749 6.66365 6.74575 6.80692 7.28850 7.37357 7.40167 7.67570 8.27579 8.31034 8.45923 8.92219 10.39889 Molecular weight = 370.07amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.004026 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.370863 B = 6953.103512 C = 8981.958721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.128 3.872 3 N -0.497 5.497 4 C -0.088 4.088 5 S 0.376 5.624 6 C -0.333 4.333 7 C 0.603 3.397 8 O -0.527 6.527 9 N -0.536 5.536 10 C 0.219 3.781 11 C -0.539 4.539 12 H 0.073 0.927 13 C 0.080 3.920 14 N -0.870 5.870 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.268 1.268 19 C 0.174 3.826 20 C -0.117 4.117 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.169 4.169 24 C 0.512 3.488 25 F -0.183 7.183 26 F -0.178 7.178 27 F -0.177 7.177 28 C -0.131 4.131 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.275 0.725 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -3.991 1.841 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 N -0.212 5.212 4 C -0.377 4.377 5 S 0.642 5.358 6 C -0.459 4.459 7 C 0.396 3.604 8 O -0.409 6.409 9 N -0.254 5.254 10 C 0.098 3.902 11 C -0.581 4.581 12 H 0.091 0.909 13 C -0.128 4.128 14 N -0.505 5.505 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.192 1.192 19 C 0.078 3.922 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.171 4.171 24 C 0.457 3.543 25 F -0.164 7.164 26 F -0.159 7.159 27 F -0.158 7.158 28 C -0.151 4.151 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.440 -3.821 2.000 6.190 hybrid contribution -0.324 0.311 -1.034 1.128 sum -4.764 -3.511 0.966 5.996 Atomic orbital electron populations 1.20487 0.87249 1.03430 1.02788 1.20436 0.97977 0.85613 0.97538 1.66176 1.05592 1.31684 1.17792 1.29485 0.95976 1.08020 1.04221 1.86359 1.00233 0.92922 1.56299 1.25309 0.99120 0.97579 1.23881 1.16917 0.84996 0.83145 0.75381 1.90315 1.15263 1.83806 1.51545 1.45733 1.10045 1.03396 1.66233 1.19963 0.72721 0.98893 0.98650 1.21428 0.94042 1.48350 0.94262 0.90911 1.24898 0.96052 0.94048 0.97810 1.69887 1.04284 1.45345 1.30992 0.86505 0.78571 0.79504 0.83487 1.19740 1.20405 1.19222 1.17777 0.92061 0.84535 0.97873 1.21344 1.01088 0.91442 0.99854 1.20866 0.94450 0.96591 1.00068 1.20849 0.93539 0.98083 1.00781 1.19803 0.90465 0.96371 1.10469 1.18310 0.88691 0.73447 0.73811 1.93130 1.95250 1.32640 1.95390 1.93204 1.90806 1.90126 1.41807 1.93210 1.82862 1.78054 1.61721 1.22530 0.96199 0.97597 0.98757 0.90984 0.91634 0.89035 0.80045 0.93467 0.91629 0.91523 0.83500 0.84959 0.85269 0.79192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.65 36.01 0.35 -0.97 16 2 C 0.13 2.43 6.79 -83.89 -0.57 1.86 16 3 N -0.50 -9.31 10.50 -11.53 -0.12 -9.43 16 4 C -0.09 -1.51 12.22 51.75 0.63 -0.87 16 5 S 0.38 6.97 15.94 -107.50 -1.71 5.25 16 6 C -0.33 -6.55 6.21 -37.10 -0.23 -6.78 16 7 C 0.60 12.20 7.51 -12.87 -0.10 12.10 16 8 O -0.53 -10.72 10.72 5.19 0.06 -10.66 16 9 N -0.54 -10.59 2.70 -116.21 -0.31 -10.91 16 10 C 0.22 4.45 4.24 -5.20 -0.02 4.43 16 11 C -0.54 -11.74 6.78 -34.44 -0.23 -11.98 16 12 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.08 1.74 4.95 -17.82 -0.09 1.65 16 14 N -0.87 -19.47 13.29 55.43 0.74 -18.73 16 15 Si 0.89 17.84 29.54 -169.99 -5.02 12.82 16 16 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 C 0.17 3.21 6.49 -83.72 -0.54 2.67 16 20 C -0.12 -1.91 9.17 -39.39 -0.36 -2.27 16 21 C -0.10 -1.38 10.04 -39.61 -0.40 -1.78 16 22 C -0.11 -1.56 9.43 -39.54 -0.37 -1.94 16 23 C -0.17 -2.67 5.37 -104.65 -0.56 -3.23 16 24 C 0.51 7.63 3.32 36.01 0.12 7.75 16 25 F -0.18 -2.48 15.97 2.25 0.04 -2.45 16 26 F -0.18 -2.73 17.23 2.25 0.04 -2.69 16 27 F -0.18 -2.77 17.24 2.25 0.04 -2.74 16 28 C -0.13 -2.35 8.60 -39.39 -0.34 -2.69 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.56 6.11 -51.93 -0.32 1.25 16 32 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 33 H 0.05 0.99 4.72 -23.93 -0.11 0.88 16 34 H 0.07 1.35 6.10 -51.93 -0.32 1.03 16 35 H 0.27 5.91 8.31 -40.82 -0.34 5.57 16 36 H 0.15 2.44 6.19 -52.49 -0.32 2.12 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.48 7.15 -52.49 -0.38 1.11 16 39 H 0.19 3.68 4.52 -56.28 -0.25 3.42 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -24.00 348.51 -6.67 -30.67 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -2.94 Total: 5.67 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.72 Total: -2.06 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.30 Total: -39.07 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.11 Total: -7.87 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.02 Total: 12.82 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.71 Total: 5.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -24.00 -6.67 -30.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069816043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.496 kcal (2) G-P(sol) polarization free energy of solvation -24.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds