Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 126.12836 * 2 1 4 4 C 1.39872 * 107.92005 * 180.14919 * 3 2 1 5 5 C 1.50693 * 125.89559 * 179.86911 * 4 3 2 6 6 H 1.09009 * 109.49544 * 154.65167 * 5 4 3 7 7 C 1.53041 * 109.49867 * 274.71392 * 5 4 3 8 8 C 1.53034 * 109.54010 * 181.31956 * 7 5 4 9 9 C 1.53184 * 109.31530 * 298.63444 * 8 7 5 10 10 N 1.46932 * 108.77339 * 54.63275 * 9 8 7 11 11 C 1.34774 * 120.62676 * 126.41501 * 10 9 8 12 12 O 1.21281 * 119.99892 * 179.97438 * 11 10 9 13 13 C 1.50701 * 120.00266 * 359.97438 * 11 10 9 14 14 O 1.42902 * 109.47040 * 179.97438 * 13 11 10 15 15 C 1.35673 * 116.99978 * 179.97438 * 14 13 11 16 16 C 1.39310 * 119.81706 * 359.73054 * 15 14 13 17 17 C 1.36445 * 120.18508 * 179.75786 * 16 15 14 18 18 C 1.40830 * 119.80879 * 0.51135 * 17 16 15 19 19 C 1.41221 * 120.17889 * 179.71728 * 18 17 16 20 20 H 1.07992 * 120.00096 * 204.56772 * 19 18 17 21 21 C 1.39895 * 119.99757 * 24.57237 * 19 18 17 22 22 N 1.30883 * 119.99893 * 17.91393 * 21 19 18 23 23 Si 1.86795 * 119.99907 * 197.92401 * 21 19 18 24 24 H 1.48502 * 109.47224 * 59.99526 * 23 21 19 25 25 H 1.48498 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46927 * 299.99670 * 23 21 19 27 27 C 1.40832 * 119.64353 * 359.74242 * 18 17 16 28 28 C 1.36439 * 119.80979 * 0.02562 * 27 18 17 29 29 C 1.46923 * 118.73906 * 306.39293 * 10 9 8 30 30 N 1.30840 * 108.20128 * 359.60455 * 4 3 2 31 31 N 1.34952 * 126.12460 * 179.71632 * 2 1 3 32 32 H 0.97000 * 126.03894 * 359.97438 * 31 2 1 33 33 H 1.08996 * 109.47217 * 270.26379 * 1 2 3 34 34 H 1.09007 * 109.47326 * 30.26363 * 1 2 3 35 35 H 1.09005 * 109.47206 * 150.26139 * 1 2 3 36 36 H 1.08000 * 126.03718 * 0.03207 * 3 2 1 37 37 H 1.09000 * 109.46016 * 301.33934 * 7 5 4 38 38 H 1.08998 * 109.46290 * 61.29735 * 7 5 4 39 39 H 1.09004 * 109.49786 * 58.58841 * 8 7 5 40 40 H 1.09003 * 109.49821 * 178.68184 * 8 7 5 41 41 H 1.08997 * 109.58986 * 294.84995 * 9 8 7 42 42 H 1.09000 * 109.70956 * 174.49285 * 9 8 7 43 43 H 1.08992 * 109.47100 * 299.99856 * 13 11 10 44 44 H 1.08999 * 109.47009 * 59.99819 * 13 11 10 45 45 H 1.07997 * 119.91116 * 0.02562 * 16 15 14 46 46 H 1.08001 * 120.09312 * 180.25262 * 17 16 15 47 47 H 0.97007 * 119.99459 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.09641 * 179.97438 * 27 18 17 49 49 H 1.08004 * 119.90469 * 179.97438 * 28 27 18 50 50 H 1.08995 * 109.58775 * 293.82292 * 29 10 9 51 51 H 1.09006 * 109.70295 * 173.46468 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0035 5 6 4.8542 1.5394 -0.0075 6 1 5.6947 1.0007 0.4304 7 6 5.1945 1.9341 -1.4464 8 6 6.4532 2.8044 -1.4545 9 6 6.1907 4.0825 -0.6519 10 7 5.7229 3.7103 0.6903 11 6 6.3363 4.1923 1.7893 12 8 5.9403 3.8779 2.8917 13 6 7.5141 5.1218 1.6484 14 8 7.9860 5.4926 2.9453 15 6 9.0508 6.3319 2.9965 16 6 9.6332 6.7849 1.8149 17 6 10.7011 7.6331 1.8576 18 6 11.2211 8.0419 3.1009 19 6 12.3300 8.9148 3.1543 20 1 12.9695 8.9229 4.0245 21 6 12.5999 9.7691 2.0799 22 7 11.6681 10.0249 1.1971 23 14 14.2903 10.5445 1.9051 24 1 15.3144 9.4764 1.7803 25 1 14.3189 11.4012 0.6925 26 1 14.5815 11.3719 3.1033 27 6 10.6298 7.5750 4.2908 28 6 9.5595 6.7310 4.2305 29 6 4.5735 2.8032 0.8115 30 7 3.6334 -0.6525 0.0031 31 7 2.3026 -1.0900 0.0054 32 1 2.0055 -2.0134 0.0103 33 1 -0.3633 0.0047 1.0276 34 1 -0.3634 0.8876 -0.5179 35 1 -0.3634 -0.8924 -0.5098 36 1 1.9741 2.1210 0.0005 37 1 5.3707 1.0353 -2.0375 38 1 4.3634 2.4936 -1.8758 39 1 7.2788 2.2543 -1.0028 40 1 6.7083 3.0657 -2.4815 41 1 5.4274 4.6781 -1.1527 42 1 7.1108 4.6611 -0.5708 43 1 8.3111 4.6180 1.1017 44 1 7.2086 6.0153 1.1041 45 1 9.2356 6.4674 0.8623 46 1 11.1489 7.9867 0.9406 47 1 11.8552 10.6176 0.4523 48 1 11.0230 7.8834 5.2482 49 1 9.1050 6.3717 5.1420 50 1 3.6784 3.2945 0.4300 51 1 4.4255 2.5353 1.8577 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076059892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = 14.921129 kcal Electronic energy + Delta-G solvation = -32064.814914 eV Core-core repulsion = 27737.474361 eV Total energy + Delta-G solvation = -4327.340554 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.70535 -40.26458 -38.70360 -37.50574 -36.20242 -34.20939 -33.34605 -32.56133 -32.06481 -30.38403 -29.66662 -29.37422 -27.99316 -27.44171 -25.40405 -24.72702 -23.89954 -21.86051 -21.19945 -21.05684 -20.57405 -19.61066 -18.90976 -17.70442 -17.61822 -17.28935 -16.41150 -16.01869 -15.92870 -15.41306 -15.22584 -14.94412 -14.66838 -14.49432 -14.15059 -14.10293 -13.96614 -13.92498 -13.51361 -13.32746 -13.12573 -12.93883 -12.89414 -12.70251 -12.55880 -12.36912 -11.92698 -11.69772 -11.59490 -11.49753 -11.27829 -11.20448 -11.09315 -11.03923 -11.01153 -10.81142 -10.62309 -9.97830 -9.81311 -9.67181 -9.60822 -9.33460 -9.01373 -8.95806 -8.78436 -7.65671 -7.02133 -6.73422 -4.25377 1.49644 2.36333 2.43821 2.65519 2.73152 2.77564 2.97424 3.07581 3.10674 3.22590 3.95033 4.04755 4.14418 4.24801 4.49814 4.53092 4.61052 4.62534 4.66597 4.78672 4.84167 4.96364 5.03616 5.15817 5.20421 5.28661 5.33002 5.36622 5.39409 5.41134 5.51067 5.55483 5.59559 5.67657 5.70561 5.81572 5.86152 6.04146 6.07243 6.23902 6.29276 6.36372 6.68802 6.89080 6.91581 7.06396 7.21966 7.27736 7.35346 7.40815 7.55962 7.88529 7.99637 8.13929 8.20710 8.43253 8.63872 8.89991 8.98655 10.21435 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.001538 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.770399 B =18206.659733 C =18863.659150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.086 3.914 3 C -0.267 4.267 4 C 0.093 3.907 5 C -0.023 4.023 6 H 0.090 0.910 7 C -0.106 4.106 8 C -0.136 4.136 9 C 0.102 3.898 10 N -0.615 5.615 11 C 0.521 3.479 12 O -0.516 6.516 13 C 0.054 3.946 14 O -0.305 6.305 15 C -0.013 4.013 16 C -0.174 4.174 17 C -0.134 4.134 18 C 0.088 3.912 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.800 5.800 23 Si 0.907 3.093 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.195 4.195 28 C -0.108 4.108 29 C 0.126 3.874 30 N -0.290 5.290 31 N -0.477 5.477 32 H 0.436 0.564 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.122 0.878 47 H 0.280 0.720 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.073 0.927 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.366 -16.607 -11.176 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 C -0.296 4.296 4 C -0.075 4.075 5 C -0.044 4.044 6 H 0.109 0.891 7 C -0.145 4.145 8 C -0.174 4.174 9 C -0.021 4.021 10 N -0.352 5.352 11 C 0.309 3.691 12 O -0.390 6.390 13 C -0.026 4.026 14 O -0.220 6.220 15 C -0.056 4.056 16 C -0.193 4.193 17 C -0.153 4.153 18 C 0.086 3.914 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.141 4.141 22 N -0.426 5.426 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.215 4.215 28 C -0.126 4.126 29 C 0.003 3.997 30 N -0.113 5.113 31 N -0.186 5.186 32 H 0.280 0.720 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.140 0.860 47 H 0.091 0.909 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.091 0.909 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.996 -17.721 -10.582 28.051 hybrid contribution 0.069 0.658 -0.573 0.876 sum -18.927 -17.063 -11.155 27.817 Atomic orbital electron populations 1.20475 0.87183 1.03968 1.03601 1.21140 0.94641 0.87765 1.00720 1.21147 0.91578 0.99295 1.17552 1.22028 0.95247 0.91360 0.98843 1.19901 0.93487 0.93642 0.97361 0.89121 1.21513 0.98037 1.00097 0.94807 1.21944 0.98293 0.96271 1.00878 1.21853 1.00848 0.97006 0.82361 1.47971 1.32845 1.48322 1.06018 1.20436 0.83786 0.80941 0.83948 1.90709 1.64716 1.58267 1.25336 1.22129 0.94676 0.97772 0.87993 1.85915 1.46912 1.63660 1.25480 1.18603 0.92325 1.00073 0.94574 1.20576 1.00725 1.03330 0.94708 1.20921 0.97439 0.98098 0.98863 1.17604 0.92009 0.91110 0.90718 1.19449 1.09915 1.17566 1.02343 0.90496 1.25870 0.97999 0.95487 0.94772 1.69834 1.32621 1.28685 1.11463 0.86384 0.82674 0.79302 0.78444 1.18900 1.20436 1.19051 1.20609 0.98775 1.04477 0.97616 1.19623 0.98307 1.00803 0.93898 1.21485 0.87783 0.88427 1.02036 1.77328 0.96198 1.12506 1.25234 1.46292 1.04048 1.08213 1.60033 0.71984 0.89986 0.89419 0.91121 0.83413 0.91300 0.91180 0.90958 0.89980 0.90732 0.89212 0.90115 0.90049 0.88831 0.86048 0.90948 0.88110 0.88314 0.90870 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.31 10.43 36.01 0.38 0.06 16 2 C 0.09 0.61 7.21 -82.26 -0.59 0.02 16 3 C -0.27 -2.27 9.87 -40.01 -0.39 -2.66 16 4 C 0.09 0.94 6.14 -82.41 -0.51 0.43 16 5 C -0.02 -0.22 2.80 -91.66 -0.26 -0.47 16 6 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 7 C -0.11 -0.80 5.15 -26.69 -0.14 -0.94 16 8 C -0.14 -0.97 6.08 -26.62 -0.16 -1.13 16 9 C 0.10 0.85 6.34 -3.71 -0.02 0.83 16 10 N -0.62 -7.14 2.97 -172.77 -0.51 -7.66 16 11 C 0.52 8.31 7.78 -10.99 -0.09 8.23 16 12 O -0.52 -10.39 15.92 -14.35 -0.23 -10.62 16 13 C 0.05 0.88 3.56 36.01 0.13 1.01 16 14 O -0.30 -6.65 9.65 -38.63 -0.37 -7.02 16 15 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 16 C -0.17 -3.99 8.96 -39.83 -0.36 -4.35 16 17 C -0.13 -3.41 8.64 -39.25 -0.34 -3.74 16 18 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 19 C -0.46 -12.20 9.04 -37.83 -0.34 -12.54 16 20 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 21 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 22 N -0.80 -20.38 10.96 55.55 0.61 -19.77 16 23 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 27 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 28 C -0.11 -2.57 9.92 -39.83 -0.40 -2.97 16 29 C 0.13 1.32 5.40 -3.71 -0.02 1.30 16 30 N -0.29 -3.22 12.70 33.67 0.43 -2.79 16 31 N -0.48 -3.76 7.36 33.48 0.25 -3.52 16 32 H 0.44 2.08 8.96 -182.61 -1.64 0.44 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.15 1.02 7.29 -52.49 -0.38 0.64 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.73 5.93 -51.93 -0.31 0.42 16 43 H 0.08 1.18 7.19 -51.93 -0.37 0.80 16 44 H 0.08 1.21 7.46 -51.93 -0.39 0.82 16 45 H 0.09 1.81 6.27 -52.49 -0.33 1.48 16 46 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 47 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 48 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 49 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 50 H 0.07 0.64 7.04 -51.93 -0.37 0.27 16 51 H 0.10 1.24 7.01 -51.93 -0.36 0.87 16 LS Contribution 413.85 15.07 6.24 6.24 Total: -1.00 -33.90 413.85 -11.73 -45.64 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.67 Total: 5.21 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -4.44 Total: -19.19 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.77 Total: -33.73 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.60 Total: -17.64 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.90 -11.73 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076059892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.556 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds