Wall clock time and date at job start Tue Mar 31 2020 06:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 120.00035 * 2 1 4 4 N 1.34779 * 119.99910 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99752 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.46950 * 179.97438 * 5 4 2 7 7 C 1.38364 * 119.85095 * 89.99863 * 6 5 4 8 8 C 1.37951 * 120.14783 * 179.97438 * 7 6 5 9 9 C 1.39588 * 119.85066 * 0.03075 * 8 7 6 10 10 C 1.47815 * 120.14456 * 180.02562 * 9 8 7 11 11 O 1.21563 * 120.00342 * 25.72842 * 10 9 8 12 12 N 1.34781 * 119.99922 * 205.73698 * 10 9 8 13 13 C 1.46503 * 119.99837 * 5.54804 * 12 10 9 14 14 C 1.50706 * 109.46626 * 252.68603 * 13 12 10 15 15 H 1.07990 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99580 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00136 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99634 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47318 * 90.00139 * 18 16 14 20 20 H 1.48508 * 109.47044 * 209.99768 * 18 16 14 21 21 H 1.48501 * 109.47650 * 330.00085 * 18 16 14 22 22 C 1.39949 * 120.00083 * 185.54500 * 12 10 9 23 23 C 1.38873 * 120.04669 * 186.97343 * 22 12 10 24 24 C 1.38112 * 119.95032 * 179.72078 * 23 22 12 25 25 C 1.38480 * 120.04553 * 0.56058 * 24 23 22 26 26 F 1.35105 * 119.94860 * 179.69627 * 25 24 23 27 27 C 1.38471 * 120.09473 * 359.72141 * 25 24 23 28 28 C 1.38111 * 120.04729 * 359.97438 * 27 25 24 29 29 C 1.39588 * 119.70806 * 0.27042 * 9 8 7 30 30 C 1.37949 * 119.85221 * 359.42521 * 29 9 8 31 31 H 1.09004 * 109.47031 * 239.99708 * 1 2 3 32 32 H 1.09002 * 109.47426 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.47645 * 119.99630 * 1 2 3 34 34 H 0.96995 * 120.00211 * 359.97438 * 4 2 1 35 35 H 1.09004 * 109.46580 * 60.00259 * 5 4 2 36 36 H 1.08992 * 109.47121 * 300.00158 * 5 4 2 37 37 H 1.08007 * 119.92406 * 0.03109 * 7 6 5 38 38 H 1.07997 * 120.07512 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.47139 * 12.68686 * 13 12 10 40 40 H 1.08995 * 109.47254 * 132.69317 * 13 12 10 41 41 H 0.96996 * 120.00062 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.02157 * 359.97438 * 23 22 12 43 43 H 1.08002 * 119.97570 * 180.27494 * 24 23 22 44 44 H 1.08001 * 119.97740 * 179.97438 * 27 25 24 45 45 H 1.08000 * 120.02114 * 179.97438 * 28 27 25 46 46 H 1.08002 * 120.07011 * 179.70857 * 29 9 8 47 47 H 1.07998 * 119.93242 * 180.27172 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 6 4.3773 -3.2376 -1.2010 8 6 4.8376 -4.5380 -1.2080 9 6 5.0717 -5.1987 -0.0009 10 6 5.5655 -6.5919 -0.0008 11 8 6.1994 -7.0122 -0.9492 12 7 5.3128 -7.3964 1.0506 13 6 4.4475 -6.9313 2.1374 14 6 5.2850 -6.6370 3.3553 15 1 6.3547 -6.7815 3.3228 16 6 4.6855 -6.1822 4.5107 17 7 3.3828 -6.0057 4.5501 18 14 5.7236 -5.8167 6.0199 19 1 6.1645 -4.3990 5.9860 20 1 4.9181 -6.0554 7.2445 21 1 6.9136 -6.7050 6.0293 22 6 5.8769 -8.6761 1.1041 23 6 5.5048 -9.5585 2.1097 24 6 6.0584 -10.8229 2.1573 25 6 6.9926 -11.2068 1.2099 26 9 7.5376 -12.4420 1.2618 27 6 7.3694 -10.3264 0.2097 28 6 6.8135 -9.0633 0.1548 29 6 4.8325 -4.5397 1.2062 30 6 4.3782 -3.2371 1.1991 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3634 1.0277 0.0005 33 1 -0.3634 -0.5137 -0.8899 34 1 1.6959 -2.0072 -0.0005 35 1 4.0095 -0.6536 0.8889 36 1 4.0088 -0.6532 -0.8910 37 1 4.1961 -2.7250 -2.1343 38 1 5.0164 -5.0438 -2.1453 39 1 3.9281 -6.0251 1.8259 40 1 3.7174 -7.7044 2.3768 41 1 2.9611 -5.6862 5.3630 42 1 4.7799 -9.2577 2.8517 43 1 5.7660 -11.5111 2.9366 44 1 8.0985 -10.6276 -0.5279 45 1 7.1080 -8.3768 -0.6252 46 1 5.0071 -5.0469 2.1435 47 1 4.1969 -2.7246 2.1322 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078913065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:47 Heat of formation + Delta-G solvation = -34.823096 kcal Electronic energy + Delta-G solvation = -32712.122962 eV Core-core repulsion = 28161.446370 eV Total energy + Delta-G solvation = -4550.676592 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.46863 -40.73414 -39.77193 -38.77898 -37.55891 -35.69739 -34.87817 -32.98492 -31.92576 -30.85671 -30.68050 -29.98603 -28.82722 -27.72964 -26.05478 -23.68084 -23.09561 -22.60450 -21.99335 -21.12610 -20.72938 -19.60285 -17.32426 -17.23715 -17.22086 -16.95516 -16.60701 -16.34816 -15.71415 -15.54399 -15.20408 -15.04251 -14.96140 -14.79044 -14.57798 -14.26445 -13.85944 -13.62766 -13.39342 -13.17985 -13.08345 -12.95092 -12.82700 -12.72038 -12.65827 -12.47278 -12.23819 -12.12606 -11.91197 -11.81592 -11.31056 -11.18736 -11.02040 -10.74124 -10.45942 -10.30928 -10.12395 -10.07030 -9.33397 -9.21849 -9.05239 -8.92619 -8.73763 -8.65333 -8.46211 -7.28819 -6.50932 -4.62433 0.92438 1.62144 1.63790 1.70687 2.51516 2.94819 3.06282 3.15669 3.19337 3.32351 3.41521 4.03381 4.07247 4.24721 4.57431 4.71862 4.74347 4.79407 4.86861 4.97695 5.08394 5.16934 5.19340 5.24335 5.28445 5.35585 5.53330 5.63836 5.70558 5.75113 5.78638 5.87418 5.96660 6.09057 6.24334 6.26824 6.33507 6.48766 6.51388 6.62322 6.63582 6.72437 6.76591 6.82688 6.91029 7.04924 7.19614 7.37761 7.42815 7.52630 7.62858 7.89308 8.08193 8.42376 8.55793 9.06952 10.53025 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.002682 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.244731 B =10437.224764 C =12463.224024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.552 6.552 4 N -0.725 5.725 5 C 0.160 3.840 6 C -0.093 4.093 7 C -0.127 4.127 8 C -0.066 4.066 9 C -0.130 4.130 10 C 0.557 3.443 11 O -0.539 6.539 12 N -0.527 5.527 13 C 0.203 3.797 14 C -0.550 4.550 15 H 0.069 0.931 16 C 0.075 3.925 17 N -0.876 5.876 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.165 3.835 23 C -0.109 4.109 24 C -0.135 4.135 25 C 0.053 3.947 26 F -0.152 7.152 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.088 4.088 30 C -0.112 4.112 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.405 0.595 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.271 0.729 42 H 0.149 0.851 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.182 0.818 46 H 0.200 0.800 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 2.947 -7.197 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.430 6.430 4 N -0.377 5.377 5 C 0.037 3.963 6 C -0.094 4.094 7 C -0.145 4.145 8 C -0.085 4.085 9 C -0.133 4.133 10 C 0.350 3.650 11 O -0.420 6.420 12 N -0.245 5.245 13 C 0.085 3.915 14 C -0.588 4.588 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.512 5.512 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.194 1.194 22 C 0.069 3.931 23 C -0.129 4.129 24 C -0.155 4.155 25 C 0.033 3.967 26 F -0.131 7.131 27 C -0.158 4.158 28 C -0.167 4.167 29 C -0.105 4.105 30 C -0.131 4.131 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.239 0.761 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.198 0.802 46 H 0.216 0.784 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.170 3.601 -7.537 8.934 hybrid contribution 0.281 -0.550 1.122 1.281 sum -2.889 3.051 -6.416 7.669 Atomic orbital electron populations 1.21918 0.91643 1.05416 1.04434 1.20837 0.90653 0.83382 0.75497 1.90721 1.70944 1.31469 1.49870 1.46159 1.07121 1.09020 1.75406 1.20220 0.79821 0.93191 1.03047 1.20034 1.00314 0.95063 0.93970 1.20842 1.01729 0.94678 0.97261 1.21145 0.95948 0.94092 0.97313 1.19874 1.04839 0.93910 0.94718 1.18517 0.79535 0.85566 0.81429 1.90394 1.41254 1.74917 1.35457 1.45871 1.45288 1.11845 1.21480 1.20507 0.89786 0.97774 0.83475 1.21330 0.94849 1.46679 0.95895 0.91267 1.24949 0.95054 0.94397 0.98751 1.69913 1.08869 1.43380 1.29072 0.86476 0.80386 0.79196 0.81593 1.20061 1.20750 1.19378 1.17983 0.94255 0.85173 0.95702 1.20959 1.01464 0.91705 0.98796 1.20864 0.98084 0.97300 0.99248 1.17718 0.98845 0.81040 0.99125 1.91426 1.84860 1.40434 1.96407 1.21011 1.02057 0.94128 0.98576 1.22413 0.96023 0.96875 1.01375 1.23397 0.91500 0.94182 1.01388 1.21128 0.99896 0.94860 0.97214 0.89209 0.89067 0.89407 0.76058 0.90504 0.90695 0.85865 0.85261 0.90834 0.94039 0.91895 0.83343 0.85101 0.85379 0.80214 0.78407 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.32 36.00 0.37 -0.86 16 2 C 0.51 5.73 7.94 -10.99 -0.09 5.64 16 3 O -0.55 -8.61 17.09 5.55 0.09 -8.52 16 4 N -0.72 -7.44 5.55 -61.47 -0.34 -7.78 16 5 C 0.16 1.83 5.79 -5.19 -0.03 1.80 16 6 C -0.09 -1.17 5.25 -104.53 -0.55 -1.72 16 7 C -0.13 -1.56 9.68 -39.64 -0.38 -1.94 16 8 C -0.07 -0.96 9.59 -39.18 -0.38 -1.33 16 9 C -0.13 -2.24 5.52 -104.97 -0.58 -2.82 16 10 C 0.56 10.71 7.40 -12.34 -0.09 10.62 16 11 O -0.54 -10.72 13.12 5.31 0.07 -10.65 16 12 N -0.53 -10.41 2.75 -115.78 -0.32 -10.73 16 13 C 0.20 4.21 4.02 -5.19 -0.02 4.19 16 14 C -0.55 -12.32 6.46 -34.43 -0.22 -12.54 16 15 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.07 1.70 5.43 -17.82 -0.10 1.61 16 17 N -0.88 -20.70 13.29 55.43 0.74 -19.96 16 18 Si 0.90 18.45 29.54 -169.99 -5.02 13.43 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 C 0.16 3.18 6.32 -83.68 -0.53 2.65 16 23 C -0.11 -1.98 8.93 -39.39 -0.35 -2.33 16 24 C -0.14 -2.23 10.02 -39.54 -0.40 -2.62 16 25 C 0.05 0.87 7.30 -39.41 -0.29 0.59 16 26 F -0.15 -2.46 17.27 2.25 0.04 -2.42 16 27 C -0.14 -2.26 10.02 -39.54 -0.40 -2.66 16 28 C -0.15 -2.68 8.98 -39.40 -0.35 -3.03 16 29 C -0.09 -1.52 7.45 -39.18 -0.29 -1.82 16 30 C -0.11 -1.67 9.68 -39.64 -0.38 -2.05 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 3.47 8.46 -40.82 -0.35 3.13 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.13 1.76 7.86 -52.49 -0.41 1.35 16 39 H 0.07 1.53 4.21 -51.93 -0.22 1.31 16 40 H 0.04 0.91 6.94 -51.93 -0.36 0.55 16 41 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 42 H 0.15 2.79 6.15 -52.49 -0.32 2.47 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.18 3.40 4.69 -55.36 -0.26 3.14 16 46 H 0.20 3.96 3.28 -52.49 -0.17 3.79 16 47 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -26.89 396.52 -9.25 -36.15 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -5.43 Total: 13.14 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -5.05 Total: -8.64 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.08 Total: -38.46 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.16 Total: -19.17 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -26.89 -9.25 -36.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078913065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.325 kcal (2) G-P(sol) polarization free energy of solvation -26.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds