Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35923 * 116.99949 * 2 1 4 4 C 1.38609 * 120.09027 * 4.87937 * 3 2 1 5 5 C 1.38192 * 120.01182 * 180.27935 * 4 3 2 6 6 C 1.38317 * 120.18922 * 359.74642 * 5 4 3 7 7 C 1.50699 * 119.91266 * 180.02562 * 6 5 4 8 8 C 1.38152 * 120.17292 * 359.97438 * 6 5 4 9 9 C 1.38763 * 119.98591 * 0.02704 * 8 6 5 10 10 N 1.40182 * 120.09194 * 179.97438 * 9 8 6 11 11 C 1.35835 * 124.95552 * 6.37081 * 10 9 8 12 12 C 1.35368 * 107.12649 * 179.72797 * 11 10 9 13 13 C 1.41516 * 105.56021 * 0.35464 * 12 11 10 14 14 C 1.47648 * 126.44578 * 179.90215 * 13 12 11 15 15 O 1.21578 * 120.00323 * 188.48178 * 14 13 12 16 16 N 1.34780 * 120.00134 * 8.47635 * 14 13 12 17 17 C 1.46492 * 120.00231 * 184.16694 * 16 14 13 18 18 C 1.50706 * 109.46837 * 270.00138 * 17 16 14 19 19 H 1.07996 * 120.00397 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99672 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00351 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47027 * 59.99713 * 22 20 18 24 24 H 1.48501 * 109.47046 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47090 * 300.00126 * 22 20 18 26 26 C 1.46502 * 119.99829 * 4.16535 * 16 14 13 27 27 C 1.53000 * 109.47327 * 268.68876 * 26 16 14 28 28 C 1.52998 * 117.52201 * 146.31743 * 27 26 16 29 29 C 1.52999 * 60.00196 * 107.48079 * 28 27 26 30 30 N 1.28475 * 124.95344 * 186.32562 * 10 9 8 31 31 H 1.09003 * 109.47221 * 61.87160 * 1 2 3 32 32 H 1.09004 * 109.47335 * 181.87143 * 1 2 3 33 33 H 1.09001 * 109.47307 * 301.87402 * 1 2 3 34 34 H 1.08002 * 119.98702 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.90360 * 179.76612 * 5 4 3 36 36 H 1.09004 * 109.46521 * 269.97424 * 7 6 5 37 37 H 1.08996 * 109.47362 * 29.97352 * 7 6 5 38 38 H 1.08996 * 109.47133 * 149.97524 * 7 6 5 39 39 H 1.08000 * 120.00883 * 180.02562 * 8 6 5 40 40 H 1.07996 * 126.43371 * 359.93795 * 11 10 9 41 41 H 1.08009 * 127.21978 * 180.24048 * 12 11 10 42 42 H 1.09003 * 109.47243 * 29.99687 * 17 16 14 43 43 H 1.09004 * 109.47320 * 149.99934 * 17 16 14 44 44 H 0.96998 * 120.00138 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47464 * 148.68769 * 26 16 14 46 46 H 1.09006 * 109.47399 * 28.68460 * 26 16 14 47 47 H 1.09007 * 115.54900 * 0.60802 * 27 26 16 48 48 H 1.09002 * 117.49666 * 214.97269 * 28 27 26 49 49 H 1.08997 * 117.49626 * 359.97438 * 28 27 26 50 50 H 1.08995 * 117.49710 * 252.51245 * 29 28 27 51 51 H 1.09000 * 117.49906 * 107.48812 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2968 2.3728 0.1020 5 6 1.9254 3.6034 0.0960 6 6 3.3026 3.6805 -0.0063 7 6 3.9816 5.0258 -0.0116 8 6 4.0573 2.5274 -0.1026 9 6 3.4336 1.2878 -0.0973 10 7 4.1973 0.1164 -0.1954 11 6 5.5546 0.0683 -0.1765 12 6 5.9090 -1.2334 -0.2879 13 6 4.6930 -1.9512 -0.3820 14 6 4.5463 -3.4137 -0.5218 15 8 3.4534 -3.8963 -0.7471 16 7 5.6240 -4.2138 -0.3996 17 6 5.4960 -5.6551 -0.6284 18 6 5.1537 -6.3411 0.6691 19 1 5.0431 -5.7615 1.5736 20 6 4.9828 -7.7089 0.7015 21 7 5.1180 -8.4148 -0.3999 22 14 4.5592 -8.5594 2.3098 23 1 3.2747 -8.0249 2.8291 24 1 4.4293 -10.0204 2.0779 25 1 5.6364 -8.3088 3.3009 26 6 6.9236 -3.6421 -0.0381 27 6 7.6924 -3.2784 -1.3100 28 6 8.6036 -2.0505 -1.2586 29 6 9.2122 -3.4538 -1.2913 30 7 3.7153 -1.0685 -0.3155 31 1 -0.3634 0.4845 -0.9063 32 1 -0.3634 -1.0271 0.0336 33 1 -0.3634 0.5427 0.8727 34 1 0.2212 2.3161 0.1820 35 1 1.3396 4.5076 0.1718 36 1 4.0677 5.3852 -1.0371 37 1 3.3926 5.7325 0.5729 38 1 4.9758 4.9327 0.4254 39 1 5.1325 2.5906 -0.1819 40 1 6.2250 0.9101 -0.0859 41 1 6.9099 -1.6389 -0.3037 42 1 4.7054 -5.8387 -1.3560 43 1 6.4388 -6.0477 -1.0093 44 1 4.9982 -9.3771 -0.3770 45 1 7.4948 -4.3720 0.5355 46 1 6.7716 -2.7458 0.5633 47 1 7.1738 -3.4816 -2.2471 48 1 8.6844 -1.4456 -2.1617 49 1 8.6552 -1.5011 -0.3186 50 1 9.6644 -3.8278 -0.3728 51 1 9.6935 -3.7722 -2.2160 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078419154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = 105.003430 kcal Electronic energy + Delta-G solvation = -33657.024221 eV Core-core repulsion = 29333.589929 eV Total energy + Delta-G solvation = -4323.434292 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.70108 -40.33556 -38.91646 -37.93092 -37.27618 -34.32724 -33.96598 -32.46938 -32.10232 -30.72966 -29.69969 -28.03371 -27.80022 -26.29870 -26.18380 -24.45987 -23.26132 -22.55778 -22.11284 -20.95056 -20.66454 -20.32010 -18.86016 -18.41245 -17.32326 -16.73570 -16.40748 -16.25260 -15.98832 -15.47412 -15.34851 -14.96108 -14.84215 -14.67002 -14.47999 -14.26791 -14.05555 -14.02674 -13.89570 -13.25828 -13.20097 -12.62259 -12.52977 -12.48043 -12.33610 -12.09467 -11.87643 -11.57448 -11.42386 -11.36790 -11.25973 -11.09975 -11.05345 -10.81456 -10.55034 -10.46511 -10.17238 -10.10496 -10.02934 -9.72294 -9.54146 -9.00404 -8.92852 -8.80988 -8.34926 -7.93852 -7.58968 -5.96088 -3.99893 0.58697 0.96669 2.22423 2.41803 2.45762 3.09431 3.36939 3.38255 3.42157 3.46373 3.86404 3.91999 4.17845 4.25032 4.42132 4.52252 4.56081 4.66829 4.79451 4.86807 4.95820 4.99251 5.04301 5.05469 5.06701 5.12567 5.21507 5.23679 5.33542 5.38505 5.46484 5.49736 5.54961 5.63085 5.70846 5.73704 5.79630 5.86021 5.88374 5.99594 6.04106 6.08838 6.12074 6.23064 6.28310 6.54545 6.62034 6.91589 7.16364 7.27248 7.51580 7.62740 8.00377 8.19607 8.31845 8.51222 8.99326 9.20050 9.64520 11.12004 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.002709 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.034561 B =10331.840699 C =12380.928680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.274 6.274 3 C 0.135 3.865 4 C -0.191 4.191 5 C -0.082 4.082 6 C -0.107 4.107 7 C -0.108 4.108 8 C -0.093 4.093 9 C 0.112 3.888 10 N -0.239 5.239 11 C -0.036 4.036 12 C -0.224 4.224 13 C 0.002 3.998 14 C 0.587 3.413 15 O -0.521 6.521 16 N -0.582 5.582 17 C 0.250 3.750 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.119 3.881 27 C -0.164 4.164 28 C -0.191 4.191 29 C -0.174 4.174 30 N -0.211 5.211 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.263 0.737 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 28.369 -0.089 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.185 6.185 3 C 0.086 3.914 4 C -0.210 4.210 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.164 4.164 8 C -0.114 4.114 9 C 0.020 3.980 10 N -0.021 5.021 11 C -0.174 4.174 12 C -0.250 4.250 13 C -0.161 4.161 14 C 0.372 3.628 15 O -0.395 6.395 16 N -0.314 5.314 17 C 0.131 3.869 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 C -0.005 4.005 27 C -0.184 4.184 28 C -0.228 4.228 29 C -0.211 4.211 30 N -0.042 5.042 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.194 0.806 41 H 0.214 0.786 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.339 27.804 -0.293 27.807 hybrid contribution 0.452 -0.443 0.839 1.051 sum 0.113 27.361 0.546 27.366 Atomic orbital electron populations 1.23167 0.78525 1.04751 1.00707 1.86546 1.20901 1.24081 1.86948 1.18743 0.90183 0.86180 0.96315 1.21185 1.00543 0.91476 1.07777 1.20907 0.93872 0.97183 0.98128 1.19570 0.93463 0.94905 1.02848 1.20717 1.00440 0.92792 1.02498 1.20538 1.00423 0.88874 1.01522 1.16988 0.87726 0.83921 1.09316 1.42799 1.04485 1.04145 1.50694 1.23015 0.84491 0.99869 1.10060 1.23521 1.01663 0.91909 1.07886 1.22372 0.90091 0.95545 1.08098 1.16783 0.84779 0.82765 0.78511 1.90770 1.25287 1.75365 1.48116 1.47891 1.06393 1.09789 1.67291 1.19319 0.98170 0.71935 0.97432 1.21414 1.47888 0.92061 0.94890 0.92433 1.24912 0.95295 0.97256 0.96580 1.69922 1.49884 1.06860 1.26824 0.86576 0.79096 0.78186 0.83670 1.20199 1.21246 1.20281 1.21674 0.84974 0.99891 0.93987 1.23048 0.92574 1.01336 1.01430 1.23088 1.05452 0.91304 1.02949 1.23022 0.95780 0.98938 1.03348 1.74015 1.25188 0.88632 1.16389 0.92715 0.87569 0.92843 0.84357 0.85153 0.91071 0.91329 0.91382 0.84336 0.80567 0.78551 0.93846 0.94489 0.92745 0.89536 0.89149 0.87223 0.88796 0.88497 0.88499 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.84 101.05 0.99 1.24 16 2 O -0.27 -4.26 8.56 -19.50 -0.17 -4.43 16 3 C 0.13 1.79 6.68 -39.04 -0.26 1.53 16 4 C -0.19 -1.82 9.06 -39.46 -0.36 -2.18 16 5 C -0.08 -0.64 9.69 -39.57 -0.38 -1.02 16 6 C -0.11 -0.84 5.88 -104.63 -0.62 -1.45 16 7 C -0.11 -0.52 10.01 36.00 0.36 -0.16 16 8 C -0.09 -0.89 9.08 -39.42 -0.36 -1.25 16 9 C 0.11 1.51 6.66 -83.44 -0.56 0.96 16 10 N -0.24 -3.83 3.52 -10.45 -0.04 -3.87 16 11 C -0.04 -0.47 10.77 -16.80 -0.18 -0.65 16 12 C -0.22 -3.42 8.26 -39.36 -0.33 -3.75 16 13 C 0.00 0.04 6.95 -82.75 -0.57 -0.53 16 14 C 0.59 14.19 7.67 -12.42 -0.10 14.10 16 15 O -0.52 -14.91 16.72 5.30 0.09 -14.82 16 16 N -0.58 -13.19 2.43 -176.24 -0.43 -13.62 16 17 C 0.25 6.74 5.14 -5.20 -0.03 6.71 16 18 C -0.52 -15.28 9.39 -34.44 -0.32 -15.60 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 21 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 22 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.12 2.04 5.19 -4.04 -0.02 2.02 16 27 C -0.16 -2.36 5.09 -90.62 -0.46 -2.82 16 28 C -0.19 -2.01 8.60 -26.73 -0.23 -2.24 16 29 C -0.17 -2.04 10.20 -26.73 -0.27 -2.31 16 30 N -0.21 -4.28 9.97 33.42 0.33 -3.94 16 31 H 0.05 0.47 7.97 -51.93 -0.41 0.06 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.44 7.33 -51.93 -0.38 0.06 16 34 H 0.14 1.01 6.29 -52.49 -0.33 0.67 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 38 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 39 H 0.14 0.98 6.68 -52.49 -0.35 0.63 16 40 H 0.18 1.46 7.00 -52.49 -0.37 1.09 16 41 H 0.20 2.57 1.11 -52.48 -0.06 2.51 16 42 H 0.04 1.31 7.48 -51.93 -0.39 0.93 16 43 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.09 1.51 8.00 -51.93 -0.42 1.09 16 46 H 0.09 1.41 4.48 -51.93 -0.23 1.17 16 47 H 0.11 1.77 8.10 -51.93 -0.42 1.35 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.10 0.87 7.29 -51.93 -0.38 0.49 16 50 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 415.82 15.07 6.27 6.27 Total: -1.00 -38.14 415.82 -9.09 -47.23 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.08 Total: 1.81 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.78 Total: -5.72 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.60 Total: -47.76 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.08 Total: -19.25 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -38.14 -9.09 -47.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078419154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.232 kcal (2) G-P(sol) polarization free energy of solvation -38.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds