Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47151 * 2 1 4 4 C 1.33638 * 122.75083 * 85.02360 * 3 2 1 5 5 S 1.76194 * 107.92924 * 179.97438 * 4 3 2 6 6 C 1.70978 * 90.28161 * 0.02562 * 5 4 3 7 7 C 1.50704 * 124.91566 * 180.26605 * 6 5 4 8 8 H 1.09007 * 109.49584 * 179.69404 * 7 6 5 9 9 C 1.53039 * 109.49896 * 299.76024 * 7 6 5 10 10 C 1.53036 * 109.53838 * 181.32076 * 9 7 6 11 11 C 1.53190 * 109.30977 * 298.63159 * 10 9 7 12 12 N 1.46931 * 108.77632 * 54.63788 * 11 10 9 13 13 C 1.34775 * 120.62808 * 126.39060 * 12 11 10 14 14 O 1.21545 * 120.00386 * 353.93678 * 13 12 11 15 15 C 1.47888 * 119.99398 * 173.94240 * 13 12 11 16 16 C 1.39917 * 120.02954 * 325.22635 * 15 13 12 17 17 C 1.38324 * 120.36206 * 179.71990 * 16 15 13 18 18 C 1.37759 * 120.41135 * 0.55646 * 17 16 15 19 19 C 1.40749 * 120.03710 * 359.72228 * 18 17 16 20 20 C 1.41441 * 120.17969 * 180.02562 * 19 18 17 21 21 H 1.07992 * 119.99995 * 151.46609 * 20 19 18 22 22 C 1.39937 * 119.99429 * 331.47451 * 20 19 18 23 23 N 1.30832 * 119.99527 * 161.58179 * 22 20 19 24 24 Si 1.86798 * 120.00223 * 341.57566 * 22 20 19 25 25 H 1.48497 * 109.47320 * 94.66600 * 24 22 20 26 26 H 1.48507 * 109.47018 * 214.66145 * 24 22 20 27 27 H 1.48500 * 109.47224 * 334.65844 * 24 22 20 28 28 C 1.38998 * 120.02087 * 145.50193 * 15 13 12 29 29 C 1.46931 * 118.76348 * 306.41258 * 12 11 10 30 30 N 1.29025 * 110.16915 * 0.02562 * 6 5 4 31 31 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46696 * 299.99890 * 1 2 3 33 33 H 1.09006 * 109.47054 * 59.99490 * 1 2 3 34 34 H 1.09000 * 109.46696 * 240.00110 * 2 1 3 35 35 H 1.08998 * 109.47343 * 120.00373 * 2 1 3 36 36 H 1.08006 * 126.03602 * 359.96463 * 4 3 2 37 37 H 1.09008 * 109.45902 * 301.33502 * 9 7 6 38 38 H 1.08996 * 109.46106 * 61.30351 * 9 7 6 39 39 H 1.09000 * 109.50321 * 58.58521 * 10 9 7 40 40 H 1.08994 * 109.49763 * 178.65160 * 10 9 7 41 41 H 1.09004 * 109.58697 * 174.42430 * 11 10 9 42 42 H 1.09000 * 109.58875 * 294.70508 * 11 10 9 43 43 H 1.08004 * 119.81643 * 359.97390 * 16 15 13 44 44 H 1.08000 * 119.80044 * 180.25339 * 17 16 15 45 45 H 1.08000 * 119.98029 * 179.69923 * 18 17 16 46 46 H 0.97004 * 119.99725 * 179.97438 * 23 22 20 47 47 H 1.07998 * 120.20463 * 359.97438 * 28 15 13 48 48 H 1.09005 * 109.55789 * 293.78422 * 29 12 11 49 49 H 1.08996 * 109.61517 * 173.36112 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1814 2.1349 1.1197 5 16 2.7868 3.7275 0.6707 6 6 2.7785 3.2751 -0.9781 7 6 3.2044 4.1636 -2.1184 8 1 3.1036 3.6218 -3.0590 9 6 2.3201 5.4122 -2.1509 10 6 2.7302 6.2994 -3.3285 11 6 4.1854 6.7421 -3.1464 12 7 5.0242 5.5489 -2.9691 13 6 6.1025 5.3451 -3.7514 14 8 6.3270 6.0921 -4.6836 15 6 7.0126 4.2125 -3.4757 16 6 7.2548 3.8140 -2.1565 17 6 8.1002 2.7518 -1.8910 18 6 8.7223 2.0814 -2.9211 19 6 8.4954 2.4716 -4.2543 20 6 9.1322 1.7849 -5.3143 21 1 8.6620 1.7354 -6.2852 22 6 10.3715 1.1697 -5.1048 23 7 10.7937 0.2501 -5.9341 24 14 11.4228 1.6613 -3.6411 25 1 11.1623 0.7342 -2.5107 26 1 12.8579 1.5924 -4.0170 27 1 11.0843 3.0482 -3.2320 28 6 7.6324 3.5466 -4.5266 29 6 4.6652 4.5814 -1.9231 30 7 2.3598 2.0612 -1.1043 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.9683 1.7957 2.1227 37 1 1.2774 5.1158 -2.2655 38 1 2.4398 5.9663 -1.2200 39 1 2.6344 5.7379 -4.2578 40 1 2.0845 7.1766 -3.3653 41 1 4.5134 7.2914 -4.0290 42 1 4.2655 7.3816 -2.2674 43 1 6.7758 4.3360 -1.3413 44 1 8.2775 2.4493 -0.8695 45 1 9.3848 1.2561 -2.7056 46 1 11.6530 -0.1761 -5.7891 47 1 7.4516 3.8533 -5.5462 48 1 4.7854 5.0425 -0.9427 49 1 5.3091 3.7053 -1.9985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072282131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = 23.131575 kcal Electronic energy + Delta-G solvation = -30953.854449 eV Core-core repulsion = 26971.904136 eV Total energy + Delta-G solvation = -3981.950313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.47636 -39.85396 -37.82007 -37.06398 -34.19874 -33.84515 -32.87566 -31.95620 -30.45866 -29.98197 -29.03175 -25.85791 -25.64113 -25.29463 -23.96930 -22.92067 -21.76967 -20.83782 -20.68582 -19.88501 -18.96165 -17.85499 -17.57702 -16.33641 -16.09286 -15.76917 -15.57438 -15.09666 -14.97425 -14.63187 -14.50283 -14.35853 -14.28141 -14.00989 -13.59931 -13.49434 -13.23599 -12.95570 -12.85442 -12.77018 -12.55286 -12.39787 -12.20485 -12.03190 -11.73004 -11.52345 -11.46302 -11.19960 -11.10320 -11.03662 -10.98291 -10.84842 -10.72728 -10.53167 -9.98121 -9.75597 -9.74675 -9.55293 -9.47618 -9.09373 -8.87128 -8.51194 -7.88485 -7.73396 -7.03422 -4.57084 0.54370 1.20640 1.59593 1.97256 2.48644 2.62570 3.04384 3.10659 3.17222 3.25348 3.46028 3.81628 3.91746 4.38953 4.50136 4.59440 4.67342 4.78821 4.85292 4.93314 5.05578 5.08399 5.13566 5.17905 5.27701 5.29954 5.32314 5.38059 5.48789 5.62422 5.63634 5.67369 5.82549 5.85275 5.86693 5.87897 5.88891 5.94785 6.04760 6.07256 6.12763 6.35140 6.60539 6.64149 6.71945 6.96300 7.20011 7.36367 7.48276 7.60404 7.64933 7.73216 7.93457 8.25304 8.50578 8.57659 8.69047 9.98471 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.008965 B = 0.003001 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.447119 B = 9328.771801 C =11259.891214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C 0.075 3.925 4 C -0.266 4.266 5 S 0.117 5.883 6 C 0.070 3.930 7 C -0.031 4.031 8 H 0.108 0.892 9 C -0.111 4.111 10 C -0.131 4.131 11 C 0.108 3.892 12 N -0.611 5.611 13 C 0.570 3.430 14 O -0.542 6.542 15 C -0.103 4.103 16 C -0.227 4.227 17 C -0.080 4.080 18 C -0.226 4.226 19 C 0.085 3.915 20 C -0.440 4.440 21 H 0.093 0.907 22 C 0.083 3.917 23 N -0.801 5.801 24 Si 0.912 3.088 25 H -0.269 1.269 26 H -0.290 1.290 27 H -0.243 1.243 28 C -0.142 4.142 29 C 0.102 3.898 30 N -0.465 5.465 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.287 0.713 47 H 0.111 0.889 48 H 0.066 0.934 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.100 4.990 15.054 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.057 4.057 4 C -0.405 4.405 5 S 0.372 5.628 6 C -0.209 4.209 7 C -0.054 4.054 8 H 0.126 0.874 9 C -0.150 4.150 10 C -0.170 4.170 11 C -0.014 4.014 12 N -0.345 5.345 13 C 0.362 3.638 14 O -0.420 6.420 15 C -0.106 4.106 16 C -0.247 4.247 17 C -0.098 4.098 18 C -0.245 4.245 19 C 0.082 3.918 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.136 4.136 23 N -0.425 5.425 24 Si 0.738 3.262 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.166 1.166 28 C -0.162 4.162 29 C -0.022 4.022 30 N -0.179 5.179 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.192 0.808 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.097 0.903 47 H 0.129 0.871 48 H 0.084 0.916 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.546 5.899 14.414 23.461 hybrid contribution 0.195 -0.934 0.772 1.227 sum -17.351 4.965 15.186 23.587 Atomic orbital electron populations 1.21725 0.94359 1.01984 1.02135 1.20150 0.96043 0.89286 1.03714 1.20283 1.00412 0.98453 0.86575 1.26783 1.12511 0.97272 1.03971 1.83898 1.60587 1.14525 1.03754 1.26838 1.01789 0.94511 0.97728 1.20312 0.95987 0.93906 0.95230 0.87412 1.21649 0.99205 0.94740 0.99381 1.21896 0.96347 0.99998 0.98728 1.21573 0.89513 0.87431 1.02887 1.47874 1.27751 1.23010 1.35864 1.18903 0.79957 0.84664 0.80297 1.90701 1.73712 1.48069 1.29488 1.19353 0.99511 0.96685 0.95013 1.20540 1.07354 1.02723 0.94094 1.20507 0.96392 0.95482 0.97402 1.21157 1.06556 1.03442 0.93370 1.17666 0.91607 0.90098 0.92396 1.19533 1.02899 1.25717 0.98597 0.88858 1.26183 0.98536 0.91682 0.97233 1.69694 1.20021 1.17062 1.35700 0.86308 0.77291 0.82154 0.80410 1.19547 1.21706 1.16607 1.21153 1.01381 0.96666 0.96992 1.22385 0.94110 0.95150 0.90531 1.66131 1.13867 1.06382 1.31500 0.91945 0.92748 0.92391 0.89780 0.90221 0.80813 0.91149 0.91386 0.90964 0.90309 0.88702 0.91704 0.87822 0.88324 0.87905 0.90256 0.87101 0.91596 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.47 6.35 -27.88 -0.18 -0.65 16 3 C 0.07 0.85 5.99 -84.23 -0.50 0.35 16 4 C -0.27 -2.57 11.14 29.12 0.32 -2.25 16 5 S 0.12 1.14 22.45 -107.50 -2.41 -1.28 16 6 C 0.07 0.85 6.04 -13.46 -0.08 0.77 16 7 C -0.03 -0.37 2.77 -91.65 -0.25 -0.63 16 8 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 9 C -0.11 -1.04 5.05 -26.69 -0.13 -1.18 16 10 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 11 C 0.11 1.30 6.44 -3.71 -0.02 1.28 16 12 N -0.61 -9.24 2.97 -173.86 -0.52 -9.75 16 13 C 0.57 11.22 7.39 -12.31 -0.09 11.12 16 14 O -0.54 -12.13 16.22 5.33 0.09 -12.04 16 15 C -0.10 -2.19 5.30 -105.04 -0.56 -2.75 16 16 C -0.23 -4.43 7.36 -38.92 -0.29 -4.72 16 17 C -0.08 -1.63 10.01 -39.73 -0.40 -2.03 16 18 C -0.23 -5.27 7.18 -38.81 -0.28 -5.55 16 19 C 0.09 2.15 5.13 -106.87 -0.55 1.60 16 20 C -0.44 -11.79 9.57 -37.73 -0.36 -12.15 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 22 C 0.08 2.16 5.41 -17.34 -0.09 2.07 16 23 N -0.80 -21.08 13.93 55.55 0.77 -20.30 16 24 Si 0.91 20.48 24.49 -169.99 -4.16 16.32 16 25 H -0.27 -5.80 6.65 56.52 0.38 -5.42 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.24 -5.62 6.87 56.52 0.39 -5.23 16 28 C -0.14 -3.39 9.35 -38.44 -0.36 -3.75 16 29 C 0.10 1.36 3.98 -3.71 -0.01 1.35 16 30 N -0.47 -6.30 10.53 -8.06 -0.08 -6.38 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.07 0.56 7.98 -51.93 -0.41 0.15 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.72 5.98 -52.48 -0.31 1.40 16 44 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 45 H 0.10 2.39 4.53 -52.49 -0.24 2.15 16 46 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 47 H 0.11 2.68 7.99 -52.49 -0.42 2.27 16 48 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 49 H 0.12 1.94 4.45 -51.93 -0.23 1.71 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -29.95 401.10 -10.95 -40.91 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.05 Total: 5.75 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.63 Total: -19.26 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.17 Total: -36.44 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.16 Total: 16.32 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.41 Total: -1.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.95 -10.95 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072282131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.038 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds