Wall clock time and date at job start Tue Mar 31 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31777 * 122.74801 * 2 1 4 4 C 1.29019 * 117.12367 * 179.97438 * 3 2 1 5 5 C 1.50700 * 124.91667 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.50077 * 359.97438 * 5 4 3 7 7 C 1.53040 * 109.49955 * 120.06450 * 5 4 3 8 8 C 1.53042 * 109.53954 * 181.34828 * 7 5 4 9 9 C 1.53190 * 109.31297 * 298.63079 * 8 7 5 10 10 N 1.46926 * 108.77275 * 54.63934 * 9 8 7 11 11 C 1.34769 * 120.63374 * 126.41255 * 10 9 8 12 12 O 1.21551 * 120.00252 * 354.47919 * 11 10 9 13 13 C 1.47890 * 120.00265 * 174.47332 * 11 10 9 14 14 C 1.39924 * 120.02340 * 147.00351 * 13 11 10 15 15 C 1.38327 * 120.35612 * 180.02562 * 14 13 11 16 16 C 1.37751 * 120.41165 * 359.97438 * 15 14 13 17 17 C 1.40749 * 120.04361 * 359.97438 * 16 15 14 18 18 C 1.41438 * 120.18023 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99874 * 152.71599 * 18 17 16 20 20 C 1.39938 * 119.99938 * 332.71373 * 18 17 16 21 21 N 1.30827 * 120.00094 * 163.41138 * 20 18 17 22 22 Si 1.86801 * 119.99897 * 343.40494 * 20 18 17 23 23 H 1.48504 * 109.46943 * 95.42644 * 22 20 18 24 24 H 1.48501 * 109.47351 * 215.42369 * 22 20 18 25 25 H 1.48501 * 109.47594 * 335.42741 * 22 20 18 26 26 C 1.38989 * 120.02356 * 326.73402 * 13 11 10 27 27 C 1.46930 * 118.73778 * 306.38375 * 10 9 8 28 28 S 1.70978 * 110.16941 * 0.22313 * 4 3 2 29 29 C 1.33641 * 122.74709 * 179.97438 * 2 1 3 30 30 C 1.50695 * 126.04048 * 0.02562 * 29 2 1 31 31 H 1.09000 * 109.47389 * 90.02977 * 1 2 3 32 32 H 1.08998 * 109.47274 * 210.02708 * 1 2 3 33 33 H 1.09002 * 109.47157 * 330.02467 * 1 2 3 34 34 H 1.08996 * 109.45822 * 301.36937 * 7 5 4 35 35 H 1.09001 * 109.46073 * 61.32371 * 7 5 4 36 36 H 1.08995 * 109.49388 * 58.58593 * 8 7 5 37 37 H 1.09001 * 109.49485 * 178.68050 * 8 7 5 38 38 H 1.08997 * 109.58569 * 174.42263 * 9 8 7 39 39 H 1.08994 * 109.58729 * 294.84990 * 9 8 7 40 40 H 1.07998 * 119.81828 * 0.02562 * 14 13 11 41 41 H 1.07998 * 119.79376 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.97704 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00024 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.20630 * 0.02562 * 26 13 11 45 45 H 1.08998 * 109.58953 * 293.82762 * 27 10 9 46 46 H 1.08996 * 109.58456 * 173.39693 * 27 10 9 47 47 H 1.09002 * 109.47689 * 89.99337 * 30 29 2 48 48 H 1.09005 * 109.46958 * 209.99818 * 30 29 2 49 49 H 1.09005 * 109.46990 * 329.99483 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 0.0005 5 6 4.4834 2.1271 0.0001 6 1 3.9391 3.0714 -0.0012 7 6 5.3642 2.0464 1.2489 8 6 6.3369 3.2279 1.2665 9 6 7.2411 3.1581 0.0319 10 7 6.3973 3.0890 -1.1689 11 6 6.5657 3.9663 -2.1780 12 8 7.3518 4.8858 -2.0591 13 6 5.7942 3.8104 -3.4300 14 6 5.4017 4.9404 -4.1559 15 6 4.6795 4.8025 -5.3276 16 6 4.3388 3.5518 -5.7936 17 6 4.7258 2.4035 -5.0777 18 6 4.3780 1.1179 -5.5539 19 1 4.9940 0.2658 -5.3072 20 6 3.2357 0.9500 -6.3446 21 7 3.0819 -0.1421 -7.0482 22 14 1.9304 2.2853 -6.3952 23 1 2.1684 3.1660 -7.5670 24 1 0.5878 1.6611 -6.5099 25 1 1.9971 3.0905 -5.1492 26 6 5.4634 2.5410 -3.8895 27 6 5.3667 2.0449 -1.2490 28 16 3.9333 -0.6731 -0.0052 29 6 2.2299 -1.1240 0.0005 30 6 1.6847 -2.5289 0.0006 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 4.7361 2.0799 2.1391 35 1 5.9269 1.1129 1.2368 36 1 5.7750 4.1618 1.2537 37 1 6.9479 3.1826 2.1680 38 1 7.8679 4.0487 -0.0127 39 1 7.8692 2.2692 0.0888 40 1 5.6641 5.9255 -3.7994 41 1 4.3808 5.6809 -5.8804 42 1 3.7751 3.4523 -6.7095 43 1 2.2899 -0.2587 -7.5960 44 1 5.7677 1.6659 -3.3346 45 1 5.8420 1.0651 -1.2966 46 1 4.7567 2.2010 -2.1387 47 1 1.5535 -2.8678 -1.0270 48 1 2.3828 -3.1895 0.5148 49 1 0.7234 -2.5454 0.5142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072297369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:46 Heat of formation + Delta-G solvation = 24.605349 kcal Electronic energy + Delta-G solvation = -31698.246649 eV Core-core repulsion = 27716.360244 eV Total energy + Delta-G solvation = -3981.886406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.38110 -39.74031 -37.79363 -37.07648 -33.91628 -33.73178 -32.82552 -31.50223 -30.61592 -29.89320 -29.55941 -25.76585 -25.70832 -25.20795 -24.36659 -22.96062 -22.02690 -20.78158 -20.65378 -19.39349 -18.61765 -17.82874 -17.48597 -16.32155 -16.12911 -15.58574 -15.34319 -15.15447 -14.80501 -14.77435 -14.32747 -14.14617 -13.86122 -13.66453 -13.47425 -13.16589 -13.05249 -13.00271 -12.94514 -12.85250 -12.65402 -12.40255 -12.19287 -12.08688 -12.05630 -11.61590 -11.47511 -11.21725 -11.16900 -10.98340 -10.93290 -10.80490 -10.74665 -10.46893 -9.93164 -9.75842 -9.55026 -9.45729 -9.15894 -9.13345 -8.61912 -8.39888 -7.83349 -7.78513 -7.05788 -4.61317 0.72690 1.36450 1.78464 1.94457 2.48173 2.79851 3.02215 3.14089 3.17901 3.23327 3.46212 3.88323 3.98980 4.40138 4.64610 4.69884 4.78336 4.87191 4.96843 4.99861 5.11037 5.22119 5.25101 5.28846 5.29196 5.39217 5.44381 5.58073 5.59614 5.69248 5.72433 5.76149 5.77199 5.88126 5.90722 5.93911 5.95565 6.03358 6.14165 6.20300 6.29833 6.30586 6.51341 6.61498 6.76990 6.93221 7.16543 7.36545 7.44291 7.66946 7.72750 7.82905 7.86287 8.20687 8.45674 8.58963 8.66153 9.96065 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.006542 B = 0.004977 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4279.314943 B = 5624.944351 C = 8790.139786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.061 3.939 3 N -0.464 5.464 4 C 0.063 3.937 5 C -0.028 4.028 6 H 0.105 0.895 7 C -0.112 4.112 8 C -0.130 4.130 9 C 0.108 3.892 10 N -0.609 5.609 11 C 0.571 3.429 12 O -0.548 6.548 13 C -0.100 4.100 14 C -0.187 4.187 15 C -0.083 4.083 16 C -0.218 4.218 17 C 0.085 3.915 18 C -0.442 4.442 19 H 0.092 0.908 20 C 0.085 3.915 21 N -0.803 5.803 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.241 1.241 26 C -0.186 4.186 27 C 0.096 3.904 28 S 0.122 5.878 29 C -0.231 4.231 30 C -0.073 4.073 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.286 0.714 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.129 0.871 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -3.714 15.914 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 N -0.178 5.178 4 C -0.215 4.215 5 C -0.051 4.051 6 H 0.123 0.877 7 C -0.150 4.150 8 C -0.169 4.169 9 C -0.014 4.014 10 N -0.342 5.342 11 C 0.362 3.638 12 O -0.427 6.427 13 C -0.103 4.103 14 C -0.207 4.207 15 C -0.101 4.101 16 C -0.238 4.238 17 C 0.082 3.918 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.135 4.135 21 N -0.427 5.427 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.219 1.219 25 H -0.165 1.165 26 C -0.205 4.205 27 C -0.028 4.028 28 S 0.379 5.621 29 C -0.352 4.352 30 C -0.132 4.132 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.088 0.912 46 H 0.146 0.854 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.287 -3.455 15.801 16.225 hybrid contribution -1.586 0.346 -0.288 1.649 sum -2.873 -3.109 15.513 16.080 Atomic orbital electron populations 1.20354 0.87353 1.02901 1.03072 1.20119 0.98067 0.86237 1.02611 1.66089 1.04459 1.31596 1.15642 1.26612 0.93836 0.97524 1.03562 1.20249 0.93013 0.95118 0.96710 0.87658 1.21655 0.97390 0.99241 0.96750 1.21891 0.98082 0.98796 0.98106 1.21586 0.93012 1.03205 0.83611 1.47876 1.35659 1.32481 1.18192 1.18864 0.81614 0.80007 0.83286 1.90677 1.38096 1.31990 1.81908 1.19390 1.01173 0.95201 0.94538 1.20365 1.06401 0.96212 0.97753 1.20560 0.97689 0.96367 0.95494 1.21165 1.08354 0.92961 1.01291 1.17641 0.91095 0.93086 0.89968 1.19480 1.08346 0.94125 1.25035 0.88982 1.26146 0.99413 0.96368 0.91553 1.69669 1.27445 1.26607 1.18984 0.86369 0.78205 0.80627 0.81271 1.19605 1.21850 1.16450 1.21376 1.06757 0.94421 0.97975 1.22552 0.90041 0.90979 0.99240 1.83820 1.06821 1.02935 1.68540 1.25670 0.95253 1.00930 1.13311 1.20230 1.00826 0.89076 1.03087 0.90491 0.90901 0.90793 0.91173 0.91325 0.91099 0.90347 0.88769 0.91597 0.87780 0.88072 0.88018 0.90305 0.86864 0.91227 0.85357 0.90351 0.91321 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.06 36.01 0.36 -0.48 16 2 C 0.06 0.86 6.74 -84.22 -0.57 0.29 16 3 N -0.46 -7.38 10.53 -8.06 -0.08 -7.47 16 4 C 0.06 0.92 6.04 -13.46 -0.08 0.84 16 5 C -0.03 -0.38 2.77 -91.65 -0.25 -0.63 16 6 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 7 C -0.11 -1.18 5.05 -26.69 -0.13 -1.31 16 8 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 9 C 0.11 1.37 6.44 -3.71 -0.02 1.35 16 10 N -0.61 -9.77 2.97 -173.86 -0.52 -10.28 16 11 C 0.57 11.33 7.41 -12.31 -0.09 11.24 16 12 O -0.55 -12.01 16.19 5.32 0.09 -11.93 16 13 C -0.10 -2.15 5.36 -105.04 -0.56 -2.72 16 14 C -0.19 -4.04 9.61 -38.92 -0.37 -4.42 16 15 C -0.08 -1.78 10.01 -39.73 -0.40 -2.18 16 16 C -0.22 -5.12 7.05 -38.81 -0.27 -5.39 16 17 C 0.09 2.07 5.19 -106.87 -0.55 1.51 16 18 C -0.44 -11.37 9.59 -37.73 -0.36 -11.73 16 19 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 20 C 0.08 2.14 5.44 -17.34 -0.09 2.05 16 21 N -0.80 -20.64 13.93 55.55 0.77 -19.86 16 22 Si 0.91 20.28 24.40 -169.99 -4.15 16.13 16 23 H -0.27 -5.84 6.71 56.52 0.38 -5.46 16 24 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.24 -5.54 6.67 56.52 0.38 -5.17 16 26 C -0.19 -4.10 7.10 -38.44 -0.27 -4.37 16 27 C 0.10 1.47 3.97 -3.70 -0.01 1.45 16 28 S 0.12 1.55 22.45 -107.50 -2.41 -0.86 16 29 C -0.23 -2.91 6.59 -35.92 -0.24 -3.15 16 30 C -0.07 -0.67 10.10 36.00 0.36 -0.30 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.67 7.98 -51.93 -0.41 0.25 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 2.14 7.96 -52.49 -0.42 1.72 16 41 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.37 4.26 -52.49 -0.22 2.14 16 43 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 44 H 0.11 2.32 5.78 -52.49 -0.30 2.01 16 45 H 0.07 0.99 7.65 -51.93 -0.40 0.59 16 46 H 0.13 2.35 4.31 -51.93 -0.22 2.13 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.57 6.76 -51.93 -0.35 0.22 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -29.78 397.64 -10.92 -40.70 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.88 Total: 7.04 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.73 Total: -19.45 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.17 Total: -37.62 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.15 Total: 16.13 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.41 Total: -0.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.78 -10.92 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072297369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.303 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds