Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86792 * 120.00290 * 2 1 4 4 H 1.48502 * 109.47486 * 274.99565 * 3 2 1 5 5 H 1.48499 * 109.47202 * 34.99572 * 3 2 1 6 6 H 1.48504 * 109.47433 * 154.99648 * 3 2 1 7 7 C 1.39897 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00125 * 152.82770 * 7 2 1 9 9 C 1.41222 * 119.99732 * 332.82381 * 7 2 1 10 10 C 1.40833 * 120.17480 * 160.87681 * 9 7 2 11 11 C 1.36438 * 119.80898 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18318 * 359.97438 * 11 10 9 13 13 O 1.35684 * 119.81779 * 179.97438 * 12 11 10 14 14 C 1.42893 * 117.00007 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46765 * 180.02562 * 14 13 12 16 16 O 1.21274 * 120.00283 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00005 * 179.97438 * 15 14 13 18 18 C 1.46929 * 120.62695 * 5.08832 * 17 15 14 19 19 C 1.53185 * 108.89490 * 126.45723 * 18 17 15 20 20 C 1.53045 * 109.31260 * 54.56159 * 19 18 17 21 21 C 1.53045 * 109.53704 * 298.63308 * 20 19 18 22 22 C 1.46961 * 120.65582 * 184.89575 * 17 15 14 23 23 H 1.08994 * 109.58134 * 113.68820 * 22 17 15 24 24 C 1.52999 * 109.59419 * 353.39966 * 22 17 15 25 25 N 1.46495 * 109.47088 * 178.88333 * 24 22 17 26 26 C 1.34951 * 126.04012 * 123.94718 * 25 24 22 27 27 C 1.35317 * 107.74695 * 179.83960 * 26 25 24 28 28 C 1.39870 * 107.91829 * 0.42339 * 27 26 25 29 29 N 1.30836 * 108.20598 * 359.73694 * 28 27 26 30 30 C 1.39305 * 120.36835 * 0.26107 * 12 11 10 31 31 C 1.36444 * 120.18148 * 359.47501 * 30 12 11 32 32 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 33 33 H 1.07996 * 120.09796 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.90891 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47594 * 60.00367 * 14 13 12 36 36 H 1.08998 * 109.46949 * 299.99929 * 14 13 12 37 37 H 1.08999 * 109.58521 * 6.59398 * 18 17 15 38 38 H 1.08998 * 109.58062 * 246.31444 * 18 17 15 39 39 H 1.08996 * 109.50167 * 174.51091 * 19 18 17 40 40 H 1.09000 * 109.50216 * 294.57907 * 19 18 17 41 41 H 1.08993 * 109.46052 * 58.65246 * 20 19 18 42 42 H 1.09007 * 109.46068 * 178.63273 * 20 19 18 43 43 H 1.09000 * 109.49645 * 181.31687 * 21 20 19 44 44 H 1.09001 * 109.49991 * 301.38138 * 21 20 19 45 45 H 1.08997 * 109.47513 * 298.88340 * 24 22 17 46 46 H 1.09007 * 109.47203 * 58.88087 * 24 22 17 47 47 H 1.08001 * 126.12231 * 0.02562 * 26 25 24 48 48 H 1.07995 * 126.03743 * 180.16561 * 27 26 25 49 49 H 1.08001 * 125.89817 * 179.76301 * 28 27 26 50 50 H 1.08002 * 119.91244 * 179.72338 * 30 12 11 51 51 H 1.08003 * 120.08902 * 180.25655 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4971 2.6198 0.8030 6 1 3.5892 1.4119 0.5918 7 6 2.0082 -1.2116 -0.0005 8 1 2.9988 -1.2630 -0.4277 9 6 1.4190 -2.3673 0.5575 10 6 1.9070 -3.6443 0.2195 11 6 1.3318 -4.7559 0.7627 12 6 0.2650 -4.6301 1.6498 13 8 -0.3018 -5.7405 2.1852 14 6 -1.3921 -5.5418 3.0872 15 6 -1.8887 -6.8776 3.5770 16 8 -1.3607 -7.8992 3.1919 17 7 -2.9191 -6.9370 4.4438 18 6 -3.6399 -5.7178 4.8344 19 6 -5.1371 -5.9255 4.5857 20 6 -5.6004 -7.1897 5.3133 21 6 -4.8465 -8.4024 4.7626 22 6 -3.3460 -8.2228 5.0133 23 1 -3.1513 -8.2300 6.0857 24 6 -2.5743 -9.3619 4.3442 25 7 -2.9826 -10.6399 4.9325 26 6 -3.4711 -11.7033 4.2604 27 6 -3.7218 -12.6811 5.1615 28 6 -3.3837 -12.1954 6.4288 29 7 -2.9404 -10.9719 6.2928 30 6 -0.2269 -3.3708 1.9856 31 6 0.3405 -2.2489 1.4554 32 1 -0.4850 0.8400 0.0004 33 1 2.7342 -3.7436 -0.4677 34 1 1.7045 -5.7360 0.5042 35 1 -2.1991 -5.0202 2.5726 36 1 -1.0573 -4.9455 3.9360 37 1 -3.2839 -4.8765 4.2397 38 1 -3.4697 -5.5157 5.8919 39 1 -5.6912 -5.0655 4.9620 40 1 -5.3167 -6.0342 3.5161 41 1 -5.3980 -7.0898 6.3796 42 1 -6.6707 -7.3265 5.1579 43 1 -5.1938 -9.3054 5.2648 44 1 -5.0292 -8.4888 3.6915 45 1 -2.7898 -9.3684 3.2758 46 1 -1.5050 -9.2160 4.4983 47 1 -3.6304 -11.7641 3.1939 48 1 -4.1174 -13.6617 4.9416 49 1 -3.4727 -12.7369 7.3590 50 1 -1.0572 -3.2820 2.6706 51 1 -0.0394 -1.2732 1.7200 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071865348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = 43.899149 kcal Electronic energy + Delta-G solvation = -32890.990953 eV Core-core repulsion = 28564.906980 eV Total energy + Delta-G solvation = -4326.083972 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.45229 -40.63644 -38.81275 -37.59374 -36.32603 -34.40951 -33.45909 -33.27109 -31.15485 -30.04859 -29.77264 -29.54859 -28.23561 -26.70178 -25.02043 -24.73567 -22.97426 -21.66251 -21.29466 -21.09173 -20.79673 -20.42793 -19.10868 -17.86422 -17.43650 -17.20672 -16.44416 -16.20859 -16.06660 -15.44326 -15.28236 -15.01817 -14.67985 -14.65058 -14.29121 -14.05720 -14.01725 -13.85447 -13.59422 -13.32974 -13.18083 -12.98342 -12.87519 -12.64271 -12.43233 -12.19689 -12.07124 -11.69726 -11.60706 -11.53290 -11.40712 -11.16908 -11.14557 -11.07444 -11.02246 -10.76826 -10.64717 -10.09901 -9.92271 -9.72445 -9.48348 -9.31783 -8.98947 -8.94971 -8.65450 -7.71941 -7.17788 -6.88267 -4.28798 1.78974 2.18165 2.38241 2.69750 2.70020 2.72989 2.90955 3.02945 3.05919 3.18472 3.86517 3.88037 4.21497 4.34157 4.38759 4.48031 4.54052 4.63652 4.67682 4.74597 4.81265 4.87973 5.05817 5.13451 5.17454 5.26987 5.30727 5.36872 5.45302 5.51368 5.53950 5.60779 5.61411 5.64250 5.70635 5.71970 5.87457 5.93910 5.99914 6.16732 6.22931 6.53043 6.61890 6.83595 6.86704 6.98067 7.02569 7.18971 7.33319 7.48607 7.60219 7.81542 7.91516 7.95772 8.08666 8.35131 8.56200 8.81445 8.92291 10.05400 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.001805 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.915598 B =15512.867110 C =16644.430926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.463 4.463 8 H 0.080 0.920 9 C 0.091 3.909 10 C -0.202 4.202 11 C -0.101 4.101 12 C -0.024 4.024 13 O -0.305 6.305 14 C 0.054 3.946 15 C 0.522 3.478 16 O -0.517 6.517 17 N -0.609 5.609 18 C 0.105 3.895 19 C -0.137 4.137 20 C -0.118 4.118 21 C -0.129 4.129 22 C 0.140 3.860 23 H 0.088 0.912 24 C 0.138 3.862 25 N -0.366 5.366 26 C 0.056 3.944 27 C -0.282 4.282 28 C 0.039 3.961 29 N -0.300 5.300 30 C -0.168 4.168 31 C -0.147 4.147 32 H 0.281 0.719 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.170 0.830 48 H 0.143 0.857 49 H 0.179 0.821 50 H 0.092 0.908 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.879 -13.592 11.355 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.088 3.912 10 C -0.222 4.222 11 C -0.119 4.119 12 C -0.067 4.067 13 O -0.220 6.220 14 C -0.025 4.025 15 C 0.311 3.689 16 O -0.392 6.392 17 N -0.346 5.346 18 C -0.018 4.018 19 C -0.175 4.175 20 C -0.155 4.155 21 C -0.168 4.168 22 C 0.036 3.964 23 H 0.106 0.894 24 C 0.018 3.982 25 N -0.150 5.150 26 C -0.091 4.091 27 C -0.312 4.312 28 C -0.147 4.147 29 N -0.123 5.123 30 C -0.187 4.187 31 C -0.167 4.167 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.126 0.874 46 H 0.132 0.868 47 H 0.187 0.813 48 H 0.161 0.839 49 H 0.196 0.804 50 H 0.110 0.890 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.197 -12.968 11.586 21.830 hybrid contribution -0.348 0.352 -0.387 0.628 sum -13.545 -12.616 11.199 21.634 Atomic orbital electron populations 1.69901 1.07855 1.29487 1.33545 1.25917 0.94508 1.01466 0.91908 0.86427 0.81200 0.80782 0.79145 1.19527 1.19986 1.18249 1.19481 1.02430 0.92674 1.34546 0.90224 1.17583 0.91302 0.91968 0.90321 1.20534 1.04401 0.91891 1.05335 1.19607 0.96053 0.97946 0.98343 1.18521 0.99996 0.84010 1.04151 1.85898 1.45825 1.31301 1.58942 1.22114 0.91820 0.93556 0.95050 1.20559 0.78943 0.91538 0.77875 1.90664 1.57346 1.35120 1.56049 1.48126 1.32763 1.08021 1.45707 1.21864 0.92121 0.86296 1.01507 1.21940 0.95135 0.98678 1.01737 1.21491 0.99896 0.94070 1.00065 1.21975 0.93908 0.98976 1.01921 1.21514 0.94194 0.82133 0.98526 0.89421 1.22831 1.00866 0.77549 0.96918 1.49298 1.48360 1.12610 1.04766 1.22592 0.98888 0.88383 0.99245 1.21474 1.15496 1.01802 0.92380 1.23832 0.99089 0.92856 0.98933 1.77311 1.23856 1.16263 0.94825 1.20524 1.01615 0.92689 1.03831 1.20832 0.99742 0.96849 0.99245 0.90790 0.88134 0.88373 0.90031 0.90006 0.88985 0.90646 0.90119 0.91091 0.91560 0.91386 0.90739 0.91420 0.87383 0.86763 0.81282 0.83881 0.80437 0.88978 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.46 11.21 55.55 0.62 -18.84 16 2 C 0.08 1.97 4.96 -17.34 -0.09 1.89 16 3 Si 0.90 17.97 29.64 -169.99 -5.04 12.94 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.97 9.00 -37.83 -0.34 -12.31 16 8 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 9 C 0.09 2.37 5.61 -106.80 -0.60 1.77 16 10 C -0.20 -4.93 9.74 -39.25 -0.38 -5.31 16 11 C -0.10 -2.35 9.92 -39.83 -0.40 -2.74 16 12 C -0.02 -0.54 6.71 -38.78 -0.26 -0.80 16 13 O -0.30 -6.30 9.65 -38.67 -0.37 -6.68 16 14 C 0.05 0.83 3.61 36.01 0.13 0.96 16 15 C 0.52 7.43 7.69 -10.98 -0.08 7.35 16 16 O -0.52 -8.81 11.91 -14.35 -0.17 -8.98 16 17 N -0.61 -6.55 2.98 -165.20 -0.49 -7.04 16 18 C 0.10 0.83 6.32 -3.71 -0.02 0.81 16 19 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 20 C -0.12 -0.82 5.88 -26.68 -0.16 -0.98 16 21 C -0.13 -1.11 5.15 -26.61 -0.14 -1.25 16 22 C 0.14 1.45 3.06 -67.58 -0.21 1.24 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 C 0.14 1.65 4.35 -4.04 -0.02 1.63 16 25 N -0.37 -4.23 3.10 -61.37 -0.19 -4.42 16 26 C 0.06 0.55 11.45 -17.22 -0.20 0.35 16 27 C -0.28 -2.59 10.80 -40.01 -0.43 -3.02 16 28 C 0.04 0.38 12.03 -17.37 -0.21 0.18 16 29 N -0.30 -3.71 12.43 30.62 0.38 -3.33 16 30 C -0.17 -3.75 8.96 -39.83 -0.36 -4.10 16 31 C -0.15 -3.68 8.72 -39.25 -0.34 -4.02 16 32 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 33 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.08 1.13 6.97 -51.93 -0.36 0.77 16 36 H 0.08 1.13 7.63 -51.93 -0.40 0.74 16 37 H 0.09 0.70 5.96 -51.93 -0.31 0.39 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 1.32 7.06 -51.93 -0.37 0.95 16 46 H 0.11 1.67 6.34 -51.93 -0.33 1.34 16 47 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 49 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 50 H 0.09 1.73 6.27 -52.49 -0.33 1.41 16 51 H 0.12 2.99 6.12 -52.48 -0.32 2.66 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -30.72 410.03 -10.79 -41.51 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.45 Total: 8.12 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -4.26 Total: -19.46 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.32 Total: -33.63 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.54 Total: -15.65 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.04 Total: 12.94 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.72 -10.79 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071865348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.412 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds