Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38309 * 119.96277 * 2 1 4 4 C 1.38262 * 120.14968 * 179.97438 * 3 2 1 5 5 C 1.38125 * 120.07497 * 359.74917 * 4 3 2 6 6 C 1.38894 * 119.92155 * 0.48097 * 5 4 3 7 7 N 1.39672 * 120.06947 * 179.79162 * 6 5 4 8 8 C 1.46504 * 120.00004 * 204.72436 * 7 6 5 9 9 C 1.50704 * 109.46911 * 276.44826 * 8 7 6 10 10 H 1.08006 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99938 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00228 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46819 * 90.00175 * 13 11 9 15 15 H 1.48496 * 109.47267 * 210.00131 * 13 11 9 16 16 H 1.48495 * 109.47049 * 330.00176 * 13 11 9 17 17 S 1.65599 * 120.00153 * 24.72589 * 7 6 5 18 18 O 1.42097 * 106.40446 * 32.33453 * 17 7 6 19 19 O 1.42107 * 106.40165 * 165.25437 * 17 7 6 20 20 C 1.76193 * 107.21772 * 278.79091 * 17 7 6 21 21 C 1.37977 * 119.92122 * 115.23741 * 20 17 7 22 22 C 1.39617 * 119.84036 * 179.73327 * 21 20 17 23 23 C 1.43206 * 120.14566 * 180.24981 * 22 21 20 24 24 N 8.61052 * 165.18686 * 329.47749 * 2 1 3 25 25 C 1.39649 * 119.70553 * 0.53661 * 22 21 20 26 26 C 1.37935 * 119.84367 * 359.73557 * 25 22 21 27 27 C 1.38347 * 119.92859 * 295.51045 * 20 17 7 28 28 C 1.50692 * 119.84237 * 0.02562 * 27 20 17 29 29 C 1.38080 * 119.96272 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46808 * 270.02223 * 1 2 3 31 31 H 1.08993 * 109.47111 * 30.02062 * 1 2 3 32 32 H 1.08991 * 109.46988 * 150.02553 * 1 2 3 33 33 H 1.08007 * 119.92556 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.95979 * 179.97438 * 4 3 2 35 35 H 1.07996 * 120.03860 * 180.27162 * 5 4 3 36 36 H 1.08999 * 109.46900 * 36.44622 * 8 7 6 37 37 H 1.08994 * 109.47380 * 156.45102 * 8 7 6 38 38 H 0.97006 * 119.99571 * 180.02562 * 12 11 9 39 39 H 1.07993 * 120.07422 * 0.02562 * 21 20 17 40 40 H 1.08000 * 120.08154 * 179.71096 * 25 22 21 41 41 H 1.07998 * 119.92364 * 179.97438 * 26 25 22 42 42 H 1.09006 * 109.47342 * 83.93595 * 28 27 20 43 43 H 1.09002 * 109.47227 * 203.92958 * 28 27 20 44 44 H 1.09004 * 109.47432 * 323.93109 * 28 27 20 45 45 H 1.08003 * 120.03698 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 0.0005 5 6 4.2765 0.0097 0.0063 6 6 3.5859 -1.1954 0.0015 7 7 4.2867 -2.4035 0.0029 8 6 3.6598 -3.6146 -0.5323 9 6 2.7964 -4.2448 0.5300 10 1 2.7224 -3.7890 1.5064 11 6 2.1009 -5.4032 0.2556 12 7 1.3470 -5.9528 1.1825 13 14 2.2282 -6.1912 -1.4333 14 1 3.3542 -7.1593 -1.4442 15 1 0.9618 -6.9014 -1.7450 16 1 2.4698 -5.1394 -2.4534 17 16 5.8263 -2.4671 0.6096 18 8 5.8835 -1.5115 1.6597 19 8 6.1285 -3.8434 0.7938 20 6 6.9087 -1.8847 -0.6527 21 6 7.6248 -0.7207 -0.4623 22 6 8.4863 -0.2637 -1.4615 23 6 9.2366 0.9407 -1.2686 24 7 9.8314 1.8964 -1.1181 25 6 8.6085 -0.9831 -2.6522 26 6 7.8824 -2.1421 -2.8315 27 6 7.0346 -2.5924 -1.8348 28 6 6.2442 -3.8592 -2.0381 29 6 2.1967 -1.1963 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6560 2.1325 -0.0004 34 1 4.1167 2.1402 0.0001 35 1 5.3565 0.0140 0.0112 36 1 3.0445 -3.3549 -1.3938 37 1 4.4330 -4.3196 -0.8374 38 1 0.8580 -6.7681 0.9895 39 1 7.5226 -0.1671 0.4593 40 1 9.2695 -0.6326 -3.4310 41 1 7.9756 -2.6992 -3.7520 42 1 5.2446 -3.6105 -2.3948 43 1 6.7468 -4.4869 -2.7740 44 1 6.1694 -4.3965 -1.0927 45 1 1.6567 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071908108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = 21.616322 kcal Electronic energy + Delta-G solvation = -31980.254722 eV Core-core repulsion = 27862.405608 eV Total energy + Delta-G solvation = -4117.849114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.97172 -39.30913 -37.29682 -36.75256 -35.96937 -35.59013 -33.25146 -32.86573 -32.08984 -31.69777 -29.66977 -28.04506 -27.66723 -26.37936 -23.72171 -23.04334 -22.68444 -21.57295 -21.20918 -20.08243 -18.38124 -17.38816 -17.08267 -16.56741 -16.39047 -16.00686 -15.90764 -15.50713 -14.74145 -14.64597 -14.48184 -14.35531 -14.17842 -13.73232 -13.54980 -13.47195 -13.34022 -13.23113 -12.79481 -12.72907 -12.67724 -12.62642 -12.43445 -12.32819 -11.99770 -11.92813 -11.84744 -11.78640 -11.54102 -11.44065 -11.17460 -10.98920 -10.85986 -10.72045 -10.52065 -10.35066 -9.82215 -9.68332 -9.33567 -9.10151 -8.74831 -8.33893 -7.56148 -6.23841 -4.25942 0.23371 0.48124 0.67982 1.71430 1.84625 2.37442 2.45935 3.08730 3.16204 3.18428 3.25127 3.42263 3.50606 3.89170 4.21512 4.23040 4.30424 4.42193 4.51648 4.61641 4.92741 5.01270 5.08806 5.11062 5.15791 5.29067 5.31143 5.42411 5.49450 5.54380 5.58154 5.65195 5.73092 5.74906 5.91248 5.93126 6.05617 6.08460 6.11263 6.28711 6.33321 6.43340 6.48916 6.65713 6.74705 6.94151 7.07155 7.11831 7.17698 7.33455 7.55618 8.29202 8.80764 9.32367 10.88577 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.004630 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.030073 B = 6046.198114 C = 7943.997730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.064 4.064 3 C -0.155 4.155 4 C -0.088 4.088 5 C -0.181 4.181 6 C 0.194 3.806 7 N -0.915 5.915 8 C 0.201 3.799 9 C -0.542 4.542 10 H 0.083 0.917 11 C 0.081 3.919 12 N -0.885 5.885 13 Si 0.862 3.138 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.262 1.262 17 S 2.685 3.315 18 O -0.950 6.950 19 O -0.927 6.927 20 C -0.686 4.686 21 C 0.030 3.970 22 C -0.060 4.060 23 C 0.258 3.742 24 N -0.414 5.414 25 C -0.016 4.016 26 C -0.142 4.142 27 C 0.061 3.939 28 C -0.196 4.196 29 C -0.129 4.129 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.268 0.732 39 H 0.154 0.846 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.145 9.071 -10.197 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.065 4.065 3 C -0.175 4.175 4 C -0.107 4.107 5 C -0.203 4.203 6 C 0.097 3.903 7 N -0.740 5.740 8 C 0.080 3.920 9 C -0.580 4.580 10 H 0.101 0.899 11 C -0.123 4.123 12 N -0.522 5.522 13 Si 0.688 3.312 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.186 1.186 17 S 2.775 3.225 18 O -0.940 6.940 19 O -0.917 6.917 20 C -0.770 4.770 21 C 0.008 3.992 22 C -0.064 4.064 23 C -0.058 4.058 24 N -0.089 5.089 25 C -0.037 4.037 26 C -0.161 4.161 27 C 0.059 3.941 28 C -0.251 4.251 29 C -0.151 4.151 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.138 0.862 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.265 9.993 -9.128 15.859 hybrid contribution 0.096 -0.630 -1.520 1.648 sum 8.361 9.363 -10.648 16.461 Atomic orbital electron populations 1.20774 0.91310 1.02425 1.02379 1.19797 0.95924 0.92641 0.98144 1.20848 0.93974 0.97247 1.05384 1.20674 0.94095 0.96699 0.99206 1.20856 0.99212 0.91939 1.08312 1.17456 0.92378 0.83653 0.96793 1.55352 1.29378 1.14482 1.74770 1.20157 0.95044 0.80480 0.96316 1.21254 1.27455 1.09537 0.99784 0.89855 1.24810 0.94562 0.96169 0.96776 1.69880 1.28958 1.20076 1.33267 0.87065 0.78601 0.80595 0.84930 1.19353 1.20677 1.18645 1.02507 0.72513 0.73964 0.73530 1.93577 1.86153 1.63296 1.50966 1.93580 1.83175 1.31140 1.83788 1.31230 1.20791 1.07174 1.17801 1.20973 0.88979 0.91652 0.97594 1.15937 1.00920 0.92190 0.97350 1.25518 0.93429 0.92799 0.94016 1.81248 1.09557 1.10884 1.07256 1.21423 0.95071 0.92577 0.94600 1.21158 0.97924 0.97118 0.99889 1.19864 0.90774 0.93230 0.90252 1.22192 1.00941 0.94455 1.07542 1.21308 0.92281 0.99518 1.01988 0.91157 0.92041 0.91221 0.86615 0.86257 0.86922 0.93737 0.92811 0.92219 0.82885 0.84204 0.83807 0.88095 0.89113 0.86223 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 36.01 0.36 -1.06 16 2 C -0.06 -0.99 5.88 -104.65 -0.62 -1.60 16 3 C -0.16 -2.16 9.70 -39.55 -0.38 -2.55 16 4 C -0.09 -1.26 10.04 -39.61 -0.40 -1.65 16 5 C -0.18 -2.95 8.55 -39.38 -0.34 -3.29 16 6 C 0.19 3.56 6.07 -83.79 -0.51 3.06 16 7 N -0.91 -17.52 2.92 -59.81 -0.17 -17.70 16 8 C 0.20 4.19 2.22 -5.19 -0.01 4.18 16 9 C -0.54 -13.84 8.31 -34.44 -0.29 -14.13 16 10 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 11 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 12 N -0.88 -25.08 13.96 55.43 0.77 -24.31 16 13 Si 0.86 18.76 27.47 -169.99 -4.67 14.09 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 16 H -0.26 -5.14 6.54 56.52 0.37 -4.77 16 17 S 2.69 49.16 4.46 -107.50 -0.48 48.68 16 18 O -0.95 -18.67 14.78 -57.17 -0.85 -19.52 16 19 O -0.93 -19.11 14.38 -57.17 -0.82 -19.93 16 20 C -0.69 -9.57 5.32 -39.64 -0.21 -9.78 16 21 C 0.03 0.37 7.80 -39.16 -0.31 0.06 16 22 C -0.06 -0.63 5.73 -106.93 -0.61 -1.24 16 23 C 0.26 2.96 15.33 -22.48 -0.34 2.61 16 24 N -0.41 -5.54 18.54 41.82 0.78 -4.76 16 25 C -0.02 -0.14 9.76 -39.17 -0.38 -0.52 16 26 C -0.14 -1.26 9.65 -39.64 -0.38 -1.64 16 27 C 0.06 0.73 5.88 -104.53 -0.61 0.12 16 28 C -0.20 -2.44 7.86 36.00 0.28 -2.16 16 29 C -0.13 -2.36 8.69 -39.38 -0.34 -2.70 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.11 1.68 4.12 -52.49 -0.22 1.46 16 36 H 0.04 0.87 6.87 -51.93 -0.36 0.52 16 37 H 0.05 1.06 3.59 -51.93 -0.19 0.88 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.15 1.80 7.15 -52.49 -0.38 1.43 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.10 1.25 6.55 -51.93 -0.34 0.91 16 43 H 0.09 0.83 8.04 -51.93 -0.42 0.42 16 44 H 0.12 1.83 3.98 -51.93 -0.21 1.62 16 45 H 0.15 3.11 6.10 -52.48 -0.32 2.79 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -31.57 378.86 -9.89 -41.45 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.96 Total: 6.54 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -5.19 Total: -30.26 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.37 Total: -46.77 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.67 Total: -39.45 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.67 Total: 14.09 kcal Atomic # 16 Polarization: 49.16 SS G_CDS: -0.48 Total: 48.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.57 -9.89 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071908108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.070 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds