Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38309 * 119.96277 * 2 1 4 4 C 1.38262 * 120.14968 * 179.97438 * 3 2 1 5 5 C 1.38125 * 120.07497 * 359.74917 * 4 3 2 6 6 C 1.38894 * 119.92155 * 0.48097 * 5 4 3 7 7 N 1.39672 * 120.06947 * 179.79162 * 6 5 4 8 8 C 1.46504 * 120.00004 * 204.72436 * 7 6 5 9 9 C 1.50704 * 109.46911 * 276.44826 * 8 7 6 10 10 H 1.08006 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99938 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00228 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46819 * 90.00175 * 13 11 9 15 15 H 1.48496 * 109.47267 * 210.00131 * 13 11 9 16 16 H 1.48495 * 109.47049 * 330.00176 * 13 11 9 17 17 S 1.65599 * 120.00153 * 24.72589 * 7 6 5 18 18 O 1.42097 * 106.40446 * 32.33453 * 17 7 6 19 19 O 1.42107 * 106.40165 * 165.25437 * 17 7 6 20 20 C 1.76193 * 107.21772 * 278.79091 * 17 7 6 21 21 C 1.37977 * 119.92122 * 115.23741 * 20 17 7 22 22 C 1.39617 * 119.84036 * 179.73327 * 21 20 17 23 23 C 1.43206 * 120.14566 * 180.24981 * 22 21 20 24 24 N 8.61052 * 165.18686 * 329.47749 * 2 1 3 25 25 C 1.39649 * 119.70553 * 0.53661 * 22 21 20 26 26 C 1.37935 * 119.84367 * 359.73557 * 25 22 21 27 27 C 1.38347 * 119.92859 * 295.51045 * 20 17 7 28 28 C 1.50692 * 119.84237 * 0.02562 * 27 20 17 29 29 C 1.38080 * 119.96272 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46808 * 270.02223 * 1 2 3 31 31 H 1.08993 * 109.47111 * 30.02062 * 1 2 3 32 32 H 1.08991 * 109.46988 * 150.02553 * 1 2 3 33 33 H 1.08007 * 119.92556 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.95979 * 179.97438 * 4 3 2 35 35 H 1.07996 * 120.03860 * 180.27162 * 5 4 3 36 36 H 1.08999 * 109.46900 * 36.44622 * 8 7 6 37 37 H 1.08994 * 109.47380 * 156.45102 * 8 7 6 38 38 H 0.97006 * 119.99571 * 180.02562 * 12 11 9 39 39 H 1.07993 * 120.07422 * 0.02562 * 21 20 17 40 40 H 1.08000 * 120.08154 * 179.71096 * 25 22 21 41 41 H 1.07998 * 119.92364 * 179.97438 * 26 25 22 42 42 H 1.09006 * 109.47342 * 83.93595 * 28 27 20 43 43 H 1.09002 * 109.47227 * 203.92958 * 28 27 20 44 44 H 1.09004 * 109.47432 * 323.93109 * 28 27 20 45 45 H 1.08003 * 120.03698 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 0.0005 5 6 4.2765 0.0097 0.0063 6 6 3.5859 -1.1954 0.0015 7 7 4.2867 -2.4035 0.0029 8 6 3.6598 -3.6146 -0.5323 9 6 2.7964 -4.2448 0.5300 10 1 2.7224 -3.7890 1.5064 11 6 2.1009 -5.4032 0.2556 12 7 1.3470 -5.9528 1.1825 13 14 2.2282 -6.1912 -1.4333 14 1 3.3542 -7.1593 -1.4442 15 1 0.9618 -6.9014 -1.7450 16 1 2.4698 -5.1394 -2.4534 17 16 5.8263 -2.4671 0.6096 18 8 5.8835 -1.5115 1.6597 19 8 6.1285 -3.8434 0.7938 20 6 6.9087 -1.8847 -0.6527 21 6 7.6248 -0.7207 -0.4623 22 6 8.4863 -0.2637 -1.4615 23 6 9.2366 0.9407 -1.2686 24 7 9.8314 1.8964 -1.1181 25 6 8.6085 -0.9831 -2.6522 26 6 7.8824 -2.1421 -2.8315 27 6 7.0346 -2.5924 -1.8348 28 6 6.2442 -3.8592 -2.0381 29 6 2.1967 -1.1963 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6560 2.1325 -0.0004 34 1 4.1167 2.1402 0.0001 35 1 5.3565 0.0140 0.0112 36 1 3.0445 -3.3549 -1.3938 37 1 4.4330 -4.3196 -0.8374 38 1 0.8580 -6.7681 0.9895 39 1 7.5226 -0.1671 0.4593 40 1 9.2695 -0.6326 -3.4310 41 1 7.9756 -2.6992 -3.7520 42 1 5.2446 -3.6105 -2.3948 43 1 6.7468 -4.4869 -2.7740 44 1 6.1694 -4.3965 -1.0927 45 1 1.6567 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071908108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = 2.460124 kcal Electronic energy + Delta-G solvation = -31981.085397 eV Core-core repulsion = 27862.405608 eV Total energy + Delta-G solvation = -4118.679789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87353 -40.55396 -38.73838 -37.73960 -37.36947 -37.08317 -34.70036 -34.16116 -33.38541 -32.58660 -31.09933 -29.45113 -28.77315 -27.59858 -24.63713 -24.59879 -23.71718 -22.88105 -22.52073 -21.09264 -19.73497 -19.13911 -18.54658 -17.97844 -17.54364 -17.01715 -16.94318 -16.71229 -16.24184 -16.02200 -15.57212 -15.43748 -15.17728 -14.90971 -14.76172 -14.64464 -14.54894 -14.33684 -14.12843 -14.01183 -13.90830 -13.89110 -13.62013 -13.47178 -13.37093 -13.17215 -13.04646 -12.98296 -12.78822 -12.68352 -12.61621 -12.32880 -12.25830 -12.10733 -11.78465 -11.71581 -11.57099 -10.96399 -10.75200 -10.56852 -9.97497 -9.58729 -8.90414 -8.27281 -6.34595 -0.91659 -0.55591 -0.23864 0.47860 0.58837 1.39449 1.43106 1.48025 1.50658 1.56583 1.82129 2.37004 2.49264 2.57902 2.66338 2.95021 3.05337 3.17125 3.55815 3.58132 3.69071 3.82663 3.98854 4.09521 4.16564 4.28234 4.32998 4.44339 4.50648 4.53674 4.57368 4.67239 4.70473 4.75294 4.86497 4.88408 4.93061 4.97644 4.99180 5.12712 5.15358 5.20911 5.35884 5.42066 5.51715 5.56864 5.67274 5.70069 5.86350 6.25138 6.28711 6.29755 6.67716 7.27364 8.89445 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.004630 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.030073 B = 6046.198114 C = 7943.997730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.192 4.192 6 C 0.169 3.831 7 N -0.922 5.922 8 C 0.211 3.789 9 C -0.543 4.543 10 H 0.028 0.972 11 C 0.017 3.983 12 N -0.942 5.942 13 Si 0.929 3.071 14 H -0.259 1.259 15 H -0.282 1.282 16 H -0.222 1.222 17 S 2.680 3.320 18 O -0.980 6.980 19 O -0.966 6.966 20 C -0.688 4.688 21 C 0.020 3.980 22 C -0.057 4.057 23 C 0.280 3.720 24 N -0.448 5.448 25 C 0.008 3.992 26 C -0.125 4.125 27 C 0.052 3.948 28 C -0.205 4.205 29 C -0.160 4.160 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.268 0.732 39 H 0.148 0.852 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 11.197 -14.803 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.166 4.166 4 C -0.102 4.102 5 C -0.214 4.214 6 C 0.073 3.927 7 N -0.747 5.747 8 C 0.088 3.912 9 C -0.582 4.582 10 H 0.046 0.954 11 C -0.182 4.182 12 N -0.582 5.582 13 Si 0.749 3.251 14 H -0.183 1.183 15 H -0.208 1.208 16 H -0.145 1.145 17 S 2.777 3.223 18 O -0.970 6.970 19 O -0.956 6.956 20 C -0.778 4.778 21 C -0.002 4.002 22 C -0.061 4.061 23 C -0.035 4.035 24 N -0.123 5.123 25 C -0.012 4.012 26 C -0.143 4.143 27 C 0.050 3.950 28 C -0.260 4.260 29 C -0.182 4.182 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.140 0.860 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.201 0.799 41 H 0.205 0.795 42 H 0.118 0.882 43 H 0.147 0.853 44 H 0.104 0.896 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.126 12.135 -13.681 20.904 hybrid contribution -0.437 -1.153 -0.024 1.233 sum 9.689 10.981 -13.706 20.058 Atomic orbital electron populations 1.20822 0.89567 1.03569 1.02782 1.20131 0.97350 0.92270 0.97201 1.21261 0.94085 0.97891 1.03366 1.21154 0.94570 0.97224 0.97285 1.21103 0.99925 0.91880 1.08461 1.17736 0.92559 0.84101 0.98338 1.55205 1.30051 1.14316 1.75105 1.19953 0.94866 0.81416 0.94915 1.21456 1.28201 1.09584 0.98935 0.95385 1.25828 0.93911 0.96757 1.01684 1.70066 1.30830 1.20998 1.36275 0.86000 0.78687 0.80422 0.79944 1.18347 1.20760 1.14478 1.02071 0.72763 0.73145 0.74367 1.93520 1.86565 1.63469 1.53493 1.93535 1.83631 1.33269 1.85163 1.30313 1.21175 1.08903 1.17449 1.20940 0.89647 0.91270 0.98305 1.15929 1.00373 0.92022 0.97793 1.25509 0.92624 0.92407 0.92991 1.81284 1.10810 1.11938 1.08307 1.21933 0.93990 0.91215 0.94078 1.21581 0.95678 0.96987 1.00082 1.20015 0.91703 0.92971 0.90331 1.22215 1.01787 0.95144 1.06890 1.21214 0.92622 0.99551 1.04834 0.91046 0.88821 0.92146 0.82842 0.82749 0.86004 0.92238 0.91199 0.92255 0.83389 0.79918 0.79468 0.88205 0.85266 0.89590 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 10.01 71.24 0.71 -2.03 16 2 C -0.07 -2.11 5.88 -19.88 -0.12 -2.22 16 3 C -0.15 -3.75 9.70 22.29 0.22 -3.53 16 4 C -0.08 -2.21 10.04 22.25 0.22 -1.99 16 5 C -0.19 -6.22 8.55 22.40 0.19 -6.03 16 6 C 0.17 6.47 6.07 38.21 0.23 6.70 16 7 N -0.92 -37.32 2.92 -343.13 -1.00 -38.32 16 8 C 0.21 9.15 2.22 85.63 0.19 9.34 16 9 C -0.54 -29.96 8.31 25.60 0.21 -29.74 16 10 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 11 C 0.02 0.94 5.47 84.65 0.46 1.41 16 12 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 13 Si 0.93 39.14 27.47 68.60 1.88 41.02 16 14 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.22 -7.88 6.54 99.48 0.65 -7.23 16 17 S 2.68 103.62 4.46 -56.49 -0.25 103.36 16 18 O -0.98 -41.21 14.78 -128.00 -1.89 -43.10 16 19 O -0.97 -42.63 14.38 -128.00 -1.84 -44.47 16 20 C -0.69 -18.67 5.32 22.23 0.12 -18.55 16 21 C 0.02 0.48 7.80 22.54 0.18 0.65 16 22 C -0.06 -0.99 5.73 -21.36 -0.12 -1.11 16 23 C 0.28 5.61 15.33 88.34 1.35 6.97 16 24 N -0.45 -10.99 18.54 19.00 0.35 -10.64 16 25 C 0.01 0.09 9.76 22.54 0.22 0.31 16 26 C -0.13 -1.52 9.65 22.23 0.21 -1.30 16 27 C 0.05 1.11 5.88 -19.81 -0.12 0.99 16 28 C -0.20 -4.67 7.86 71.23 0.56 -4.11 16 29 C -0.16 -6.19 8.69 22.40 0.19 -6.00 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.09 1.69 8.08 -2.39 -0.02 1.68 16 32 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.12 3.62 4.12 -2.91 -0.01 3.61 16 36 H 0.06 2.37 6.87 -2.39 -0.02 2.36 16 37 H 0.07 2.83 3.59 -2.39 -0.01 2.82 16 38 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 39 H 0.15 3.50 7.15 -2.91 -0.02 3.48 16 40 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 41 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.10 2.26 6.55 -2.38 -0.02 2.25 16 43 H 0.13 1.84 8.04 -2.39 -0.02 1.82 16 44 H 0.09 2.63 3.98 -2.38 -0.01 2.62 16 45 H 0.12 5.40 6.10 -2.91 -0.02 5.39 16 Total: -1.00 -78.53 378.86 3.47 -75.06 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.00 Total: 24.20 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 4.92 Total: -50.26 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -0.35 Total: -105.81 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -3.73 Total: -87.57 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.02 kcal Atomic # 16 Polarization: 103.62 SS G_CDS: -0.25 Total: 103.36 kcal Total: -78.53 3.47 -75.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071908108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.516 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds