Wall clock time and date at job start Tue Mar 31 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00333 * 2 1 4 4 H 1.48494 * 109.47006 * 270.00020 * 3 2 1 5 5 H 1.48507 * 109.46715 * 29.99818 * 3 2 1 6 6 H 1.48502 * 109.47261 * 149.99587 * 3 2 1 7 7 C 1.37881 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46961 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.35972 * 117.00407 * 180.02562 * 11 10 9 13 13 C 1.38796 * 120.49492 * 0.26613 * 12 11 10 14 14 C 1.38783 * 118.44700 * 180.26056 * 13 12 11 15 15 C 1.38092 * 119.36046 * 359.73618 * 14 13 12 16 16 N 1.31960 * 120.95239 * 359.97438 * 15 14 13 17 17 C 1.32286 * 121.69023 * 0.02562 * 16 15 14 18 18 N 1.39494 * 119.72923 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99930 * 359.97438 * 18 17 16 20 20 O 1.21594 * 119.99838 * 359.97438 * 19 18 17 21 21 C 1.47504 * 120.00013 * 180.02562 * 19 18 17 22 22 C 1.39782 * 120.14263 * 359.97438 * 21 19 18 23 23 C 1.37752 * 119.95089 * 179.97438 * 22 21 19 24 24 C 1.38484 * 120.32876 * 0.32336 * 23 22 21 25 25 C 1.38595 * 120.41633 * 359.47599 * 24 23 22 26 26 C 1.38989 * 119.90795 * 0.38760 * 25 24 23 27 27 O 1.35813 * 120.86598 * 180.17538 * 26 25 24 28 28 C 1.43170 * 116.74668 * 342.66520 * 27 26 25 29 29 C 1.53475 * 108.25292 * 46.16585 * 28 27 26 30 30 O 1.36142 * 119.37052 * 179.97438 * 25 24 23 31 31 H 0.97000 * 119.99775 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.46975 * 60.00026 * 9 7 2 33 33 H 1.08996 * 109.46978 * 299.99907 * 9 7 2 34 34 H 1.08999 * 109.47279 * 60.00182 * 10 9 7 35 35 H 1.08996 * 109.47174 * 299.99757 * 10 9 7 36 36 H 1.07998 * 120.77861 * 359.97328 * 13 12 11 37 37 H 1.08003 * 120.32438 * 179.71152 * 14 13 12 38 38 H 1.07994 * 119.52116 * 180.02562 * 15 14 13 39 39 H 0.97001 * 120.00005 * 179.97438 * 18 17 16 40 40 H 1.07991 * 120.02565 * 359.97276 * 22 21 19 41 41 H 1.08002 * 119.83131 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.79040 * 179.72422 * 24 23 22 43 43 H 1.08998 * 109.70869 * 286.47892 * 28 27 26 44 44 H 1.08994 * 109.74640 * 165.87354 * 28 27 26 45 45 H 1.08998 * 109.71338 * 180.65368 * 29 28 27 46 46 H 1.09000 * 109.74623 * 60.04315 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 8 1.5308 -4.8997 0.0012 12 6 2.2713 -6.0401 0.0028 13 6 3.6579 -5.9795 0.0104 14 6 4.3716 -7.1697 0.0061 15 6 3.6877 -8.3693 0.0001 16 7 2.3684 -8.3984 -0.0012 17 6 1.6488 -7.2884 0.0027 18 7 0.2561 -7.3668 0.0007 19 6 -0.3511 -8.5701 -0.0058 20 8 0.3152 -9.5873 -0.0104 21 6 -1.8238 -8.6531 -0.0086 22 6 -2.5926 -7.4857 -0.0040 23 6 -3.9677 -7.5678 -0.0071 24 6 -4.5945 -8.8027 -0.0081 25 6 -3.8463 -9.9693 -0.0169 26 6 -2.4581 -9.9023 -0.0166 27 8 -1.7059 -11.0331 -0.0287 28 6 -2.3652 -12.2494 0.3397 29 6 -3.7079 -12.3118 -0.4010 30 8 -4.4846 -11.1718 -0.0172 31 1 -0.4850 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 2.8712 -3.6039 0.8923 35 1 2.8726 -3.6047 -0.8877 36 1 4.1695 -5.0284 0.0148 37 1 5.4516 -7.1579 0.0071 38 1 4.2405 -9.2970 -0.0028 39 1 -0.2754 -6.5554 0.0039 40 1 -2.1089 -6.5202 0.0021 41 1 -4.5598 -6.6646 -0.0039 42 1 -5.6731 -8.8569 -0.0061 43 1 -2.5381 -12.2624 1.4158 44 1 -1.7491 -13.1027 0.0561 45 1 -4.2362 -13.2253 -0.1282 46 1 -3.5360 -12.2940 -1.4772 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071894162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:33 Heat of formation + Delta-G solvation = -64.687676 kcal Electronic energy + Delta-G solvation = -32539.381187 eV Core-core repulsion = 27975.036780 eV Total energy + Delta-G solvation = -4564.344407 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63438 -40.78590 -39.26474 -37.86696 -37.65172 -37.26268 -34.76977 -33.46965 -31.86320 -31.48450 -31.24635 -30.38519 -28.97252 -28.69226 -25.47566 -25.19322 -24.59215 -23.23265 -22.68234 -21.28329 -21.09797 -20.32351 -19.19118 -18.39606 -17.81595 -17.67268 -16.96977 -16.74795 -16.15619 -15.87517 -15.77738 -15.68427 -15.29494 -14.94870 -14.88204 -14.79471 -14.58050 -14.48407 -14.17772 -14.03632 -13.87797 -13.54320 -13.15744 -12.83310 -12.44368 -12.40139 -12.15048 -11.99694 -11.91487 -11.48045 -11.39625 -11.06519 -10.99147 -10.95644 -10.67836 -10.65347 -10.13775 -10.03895 -9.76792 -9.40656 -9.19306 -8.99036 -8.93820 -8.51931 -8.36491 -7.62120 -6.17799 -4.22512 0.53796 1.03572 1.31393 1.47984 2.66074 2.84841 2.90659 2.93875 3.22849 3.29055 3.31225 3.54541 3.61244 3.86514 4.08083 4.22250 4.34145 4.47310 4.51370 4.58064 4.69216 4.82771 4.86003 4.97466 4.98570 5.09575 5.14145 5.19200 5.19732 5.30309 5.40837 5.49262 5.74688 5.75896 5.88099 5.91190 6.08544 6.10970 6.21014 6.28001 6.38907 6.55143 6.58005 6.67310 7.09270 7.30787 7.35672 7.53198 7.65215 7.86288 8.12181 8.14965 8.40213 8.82622 9.42374 10.93631 Molecular weight = 370.14amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.002247 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.410417 B =12459.105950 C =15030.238988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.067 3.933 13 C -0.147 4.147 14 C -0.161 4.161 15 C 0.076 3.924 16 N -0.443 5.443 17 C 0.332 3.668 18 N -0.649 5.649 19 C 0.550 3.450 20 O -0.456 6.456 21 C -0.133 4.133 22 C -0.080 4.080 23 C -0.121 4.121 24 C -0.087 4.087 25 C 0.035 3.965 26 C 0.110 3.890 27 O -0.270 6.270 28 C 0.015 3.985 29 C 0.019 3.981 30 O -0.306 6.306 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.422 0.578 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -22.662 -0.026 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.015 3.985 13 C -0.174 4.174 14 C -0.182 4.182 15 C -0.081 4.081 16 N -0.159 5.159 17 C 0.099 3.901 18 N -0.298 5.298 19 C 0.336 3.664 20 O -0.325 6.325 21 C -0.137 4.137 22 C -0.099 4.099 23 C -0.139 4.139 24 C -0.106 4.106 25 C -0.010 4.010 26 C 0.062 3.938 27 O -0.183 6.183 28 C -0.060 4.060 29 C -0.056 4.056 30 O -0.221 6.221 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.261 0.739 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.096 0.904 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.083 -24.161 -0.029 24.915 hybrid contribution 0.861 2.108 -0.008 2.277 sum -5.222 -22.052 -0.037 22.662 Atomic orbital electron populations 1.69961 1.06084 1.27066 1.49547 1.24977 0.94918 0.99392 0.94812 0.86490 0.79760 0.82904 0.78261 1.20471 1.21017 1.19754 1.20947 0.93065 0.90133 1.52465 0.92349 1.19126 0.94141 0.88901 0.98895 1.23394 0.97260 0.80296 0.99846 1.86091 1.36274 1.12907 1.87627 1.19581 0.91147 0.87044 1.00697 1.21600 0.92202 1.00348 1.03255 1.21889 1.01163 0.92539 1.02634 1.22411 0.88803 0.97869 0.99020 1.67640 1.07855 1.26881 1.13479 1.17751 0.84633 0.86981 1.00722 1.43332 1.03819 1.10203 1.72455 1.18025 0.86904 0.83419 0.78034 1.90903 1.64908 1.33467 1.43222 1.19287 0.93106 0.91168 1.10188 1.21284 0.94188 0.97049 0.97331 1.20894 0.94205 0.97308 1.01515 1.20634 1.00483 0.89385 1.00109 1.18764 0.89394 0.86849 1.05968 1.18828 0.88571 0.87102 0.99268 1.86608 1.35581 1.13249 1.82819 1.23721 0.94716 0.87371 1.00239 1.23675 0.93056 0.88710 1.00207 1.86328 1.37873 1.13301 1.84571 0.92647 0.95324 0.95321 0.92933 0.92945 0.83734 0.84814 0.82652 0.73912 0.84152 0.83958 0.84301 0.90354 0.85808 0.85952 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.02 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.07 1.30 4.70 37.15 0.17 1.47 16 11 O -0.32 -5.84 9.38 -19.65 -0.18 -6.03 16 12 C 0.07 1.13 6.72 -38.91 -0.26 0.87 16 13 C -0.15 -2.18 9.14 -39.17 -0.36 -2.53 16 14 C -0.16 -2.05 10.10 -39.43 -0.40 -2.45 16 15 C 0.08 1.06 11.17 -17.55 -0.20 0.86 16 16 N -0.44 -7.70 7.87 -12.24 -0.10 -7.80 16 17 C 0.33 5.73 7.44 -154.50 -1.15 4.58 16 18 N -0.65 -10.25 5.34 -12.25 -0.07 -10.31 16 19 C 0.55 9.00 7.73 -12.48 -0.10 8.90 16 20 O -0.46 -8.75 13.35 -16.87 -0.23 -8.97 16 21 C -0.13 -1.83 5.89 -104.84 -0.62 -2.45 16 22 C -0.08 -0.89 9.53 -39.18 -0.37 -1.26 16 23 C -0.12 -1.14 10.02 -39.67 -0.40 -1.53 16 24 C -0.09 -0.85 9.95 -39.36 -0.39 -1.24 16 25 C 0.04 0.40 6.49 -39.17 -0.25 0.15 16 26 C 0.11 1.47 6.51 -38.60 -0.25 1.22 16 27 O -0.27 -3.67 8.42 -47.39 -0.40 -4.07 16 28 C 0.02 0.13 7.26 37.40 0.27 0.40 16 29 C 0.02 0.13 7.26 37.40 0.27 0.41 16 30 O -0.31 -3.11 10.42 -33.03 -0.34 -3.46 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.98 7.68 -51.93 -0.40 0.59 16 35 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 36 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.42 5.87 6.07 -40.82 -0.25 5.63 16 40 H 0.14 1.37 6.40 -52.49 -0.34 1.03 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -34.74 390.18 -9.80 -44.54 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.49 Total: 4.14 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -4.59 Total: -4.87 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.57 Total: -42.74 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.15 Total: -22.52 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.74 -9.80 -44.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071894162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.150 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds