Wall clock time and date at job start Tue Mar 31 2020 06:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31787 * 122.74547 * 2 1 4 4 C 1.29029 * 117.12198 * 180.22393 * 3 2 1 5 5 C 1.50697 * 124.91408 * 179.81415 * 4 3 2 6 6 H 1.09003 * 109.52096 * 179.61612 * 5 4 3 7 7 C 1.53040 * 109.49606 * 59.53747 * 5 4 3 8 8 C 1.53045 * 109.53514 * 178.67997 * 7 5 4 9 9 C 1.53193 * 109.31103 * 61.36255 * 8 7 5 10 10 N 1.46926 * 108.78141 * 305.36520 * 9 8 7 11 11 C 1.34768 * 120.63337 * 233.63444 * 10 9 8 12 12 O 1.21550 * 120.00247 * 173.91259 * 11 10 9 13 13 C 1.47889 * 120.00083 * 353.91114 * 11 10 9 14 14 C 1.39917 * 120.02267 * 325.17627 * 13 11 10 15 15 C 1.38336 * 120.35693 * 179.71227 * 14 13 11 16 16 C 1.37750 * 120.41009 * 0.56400 * 15 14 13 17 17 C 1.40747 * 120.04021 * 359.71513 * 16 15 14 18 18 C 1.41437 * 120.17891 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00395 * 151.48852 * 18 17 16 20 20 C 1.39943 * 119.99804 * 331.48769 * 18 17 16 21 21 N 1.30823 * 119.99590 * 161.56222 * 20 18 17 22 22 Si 1.86797 * 120.00175 * 341.56155 * 20 18 17 23 23 H 1.48502 * 109.47041 * 94.66488 * 22 20 18 24 24 H 1.48493 * 109.47340 * 214.66441 * 22 20 18 25 25 H 1.48505 * 109.47168 * 334.66973 * 22 20 18 26 26 C 1.38999 * 120.02711 * 145.44841 * 13 11 10 27 27 C 1.46928 * 118.73661 * 53.60272 * 10 9 8 28 28 S 1.70979 * 110.16551 * 359.54981 * 4 3 2 29 29 C 1.33631 * 122.74930 * 179.73324 * 2 1 3 30 30 C 1.50697 * 126.04282 * 359.96545 * 29 2 1 31 31 H 1.09000 * 109.47251 * 270.26347 * 1 2 3 32 32 H 1.09005 * 109.47458 * 30.26752 * 1 2 3 33 33 H 1.09000 * 109.47256 * 150.26530 * 1 2 3 34 34 H 1.08994 * 109.46201 * 58.66305 * 7 5 4 35 35 H 1.08991 * 109.44887 * 298.68800 * 7 5 4 36 36 H 1.09001 * 109.50008 * 301.41412 * 8 7 5 37 37 H 1.09000 * 109.52477 * 181.33229 * 8 7 5 38 38 H 1.08999 * 109.58744 * 185.57391 * 9 8 7 39 39 H 1.09002 * 109.70076 * 65.22308 * 9 8 7 40 40 H 1.08004 * 119.82392 * 359.97438 * 14 13 11 41 41 H 1.08005 * 119.79092 * 180.25548 * 15 14 13 42 42 H 1.08000 * 119.97751 * 179.69661 * 16 15 14 43 43 H 0.97008 * 119.99441 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.19849 * 359.97438 * 26 13 11 45 45 H 1.09003 * 109.58243 * 66.18058 * 27 10 9 46 46 H 1.08995 * 109.58952 * 186.60921 * 27 10 9 47 47 H 1.09000 * 109.47488 * 180.02562 * 30 29 2 48 48 H 1.09004 * 109.46898 * 300.01999 * 30 29 2 49 49 H 1.09001 * 109.46913 * 60.01337 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1084 0.0000 4 6 3.5039 0.9820 -0.0045 5 6 4.4834 2.1273 -0.0093 6 1 5.5009 1.7364 -0.0056 7 6 4.2640 2.9922 1.2341 8 6 5.2798 4.1368 1.2470 9 6 5.0730 5.0117 0.0066 10 7 5.1384 4.1604 -1.1891 11 6 5.9817 4.4567 -2.1977 12 8 6.1078 3.6874 -3.1303 13 6 6.7536 5.7178 -2.1699 14 6 6.1870 6.8734 -1.6211 15 6 6.9051 8.0553 -1.5861 16 6 8.1813 8.1114 -2.1014 17 6 8.7657 6.9605 -2.6628 18 6 10.0761 7.0146 -3.1923 19 1 10.6943 6.1291 -3.1953 20 6 10.5716 8.2156 -3.7122 21 7 11.8604 8.3794 -3.8659 22 14 9.3929 9.5848 -4.1869 23 1 9.2560 10.5351 -3.0539 24 1 9.9210 10.3032 -5.3744 25 1 8.0645 9.0047 -4.5095 26 6 8.0404 5.7574 -2.6941 27 6 4.2675 2.9794 -1.2639 28 16 3.9333 -0.6730 0.0032 29 6 2.2299 -1.1239 0.0052 30 6 1.6847 -2.5288 0.0125 31 1 -0.3634 0.0047 1.0276 32 1 -0.3634 0.8876 -0.5180 33 1 -0.3634 -0.8923 -0.5097 34 1 4.3929 2.3822 2.1281 35 1 3.2545 3.4028 1.2170 36 1 6.2898 3.7270 1.2388 37 1 5.1388 4.7389 2.1446 38 1 5.8553 5.7692 -0.0409 39 1 4.0979 5.4963 0.0572 40 1 5.1853 6.8415 -1.2187 41 1 6.4603 8.9409 -1.1566 42 1 8.7338 9.0390 -2.0749 43 1 12.2040 9.2121 -4.2259 44 1 8.4801 4.8689 -3.1223 45 1 3.2259 3.2963 -1.3155 46 1 4.5185 2.3958 -2.1496 47 1 2.5113 -3.2393 0.0161 48 1 1.0744 -2.6770 0.9034 49 1 1.0740 -2.6861 -0.8765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072297368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:42 Heat of formation + Delta-G solvation = 20.898452 kcal Electronic energy + Delta-G solvation = -30380.573955 eV Core-core repulsion = 26398.526806 eV Total energy + Delta-G solvation = -3982.047149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.54610 -39.84500 -37.78760 -36.98039 -34.37381 -33.67064 -32.51847 -31.49385 -30.53510 -30.06680 -29.75436 -26.05748 -25.63511 -25.26647 -24.72901 -22.56463 -22.36842 -20.83688 -20.72456 -19.33636 -18.51764 -18.20808 -17.55770 -16.31334 -16.03124 -15.65517 -15.52322 -15.24248 -14.93202 -14.59623 -14.46095 -14.16847 -13.95462 -13.65507 -13.51260 -13.37838 -13.26909 -13.25033 -12.91232 -12.79636 -12.72850 -12.58139 -12.49496 -12.34162 -12.03293 -11.72050 -11.48221 -11.31869 -11.08940 -11.04142 -10.93976 -10.76244 -10.68307 -10.51777 -9.96743 -9.80263 -9.72975 -9.46481 -9.43477 -9.06103 -8.85848 -8.43030 -7.87929 -7.72641 -7.03405 -4.57044 0.44775 1.08584 1.50511 1.98662 2.48968 2.52107 3.04420 3.16350 3.20168 3.25854 3.48157 3.82141 3.91834 4.40166 4.50055 4.60495 4.62908 4.69724 4.73362 4.98515 5.06694 5.08426 5.14220 5.15603 5.20982 5.29201 5.32853 5.40464 5.45932 5.49034 5.53880 5.64195 5.77010 5.81756 5.85623 5.89340 5.93726 6.00145 6.05074 6.09416 6.24240 6.36058 6.62370 6.66315 6.73773 6.96820 7.20675 7.38085 7.49163 7.53892 7.66939 7.73349 7.94631 8.25248 8.50856 8.61265 8.69242 9.98451 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.001942 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.148145 B =14417.263109 C =14809.716970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.061 3.939 3 N -0.463 5.463 4 C 0.063 3.937 5 C -0.023 4.023 6 H 0.093 0.907 7 C -0.103 4.103 8 C -0.135 4.135 9 C 0.090 3.910 10 N -0.612 5.612 11 C 0.568 3.432 12 O -0.546 6.546 13 C -0.100 4.100 14 C -0.226 4.226 15 C -0.081 4.081 16 C -0.226 4.226 17 C 0.084 3.916 18 C -0.440 4.440 19 H 0.093 0.907 20 C 0.083 3.917 21 N -0.802 5.802 22 Si 0.912 3.088 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.243 1.243 26 C -0.143 4.143 27 C 0.129 3.871 28 S 0.119 5.881 29 C -0.234 4.234 30 C -0.071 4.071 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.287 0.713 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 -14.318 11.643 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 N -0.177 5.177 4 C -0.216 4.216 5 C -0.046 4.046 6 H 0.111 0.889 7 C -0.142 4.142 8 C -0.174 4.174 9 C -0.032 4.032 10 N -0.345 5.345 11 C 0.360 3.640 12 O -0.423 6.423 13 C -0.103 4.103 14 C -0.245 4.245 15 C -0.099 4.099 16 C -0.246 4.246 17 C 0.081 3.919 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.137 4.137 21 N -0.425 5.425 22 Si 0.739 3.261 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.166 1.166 26 C -0.163 4.163 27 C 0.004 3.996 28 S 0.377 5.623 29 C -0.355 4.355 30 C -0.130 4.130 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.679 -14.659 11.043 25.483 hybrid contribution -1.175 0.659 -0.153 1.355 sum -18.854 -14.000 10.891 25.886 Atomic orbital electron populations 1.20331 0.87221 1.03276 1.02736 1.20161 0.98102 0.86232 1.02587 1.66060 1.04331 1.31405 1.15886 1.26743 0.93999 0.97577 1.03257 1.20261 0.95496 0.90897 0.97988 0.88854 1.21524 1.00601 0.96456 0.95634 1.21978 0.99720 0.97149 0.98531 1.22381 1.03785 0.93876 0.83200 1.47929 1.40655 1.26745 1.19203 1.18933 0.77792 0.86289 0.81030 1.90702 1.65625 1.50956 1.35066 1.19344 0.95731 0.91953 1.03318 1.20588 1.00137 0.93155 1.10658 1.20526 0.94499 0.96193 0.98696 1.21161 0.97175 0.98962 1.07274 1.17668 0.92657 0.90942 0.90600 1.19524 0.96506 0.97492 1.33299 0.88905 1.26183 0.95508 0.99174 0.92798 1.69691 1.13864 1.26831 1.32123 0.86302 0.82228 0.79799 0.77797 1.19539 1.21724 1.16649 1.21147 0.92908 0.98881 1.03379 1.21411 0.94535 0.86734 0.96885 1.84081 1.06752 1.03046 1.68400 1.25695 0.95177 1.00976 1.13672 1.20187 1.00894 0.88998 1.02925 0.90786 0.90583 0.90865 0.91779 0.90617 0.91153 0.90200 0.86265 0.91656 0.87548 0.88239 0.87912 0.90269 0.87169 0.90698 0.89033 0.91314 0.90491 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.06 36.01 0.36 -0.19 16 2 C 0.06 0.63 6.74 -84.23 -0.57 0.06 16 3 N -0.46 -5.61 10.50 -8.06 -0.08 -5.69 16 4 C 0.06 0.73 5.91 -13.46 -0.08 0.65 16 5 C -0.02 -0.27 2.77 -91.65 -0.25 -0.53 16 6 H 0.09 1.11 8.13 -51.93 -0.42 0.68 16 7 C -0.10 -1.05 5.14 -26.69 -0.14 -1.19 16 8 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 9 C 0.09 1.15 4.76 -3.71 -0.02 1.13 16 10 N -0.61 -9.55 2.97 -173.87 -0.52 -10.07 16 11 C 0.57 11.33 7.38 -12.31 -0.09 11.23 16 12 O -0.55 -12.50 16.22 5.32 0.09 -12.41 16 13 C -0.10 -2.12 5.30 -105.04 -0.56 -2.68 16 14 C -0.23 -4.30 7.36 -38.92 -0.29 -4.59 16 15 C -0.08 -1.61 10.01 -39.72 -0.40 -2.01 16 16 C -0.23 -5.18 7.18 -38.81 -0.28 -5.46 16 17 C 0.08 2.09 5.13 -106.87 -0.55 1.55 16 18 C -0.44 -11.70 9.57 -37.73 -0.36 -12.06 16 19 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.13 5.41 -17.34 -0.09 2.04 16 21 N -0.80 -20.92 13.93 55.55 0.77 -20.14 16 22 Si 0.91 20.36 24.49 -169.99 -4.16 16.19 16 23 H -0.27 -5.74 6.65 56.52 0.38 -5.36 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.24 -5.62 6.87 56.52 0.39 -5.23 16 26 C -0.14 -3.39 9.35 -38.44 -0.36 -3.75 16 27 C 0.13 1.81 5.71 -3.71 -0.02 1.79 16 28 S 0.12 1.20 23.17 -107.50 -2.49 -1.29 16 29 C -0.23 -2.17 6.59 -35.92 -0.24 -2.41 16 30 C -0.07 -0.42 9.56 36.00 0.34 -0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.40 7.46 -51.93 -0.39 0.01 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.12 1.69 4.45 -51.93 -0.23 1.46 16 39 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 40 H 0.11 1.72 5.98 -52.48 -0.31 1.40 16 41 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 42 H 0.10 2.34 4.53 -52.49 -0.24 2.10 16 43 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.11 2.66 7.99 -52.49 -0.42 2.24 16 45 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 46 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.38 8.00 -51.93 -0.42 -0.03 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -29.78 401.16 -11.12 -40.90 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.03 Total: 4.53 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -3.74 Total: -18.07 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.17 Total: -35.90 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.16 Total: 16.19 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.78 -11.12 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072297368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.800 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds