Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47229 * 300.60600 * 3 2 1 5 5 C 1.36854 * 119.99755 * 263.47309 * 4 3 2 6 6 H 1.08001 * 119.99749 * 140.64775 * 5 4 3 7 7 C 1.39002 * 120.00005 * 320.64159 * 5 4 3 8 8 N 1.31402 * 119.99881 * 164.26771 * 7 5 4 9 9 Si 1.86795 * 120.00124 * 344.27376 * 7 5 4 10 10 H 1.48496 * 109.47746 * 89.60555 * 9 7 5 11 11 H 1.48505 * 109.47056 * 209.60952 * 9 7 5 12 12 H 1.48505 * 109.47066 * 329.60531 * 9 7 5 13 13 C 1.34778 * 120.00278 * 83.46732 * 4 3 2 14 14 O 1.21777 * 120.00011 * 181.21116 * 13 4 3 15 15 C 1.46271 * 119.99893 * 1.21424 * 13 4 3 16 16 C 1.36814 * 125.17792 * 171.57758 * 15 13 4 17 17 C 1.36736 * 114.70581 * 179.72368 * 16 15 13 18 18 C 1.36579 * 114.78238 * 0.50880 * 17 16 15 19 19 C 1.47678 * 125.14457 * 179.78142 * 18 17 16 20 20 C 1.39667 * 120.10319 * 359.96851 * 19 18 17 21 21 C 1.37832 * 119.95477 * 180.29844 * 20 19 18 22 22 C 1.38915 * 120.27552 * 359.46854 * 21 20 19 23 23 C 1.39188 * 120.05346 * 0.19793 * 22 21 20 24 24 C 1.38381 * 119.95996 * 0.11827 * 23 22 21 25 25 O 1.36133 * 120.76821 * 180.20055 * 23 22 21 26 26 C 1.43176 * 116.70619 * 342.74678 * 25 23 22 27 27 C 1.53464 * 108.22115 * 46.25660 * 26 25 23 28 28 O 1.36094 * 119.23502 * 180.02562 * 22 21 20 29 29 S 1.75831 * 109.70438 * 359.51894 * 18 17 16 30 30 H 1.08997 * 109.46977 * 180.60514 * 3 2 1 31 31 H 1.08997 * 109.46945 * 60.60405 * 3 2 1 32 32 H 0.97002 * 119.99991 * 180.02562 * 8 7 5 33 33 H 1.07999 * 122.64678 * 359.97438 * 16 15 13 34 34 H 1.08007 * 122.60736 * 180.28763 * 17 16 15 35 35 H 1.08001 * 120.02490 * 0.08625 * 20 19 18 36 36 H 1.08005 * 119.85829 * 179.74562 * 21 20 19 37 37 H 1.08010 * 120.02030 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.71304 * 286.57304 * 26 25 23 39 39 H 1.09005 * 109.74761 * 165.96257 * 26 25 23 40 40 H 1.09006 * 109.70440 * 180.49293 * 27 26 25 41 41 H 1.09008 * 109.74141 * 59.89997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.7023 1.1887 5 6 3.4514 0.0058 2.3048 6 1 3.2062 -0.3739 3.2857 7 6 4.1275 1.2135 2.1759 8 7 4.1978 2.0391 3.1958 9 14 4.9359 1.6628 0.5530 10 1 3.9629 2.3917 -0.2997 11 1 6.1147 2.5285 0.8102 12 1 5.3729 0.4251 -0.1417 13 6 3.1967 -2.0464 1.1833 14 8 3.5820 -2.6323 2.1790 15 6 2.8426 -2.8013 -0.0185 16 6 3.0558 -4.1405 -0.1994 17 6 2.6352 -4.6284 -1.4055 18 6 2.0807 -3.6979 -2.2375 19 6 1.5569 -3.9723 -3.5907 20 6 1.6072 -5.2670 -4.1122 21 6 1.1231 -5.5185 -5.3779 22 6 0.5743 -4.4909 -6.1348 23 6 0.5149 -3.1998 -5.6183 24 6 1.0052 -2.9393 -4.3507 25 8 -0.0234 -2.1828 -6.3457 26 6 -0.1636 -2.4027 -7.7535 27 6 -0.7767 -3.7938 -7.9633 28 8 0.1021 -4.7631 -7.3818 29 16 2.0782 -2.1255 -1.4506 30 1 2.9708 1.0284 0.0109 31 1 2.9715 -0.5036 -0.8953 32 1 4.6692 2.8821 3.1057 33 1 3.5162 -4.7640 0.5528 34 1 2.7369 -5.6679 -1.6803 35 1 2.0283 -6.0700 -3.5253 36 1 1.1665 -6.5194 -5.7812 37 1 0.9599 -1.9377 -3.9491 38 1 0.8146 -2.3560 -8.2321 39 1 -0.8187 -1.6437 -8.1814 40 1 -0.8862 -3.9902 -9.0299 41 1 -1.7518 -3.8434 -7.4785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071850970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = 15.017713 kcal Electronic energy + Delta-G solvation = -29767.511369 eV Core-core repulsion = 25513.543023 eV Total energy + Delta-G solvation = -4253.968346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 370.082 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52474 -39.34998 -38.53923 -37.57194 -37.01419 -36.13960 -34.83412 -32.50709 -32.05435 -31.20981 -29.74564 -28.29705 -27.85642 -25.97030 -25.02157 -23.75749 -22.99134 -21.27936 -20.59810 -19.22953 -18.86983 -18.51059 -17.75688 -17.42737 -17.05535 -16.90278 -16.07605 -15.74533 -15.53440 -15.33089 -15.15451 -14.74619 -14.39702 -14.26155 -14.17061 -14.00198 -13.95863 -13.49983 -13.31102 -13.01497 -12.79124 -12.66758 -12.42192 -12.37492 -12.22791 -12.05829 -11.84797 -11.64008 -11.46766 -11.41467 -11.06523 -10.94332 -10.75297 -10.27800 -10.12578 -9.44906 -9.25986 -9.02435 -8.72967 -8.45503 -8.19650 -7.71303 -6.63960 -4.28013 0.18461 1.04175 1.37177 1.58568 1.97744 2.57304 2.72371 2.77967 2.85737 2.91110 3.00596 3.05099 3.15859 3.54614 3.76133 3.82148 3.87688 4.10869 4.28222 4.29645 4.38477 4.47364 4.55508 4.76944 4.81295 4.91353 5.02195 5.03230 5.05804 5.09771 5.26503 5.37343 5.45867 5.53735 5.65210 5.81957 5.85155 6.02278 6.24789 6.26073 6.40119 6.52265 6.59482 7.07762 7.21319 7.82089 7.92650 8.15414 8.60611 8.93894 9.32702 10.46356 Molecular weight = 370.08amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002687 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.680495 B =10416.986370 C =11455.835760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.197 3.803 3 C 0.160 3.840 4 N -0.449 5.449 5 C -0.316 4.316 6 H 0.117 0.883 7 C 0.063 3.937 8 N -0.847 5.847 9 Si 0.859 3.141 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.252 1.252 13 C 0.537 3.463 14 O -0.532 6.532 15 C -0.219 4.219 16 C -0.078 4.078 17 C -0.122 4.122 18 C -0.176 4.176 19 C 0.001 3.999 20 C -0.098 4.098 21 C -0.107 4.107 22 C 0.046 3.954 23 C 0.058 3.942 24 C -0.109 4.109 25 O -0.305 6.305 26 C 0.020 3.980 27 C 0.020 3.980 28 O -0.307 6.307 29 S 0.163 5.837 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.281 0.719 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -10.119 -23.898 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.124 4.124 3 C 0.031 3.969 4 N -0.171 5.171 5 C -0.443 4.443 6 H 0.135 0.865 7 C -0.146 4.146 8 N -0.481 5.481 9 Si 0.685 3.315 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.175 1.175 13 C 0.326 3.674 14 O -0.412 6.412 15 C -0.340 4.340 16 C -0.110 4.110 17 C -0.152 4.152 18 C -0.294 4.294 19 C -0.001 4.001 20 C -0.118 4.118 21 C -0.126 4.126 22 C 0.001 3.999 23 C 0.013 3.987 24 C -0.129 4.129 25 O -0.220 6.220 26 C -0.055 4.055 27 C -0.056 4.056 28 O -0.222 6.222 29 S 0.434 5.566 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.893 -8.748 -23.695 26.182 hybrid contribution 1.192 -0.759 -0.664 1.562 sum -5.701 -9.507 -24.359 26.763 Atomic orbital electron populations 1.81055 1.12528 1.08184 1.07650 1.29535 0.95539 0.93630 0.93669 1.19893 0.82228 1.02568 0.92239 1.43503 1.56387 1.04511 1.12672 1.19142 1.36129 1.02970 0.86083 0.86543 1.25436 0.95580 0.95663 0.97872 1.69653 1.38337 1.08868 1.31270 0.87245 0.80489 0.80127 0.83638 1.19085 1.19975 1.17541 1.16900 0.82138 0.81930 0.86409 1.90752 1.49045 1.67942 1.33483 1.25022 1.10412 0.98994 0.99525 1.20395 0.99916 0.93189 0.97507 1.20343 1.01388 1.00078 0.93371 1.23978 1.07958 0.99665 0.97754 1.17728 0.98416 0.92981 0.90954 1.20977 1.00266 0.95991 0.94603 1.20322 1.01028 0.97959 0.93278 1.18986 1.01823 0.92383 0.86722 1.18647 1.00527 0.86090 0.93388 1.20454 1.00013 0.99954 0.92429 1.86353 1.78292 1.37727 1.19633 1.23643 1.02841 0.98468 0.80594 1.23639 0.92980 0.88215 1.00722 1.86295 1.61999 1.46080 1.27810 1.84589 1.57223 1.06959 1.07825 0.85253 0.87300 0.90849 0.82959 0.83979 0.84399 0.84409 0.84729 0.90378 0.85977 0.86040 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.46 18.54 42.15 0.78 -7.68 16 2 C 0.20 3.85 13.07 -20.76 -0.27 3.58 16 3 C 0.16 3.08 3.99 -6.83 -0.03 3.06 16 4 N -0.45 -10.38 2.16 -119.57 -0.26 -10.64 16 5 C -0.32 -8.34 9.38 -15.03 -0.14 -8.48 16 6 H 0.12 3.47 7.93 -52.49 -0.42 3.05 16 7 C 0.06 1.60 5.37 -17.45 -0.09 1.51 16 8 N -0.85 -22.73 13.96 55.50 0.77 -21.95 16 9 Si 0.86 17.84 24.88 -169.99 -4.23 13.61 16 10 H -0.26 -4.89 6.50 56.52 0.37 -4.52 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 12 H -0.25 -5.04 7.11 56.52 0.40 -4.64 16 13 C 0.54 12.30 7.51 -13.03 -0.10 12.21 16 14 O -0.53 -13.85 16.71 5.12 0.09 -13.77 16 15 C -0.22 -4.06 6.21 -36.87 -0.23 -4.29 16 16 C -0.08 -1.24 9.89 -40.64 -0.40 -1.64 16 17 C -0.12 -1.61 9.66 -40.72 -0.39 -2.00 16 18 C -0.18 -2.45 6.41 -36.33 -0.23 -2.68 16 19 C 0.00 0.02 5.87 -105.00 -0.62 -0.60 16 20 C -0.10 -1.02 9.54 -39.20 -0.37 -1.39 16 21 C -0.11 -1.07 9.94 -39.48 -0.39 -1.46 16 22 C 0.05 0.51 6.50 -38.98 -0.25 0.26 16 23 C 0.06 0.71 6.49 -39.18 -0.25 0.45 16 24 C -0.11 -1.40 9.51 -39.02 -0.37 -1.78 16 25 O -0.31 -3.42 10.41 -32.92 -0.34 -3.77 16 26 C 0.02 0.14 7.26 37.40 0.27 0.41 16 27 C 0.02 0.13 7.26 37.40 0.27 0.40 16 28 O -0.31 -3.02 10.41 -32.79 -0.34 -3.36 16 29 S 0.16 2.58 15.26 -107.50 -1.64 0.94 16 30 H 0.13 2.48 3.21 -51.93 -0.17 2.31 16 31 H 0.11 1.84 4.47 -22.03 -0.10 1.74 16 32 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.15 2.29 8.04 -52.49 -0.42 1.87 16 34 H 0.14 1.40 6.90 -52.48 -0.36 1.03 16 35 H 0.14 1.11 6.75 -52.49 -0.35 0.76 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.13 1.74 7.26 -52.48 -0.38 1.36 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -31.83 360.40 -6.83 -38.66 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.48 Total: 4.98 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.61 Total: -2.45 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 1.30 Total: -40.27 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.60 Total: -20.89 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -4.23 Total: 13.61 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.64 Total: 0.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.83 -6.83 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071850970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.674 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds