Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99737 * 2 1 4 4 H 1.48509 * 109.46756 * 269.99326 * 3 2 1 5 5 H 1.48499 * 109.47269 * 29.99380 * 3 2 1 6 6 H 1.48497 * 109.47260 * 150.00020 * 3 2 1 7 7 C 1.37875 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00155 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00146 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47372 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00203 * 270.00120 * 10 9 7 12 12 O 1.21584 * 120.00002 * 6.46690 * 11 10 9 13 13 N 1.34780 * 120.00170 * 186.46875 * 11 10 9 14 14 C 1.39938 * 120.00004 * 187.71916 * 13 11 10 15 15 C 1.38946 * 120.03695 * 337.18717 * 14 13 11 16 16 C 1.38140 * 120.07372 * 179.97438 * 15 14 13 17 17 C 1.38171 * 120.14365 * 0.02562 * 16 15 14 18 18 C 1.38913 * 120.06799 * 0.02587 * 17 16 15 19 19 N 1.39861 * 120.03967 * 179.97438 * 18 17 16 20 20 C 1.34772 * 120.00154 * 211.68938 * 19 18 17 21 21 O 1.21632 * 120.00033 * 8.19316 * 20 19 18 22 22 C 1.47355 * 120.00564 * 188.18685 * 20 19 18 23 23 C 1.47022 * 127.20037 * 180.02562 * 22 20 19 24 24 C 1.34168 * 105.95595 * 179.97438 * 23 22 20 25 25 O 1.34216 * 109.13514 * 0.02562 * 24 23 22 26 26 C 1.33666 * 110.90362 * 359.75873 * 25 24 23 27 27 C 1.38715 * 120.03512 * 156.90977 * 14 13 11 28 28 C 1.46500 * 120.00124 * 89.99831 * 10 9 7 29 29 C 1.53004 * 117.51608 * 347.59816 * 28 10 9 30 30 C 1.52998 * 117.49687 * 56.22601 * 28 10 9 31 31 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47164 * 59.99732 * 9 7 2 33 33 H 1.08998 * 109.47526 * 300.00130 * 9 7 2 34 34 H 0.96994 * 119.99847 * 7.71979 * 13 11 10 35 35 H 1.08005 * 119.96092 * 359.95823 * 15 14 13 36 36 H 1.08005 * 119.92454 * 179.97438 * 16 15 14 37 37 H 1.07997 * 119.96825 * 179.97438 * 17 16 15 38 38 H 0.96998 * 120.00026 * 31.68914 * 19 18 17 39 39 H 1.07996 * 127.01682 * 359.97438 * 23 22 20 40 40 H 1.08004 * 125.43714 * 180.02562 * 24 23 22 41 41 H 1.07997 * 125.80225 * 180.24860 * 26 25 24 42 42 H 1.08004 * 120.06938 * 0.02786 * 27 14 13 43 43 H 1.09005 * 115.55222 * 201.90142 * 28 10 9 44 44 H 1.08996 * 117.50022 * 214.96945 * 29 28 10 45 45 H 1.08998 * 117.49713 * 359.97438 * 29 28 10 46 46 H 1.08992 * 117.50411 * 359.97438 * 30 28 10 47 47 H 1.09007 * 117.49926 * 144.97582 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0022 11 6 4.2241 -3.2097 1.1699 12 8 3.9111 -2.6809 2.2191 13 7 4.7952 -4.4305 1.1747 14 6 4.8814 -5.1580 2.3670 15 6 4.8357 -4.4985 3.5891 16 6 4.9201 -5.2160 4.7665 17 6 5.0508 -6.5911 4.7332 18 6 5.0982 -7.2564 3.5147 19 7 5.2311 -8.6483 3.4817 20 6 5.8900 -9.2385 2.4649 21 8 6.4956 -8.5598 1.6574 22 6 5.8768 -10.7059 2.3314 23 6 6.5365 -11.5098 1.2921 24 6 6.2487 -12.7889 1.5771 25 8 5.4844 -12.8328 2.6795 26 6 5.2539 -11.6028 3.1493 27 6 5.0068 -6.5390 2.3301 28 6 4.2445 -3.2666 -1.2659 29 6 3.7054 -2.6158 -2.5414 30 6 5.2084 -2.6082 -2.2550 31 1 -0.4851 0.8400 -0.0004 32 1 3.8745 -0.6799 0.8911 33 1 3.8752 -0.6803 -0.8888 34 1 5.1466 -4.8047 0.3517 35 1 4.7342 -3.4236 3.6184 36 1 4.8847 -4.7008 5.7151 37 1 5.1170 -7.1492 5.6554 38 1 4.8490 -9.1889 4.1907 39 1 7.1313 -11.1452 0.4677 40 1 6.5793 -13.6466 1.0099 41 1 4.6718 -11.3602 4.0260 42 1 5.0385 -7.0544 1.3815 43 1 4.2405 -4.3555 -1.2161 44 1 3.3468 -3.2765 -3.3307 45 1 3.1682 -1.6732 -2.4370 46 1 5.6601 -1.6604 -1.9625 47 1 5.8389 -3.2639 -2.8557 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071920245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = 41.103843 kcal Electronic energy + Delta-G solvation = -32182.821336 eV Core-core repulsion = 27720.783056 eV Total energy + Delta-G solvation = -4462.038281 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.01671 -40.73244 -39.99807 -38.32172 -37.01913 -35.24877 -34.06964 -33.30928 -33.22757 -32.10111 -30.70594 -29.88007 -28.97943 -27.62408 -24.63946 -23.23323 -22.57832 -22.50676 -21.99637 -21.94569 -21.44015 -20.42123 -19.10595 -18.94025 -18.08320 -17.56682 -16.89097 -16.63403 -16.61881 -16.20160 -15.73758 -15.31682 -15.20351 -15.06878 -14.75933 -14.47921 -14.03410 -13.99397 -13.91742 -13.65790 -13.37380 -13.33728 -12.91410 -12.80187 -12.57297 -12.01565 -11.89997 -11.74724 -11.48704 -11.31940 -11.02812 -10.77552 -10.70915 -10.50632 -10.33366 -10.26802 -10.21128 -10.01517 -9.91754 -9.47440 -9.32253 -9.08199 -8.58861 -8.26494 -7.87671 -7.49145 -6.07376 -4.05641 0.78066 1.44214 1.52236 1.72582 2.41856 2.69234 2.97828 3.06436 3.26296 3.36228 3.38427 3.54344 4.02084 4.08608 4.12949 4.17526 4.37783 4.39540 4.55864 4.98006 5.06997 5.13007 5.14803 5.18356 5.18848 5.23269 5.34478 5.38393 5.48638 5.53923 5.68108 5.72799 5.80658 5.89107 5.98472 6.21910 6.29671 6.32453 6.45049 6.45974 6.59619 6.63521 6.70843 6.79090 6.88922 7.12875 7.24725 7.33249 7.46642 7.61270 7.82354 8.41576 8.48605 8.97717 9.08974 9.52159 11.06016 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.002028 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.497420 B =13805.821832 C =14798.426120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.230 3.770 10 N -0.573 5.573 11 C 0.706 3.294 12 O -0.558 6.558 13 N -0.686 5.686 14 C 0.201 3.799 15 C -0.156 4.156 16 C -0.079 4.079 17 C -0.176 4.176 18 C 0.162 3.838 19 N -0.667 5.667 20 C 0.585 3.415 21 O -0.511 6.511 22 C -0.235 4.235 23 C -0.163 4.163 24 C -0.039 4.039 25 O -0.173 6.173 26 C 0.023 3.977 27 C -0.164 4.164 28 C 0.069 3.931 29 C -0.169 4.169 30 C -0.203 4.203 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.028 0.972 34 H 0.405 0.595 35 H 0.169 0.831 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.407 0.593 39 H 0.161 0.839 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.679 -24.460 4.431 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.109 3.891 10 N -0.306 5.306 11 C 0.409 3.591 12 O -0.435 6.435 13 N -0.333 5.333 14 C 0.103 3.897 15 C -0.176 4.176 16 C -0.098 4.098 17 C -0.197 4.197 18 C 0.068 3.932 19 N -0.312 5.312 20 C 0.374 3.626 21 O -0.387 6.387 22 C -0.240 4.240 23 C -0.183 4.183 24 C -0.105 4.105 25 O -0.068 6.068 26 C -0.047 4.047 27 C -0.187 4.187 28 C -0.037 4.037 29 C -0.207 4.207 30 C -0.242 4.242 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.241 0.759 35 H 0.186 0.814 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.242 0.758 39 H 0.179 0.821 40 H 0.227 0.773 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.555 -23.665 4.614 27.660 hybrid contribution 0.269 0.433 -0.310 0.597 sum 13.824 -23.232 4.304 27.374 Atomic orbital electron populations 1.69887 1.06146 1.26902 1.50497 1.24832 0.94737 0.98750 0.94646 0.86936 0.80684 0.84141 0.78525 1.20103 1.20896 1.18871 1.21283 0.88946 0.94826 1.50982 0.90624 1.19628 0.95886 0.76149 0.97388 1.46746 1.66388 1.15757 1.01663 1.15767 0.78574 0.80088 0.84689 1.90750 1.57265 1.65957 1.29482 1.42864 1.61950 1.18294 1.10160 1.17434 0.96781 0.89491 0.85996 1.22146 1.01535 1.03849 0.90103 1.20883 0.97822 0.92820 0.98303 1.20715 1.08521 0.94984 0.95529 1.17182 1.00717 0.81603 0.93726 1.43236 1.55929 1.05859 1.26187 1.17339 0.78159 0.86072 0.81016 1.90830 1.41333 1.64740 1.41764 1.21470 1.08086 0.93554 1.00883 1.22809 1.03161 0.91605 1.00680 1.23999 0.97792 0.99387 0.89288 1.83813 1.55430 1.30615 1.36935 1.24485 0.99927 0.81111 0.99204 1.20563 1.07980 0.91940 0.98257 1.21465 1.04719 0.94913 0.82609 1.23342 0.95506 1.04580 0.97225 1.23443 0.93586 1.03405 1.03738 0.92586 0.94025 0.95390 0.75921 0.81393 0.85474 0.86167 0.75758 0.82090 0.77286 0.77142 0.84978 0.86756 0.88617 0.86277 0.88677 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.80 9.54 -34.44 -0.33 -15.13 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.23 5.55 3.45 -5.20 -0.02 5.53 16 10 N -0.57 -11.96 2.80 -173.17 -0.49 -12.44 16 11 C 0.71 14.96 8.17 -86.91 -0.71 14.25 16 12 O -0.56 -13.68 12.73 5.29 0.07 -13.61 16 13 N -0.69 -11.75 5.20 -14.24 -0.07 -11.82 16 14 C 0.20 3.37 6.49 -83.72 -0.54 2.82 16 15 C -0.16 -2.63 8.88 -39.35 -0.35 -2.98 16 16 C -0.08 -1.06 10.03 -39.64 -0.40 -1.46 16 17 C -0.18 -2.05 9.95 -39.36 -0.39 -2.44 16 18 C 0.16 2.05 6.29 -83.74 -0.53 1.52 16 19 N -0.67 -6.35 5.32 -10.87 -0.06 -6.40 16 20 C 0.59 6.61 7.51 -12.55 -0.09 6.51 16 21 O -0.51 -7.72 14.71 5.25 0.08 -7.64 16 22 C -0.24 -2.03 6.31 -103.28 -0.65 -2.68 16 23 C -0.16 -1.27 11.01 -37.46 -0.41 -1.68 16 24 C -0.04 -0.21 12.03 29.30 0.35 0.14 16 25 O -0.17 -1.08 10.52 7.61 0.08 -1.00 16 26 C 0.02 0.13 11.62 30.08 0.35 0.48 16 27 C -0.16 -2.45 8.54 -39.20 -0.33 -2.79 16 28 C 0.07 1.13 5.92 -67.93 -0.40 0.73 16 29 C -0.17 -2.70 9.72 -26.73 -0.26 -2.96 16 30 C -0.20 -2.83 10.04 -26.73 -0.27 -3.10 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.04 1.08 6.58 -51.93 -0.34 0.74 16 33 H 0.03 0.64 5.69 -51.93 -0.30 0.34 16 34 H 0.40 5.81 6.77 -40.82 -0.28 5.54 16 35 H 0.17 3.28 5.21 -52.63 -0.27 3.00 16 36 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.41 2.20 7.82 -40.82 -0.32 1.88 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.21 0.35 8.06 -52.48 -0.42 -0.07 16 41 H 0.21 0.28 7.50 -52.49 -0.39 -0.11 16 42 H 0.13 2.00 6.41 -52.48 -0.34 1.67 16 43 H 0.11 1.59 6.78 -51.93 -0.35 1.24 16 44 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.12 2.28 6.29 -51.93 -0.33 1.95 16 46 H 0.09 1.41 7.90 -51.93 -0.41 1.00 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -37.69 396.26 -8.85 -46.55 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.45 Total: 11.73 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -5.08 Total: -1.22 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.16 Total: -57.39 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.22 Total: -22.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.69 -8.85 -46.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071920245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.651 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds