Wall clock time and date at job start Tue Mar 31 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65598 * 119.99868 * 2 1 4 4 O 1.42100 * 106.40198 * 178.54210 * 3 2 1 5 5 O 1.42091 * 106.40399 * 311.46413 * 3 2 1 6 6 C 1.76208 * 107.21636 * 65.00465 * 3 2 1 7 7 C 1.37836 * 119.93552 * 114.72660 * 6 3 2 8 8 C 1.39700 * 119.87001 * 179.75195 * 7 6 3 9 9 C 1.47617 * 120.12564 * 180.25054 * 8 7 6 10 10 O 1.21606 * 119.99888 * 20.23792 * 9 8 7 11 11 N 1.34770 * 119.99978 * 200.23922 * 9 8 7 12 12 C 1.36887 * 120.00260 * 11.96764 * 11 9 8 13 13 H 1.08000 * 119.99910 * 41.40114 * 12 11 9 14 14 C 1.39034 * 120.00706 * 221.39726 * 12 11 9 15 15 N 1.31376 * 119.99447 * 6.62229 * 14 12 11 16 16 Si 1.86799 * 120.00551 * 186.62803 * 14 12 11 17 17 H 1.48495 * 109.47179 * 59.99591 * 16 14 12 18 18 H 1.48497 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46837 * 299.99878 * 16 14 12 20 20 C 1.46506 * 119.99886 * 191.97179 * 11 9 8 21 21 C 1.54259 * 110.03241 * 63.17425 * 20 11 9 22 22 C 1.54965 * 104.15847 * 217.14024 * 21 20 11 23 23 C 1.54887 * 102.77884 * 37.88398 * 22 21 20 24 24 C 1.53868 * 110.03028 * 305.95255 * 20 11 9 25 25 C 1.39737 * 119.75279 * 0.53902 * 8 7 6 26 26 C 1.37803 * 119.87144 * 359.70701 * 25 8 7 27 27 C 1.38646 * 119.93401 * 294.99588 * 6 3 2 28 28 F 1.35101 * 119.87777 * 0.02562 * 27 6 3 29 29 H 1.09004 * 109.46776 * 299.99303 * 1 2 3 30 30 H 1.08995 * 109.47632 * 59.99871 * 1 2 3 31 31 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00410 * 180.02562 * 2 1 3 33 33 H 1.08003 * 120.06760 * 359.97438 * 7 6 3 34 34 H 0.97003 * 119.99708 * 185.00090 * 15 14 12 35 35 H 1.09001 * 110.01544 * 184.56439 * 20 11 9 36 36 H 1.08999 * 110.48929 * 335.77784 * 21 20 11 37 37 H 1.08991 * 110.49294 * 98.42701 * 21 20 11 38 38 H 1.09009 * 110.71831 * 279.56898 * 22 21 20 39 39 H 1.09002 * 110.93038 * 156.29896 * 22 21 20 40 40 H 1.09003 * 110.48609 * 203.40897 * 23 22 21 41 41 H 1.08998 * 110.59752 * 80.82399 * 23 22 21 42 42 H 1.09001 * 110.03491 * 238.57358 * 24 20 11 43 43 H 1.09000 * 110.03344 * 359.95116 * 24 20 11 44 44 H 1.07993 * 120.06807 * 179.73041 * 25 8 7 45 45 H 1.07997 * 119.94074 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6737 1.1003 0.0347 5 8 1.7119 2.2329 -1.0214 6 6 1.9378 2.2414 1.5255 7 6 2.9435 2.4469 2.4454 8 6 2.6615 3.0917 3.6522 9 6 3.7354 3.3197 4.6390 10 8 4.8992 3.2964 4.2873 11 7 3.4259 3.5536 5.9297 12 6 2.1499 3.3405 6.3771 13 1 1.6020 2.4688 6.0513 14 6 1.5592 4.2462 7.2511 15 7 2.1724 5.3702 7.5456 16 14 -0.1060 3.8650 8.0067 17 1 -0.0157 2.6109 8.7967 18 1 -0.5132 4.9818 8.8967 19 1 -1.1128 3.6989 6.9277 20 6 4.4552 4.0361 6.8539 21 6 4.9577 5.4245 6.4071 22 6 6.4750 5.3976 6.7211 23 6 6.8740 3.9454 6.3591 24 6 5.6730 3.0961 6.8238 25 6 1.3577 3.5147 3.9243 26 6 0.3592 3.2993 2.9993 27 6 0.6461 2.6636 1.8005 28 9 -0.3369 2.4542 0.8977 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 3.9483 2.1134 2.2321 34 1 1.7958 5.9684 8.2099 35 1 4.0520 4.0926 7.8650 36 1 4.7919 5.5647 5.3390 37 1 4.4632 6.2108 6.9773 38 1 6.6536 5.5953 7.7781 39 1 7.0139 6.1127 6.0995 40 1 7.7776 3.6534 6.8942 41 1 7.0193 3.8445 5.2835 42 1 5.8613 2.6969 7.8205 43 1 5.4978 2.2804 6.1223 44 1 1.1331 4.0097 4.8574 45 1 -0.6489 3.6254 3.2086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079053580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:15 Heat of formation + Delta-G solvation = -111.706023 kcal Electronic energy + Delta-G solvation = -33090.434191 eV Core-core repulsion = 28536.034561 eV Total energy + Delta-G solvation = -4554.399629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.120 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -49.24165 -39.81470 -38.12365 -37.14520 -35.94434 -35.81413 -35.08441 -34.69776 -31.75326 -31.13262 -30.35787 -27.76319 -27.08520 -26.12870 -25.21805 -23.25288 -23.10943 -20.64963 -19.86735 -19.61057 -18.91513 -18.53546 -17.68108 -17.45127 -16.62805 -16.46505 -16.27113 -15.72271 -15.41030 -14.86569 -14.68263 -14.58798 -14.42601 -13.95222 -13.93892 -13.70071 -13.65297 -13.37624 -12.87555 -12.76178 -12.50994 -12.42704 -12.14405 -12.03332 -11.96226 -11.78666 -11.66267 -11.57074 -11.36700 -11.26577 -10.95936 -10.61102 -10.54458 -10.38886 -10.26567 -10.16089 -9.87879 -9.75723 -9.71324 -9.25134 -9.04521 -8.63678 -8.47576 -7.66320 -6.63324 -4.37590 0.39410 0.86926 1.24649 2.91145 2.96508 3.03153 3.03600 3.30395 3.67518 3.83469 4.06564 4.22896 4.33314 4.58996 4.75459 4.89000 4.94451 5.32587 5.36240 5.45564 5.56113 5.57663 5.58019 5.61195 5.66510 5.74295 5.84357 6.06143 6.16434 6.23039 6.39769 6.46149 6.50848 6.59442 6.61265 6.68383 6.72933 6.79074 6.80988 6.93229 7.00513 7.12021 7.18060 7.27001 7.43272 7.69803 8.16603 8.76421 9.25605 9.67929 10.36467 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.003774 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.049365 B = 7417.364961 C = 9301.802273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.119 6.119 3 S 2.702 3.298 4 O -0.955 6.955 5 O -0.952 6.952 6 C -0.729 4.729 7 C 0.039 3.961 8 C -0.123 4.123 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.427 5.427 12 C -0.347 4.347 13 H 0.091 0.909 14 C 0.046 3.954 15 N -0.847 5.847 16 Si 0.911 3.089 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.169 3.831 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.130 4.130 25 C 0.003 3.997 26 C -0.189 4.189 27 C 0.185 3.815 28 F -0.128 7.128 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.418 0.582 33 H 0.156 0.844 34 H 0.275 0.725 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.190 0.810 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 -6.307 -5.315 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.879 5.879 3 S 2.790 3.210 4 O -0.945 6.945 5 O -0.942 6.942 6 C -0.816 4.816 7 C 0.019 3.981 8 C -0.127 4.127 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.144 5.144 12 C -0.475 4.475 13 H 0.108 0.892 14 C -0.163 4.163 15 N -0.481 5.481 16 Si 0.736 3.264 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.193 1.193 20 C 0.065 3.935 21 C -0.146 4.146 22 C -0.163 4.163 23 C -0.150 4.150 24 C -0.169 4.169 25 C -0.015 4.015 26 C -0.209 4.209 27 C 0.164 3.836 28 F -0.107 7.107 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.252 0.748 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.207 0.793 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.568 -5.616 -6.037 8.984 hybrid contribution -1.415 -0.466 1.156 1.885 sum -4.983 -6.081 -4.881 9.254 Atomic orbital electron populations 1.21795 0.78382 1.03961 1.02896 1.55301 1.16261 1.24317 1.92057 1.01697 0.72805 0.72806 0.73703 1.93598 1.30551 1.83318 1.87029 1.93596 1.78673 1.68243 1.53681 1.30563 0.99717 1.25346 1.25960 1.20937 0.97954 0.89287 0.89945 1.20447 0.95320 1.01268 0.95694 1.18016 0.87385 0.82448 0.82473 1.90649 1.19406 1.56860 1.79749 1.43396 1.09188 1.56806 1.05016 1.19432 0.90530 1.07077 1.30419 0.89168 1.25532 0.99240 0.93816 0.97696 1.69869 1.39744 1.08570 1.29912 0.86242 0.81868 0.78567 0.79701 1.19533 1.20481 1.19253 1.21398 0.86230 0.91457 0.94382 1.22473 0.92923 0.98158 1.01038 1.22475 0.97489 0.96695 0.99624 1.22212 0.96401 0.94820 1.01548 1.22482 0.95524 0.99507 0.99368 1.23119 0.90464 0.89104 0.98818 1.21344 1.02037 1.04282 0.93193 1.17260 0.83209 0.95947 0.87204 1.91506 1.60990 1.91992 1.66184 0.91347 0.91236 0.90237 0.74760 0.82624 0.91414 0.88881 0.92437 0.90714 0.92708 0.92886 0.93752 0.90826 0.93700 0.91109 0.79315 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 9.91 59.85 0.59 1.29 16 2 N -1.12 -11.88 6.19 -16.63 -0.10 -11.99 16 3 S 2.70 39.89 5.48 -107.50 -0.59 39.30 16 4 O -0.95 -16.17 16.96 -57.17 -0.97 -17.14 16 5 O -0.95 -16.29 17.14 -57.17 -0.98 -17.27 16 6 C -0.73 -11.88 5.89 -39.58 -0.23 -12.11 16 7 C 0.04 0.72 9.08 -39.18 -0.36 0.37 16 8 C -0.12 -2.47 5.64 -104.96 -0.59 -3.06 16 9 C 0.51 11.45 6.25 -12.44 -0.08 11.38 16 10 O -0.58 -13.91 12.53 5.27 0.07 -13.84 16 11 N -0.43 -9.59 2.49 -107.69 -0.27 -9.86 16 12 C -0.35 -7.58 5.80 -15.00 -0.09 -7.66 16 13 H 0.09 1.91 6.92 -52.49 -0.36 1.55 16 14 C 0.05 0.99 4.65 -17.45 -0.08 0.91 16 15 N -0.85 -19.12 10.43 55.50 0.58 -18.54 16 16 Si 0.91 16.83 29.56 -169.99 -5.03 11.80 16 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 20 C 0.17 3.65 2.27 -66.82 -0.15 3.50 16 21 C -0.11 -2.25 5.79 -25.03 -0.14 -2.39 16 22 C -0.12 -2.23 6.91 -24.70 -0.17 -2.40 16 23 C -0.11 -2.06 6.44 -25.07 -0.16 -2.22 16 24 C -0.13 -2.60 5.71 -25.62 -0.15 -2.75 16 25 C 0.00 0.05 8.09 -39.18 -0.32 -0.26 16 26 C -0.19 -2.97 10.01 -39.57 -0.40 -3.36 16 27 C 0.18 2.89 6.67 -39.26 -0.26 2.62 16 28 F -0.13 -1.80 12.91 2.25 0.03 -1.77 16 29 H 0.07 0.66 5.39 -51.93 -0.28 0.38 16 30 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.42 3.39 8.96 -34.46 -0.31 3.08 16 33 H 0.16 2.89 7.05 -52.48 -0.37 2.52 16 34 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 35 H 0.09 2.13 6.63 -51.93 -0.34 1.79 16 36 H 0.06 1.32 6.93 -51.93 -0.36 0.96 16 37 H 0.07 1.61 7.36 -51.93 -0.38 1.22 16 38 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.48 7.16 -51.93 -0.37 1.11 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.54 6.40 -51.93 -0.33 1.21 16 44 H 0.19 3.68 4.75 -52.49 -0.25 3.43 16 45 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -27.90 366.84 -9.77 -37.67 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.45 Total: 12.29 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.58 Total: -16.17 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.21 Total: -40.39 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.88 Total: -48.25 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 39.89 SS G_CDS: -0.59 Total: 39.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.90 -9.77 -37.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079053580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.041 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds