Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99879 * 2 1 4 4 C 1.53001 * 109.46971 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46940 * 65.00101 * 4 3 2 6 6 C 1.39679 * 119.99707 * 179.97438 * 5 4 3 7 7 C 1.38934 * 120.07197 * 0.02562 * 6 5 4 8 8 C 1.38086 * 119.92468 * 179.97438 * 7 6 5 9 9 C 1.38311 * 120.07067 * 0.02562 * 8 7 6 10 10 C 1.38260 * 120.14978 * 359.97438 * 9 8 7 11 11 C 1.38125 * 120.07838 * 359.74725 * 10 9 8 12 12 C 1.50700 * 120.04003 * 180.27213 * 11 10 9 13 13 N 1.46501 * 109.47100 * 260.25644 * 12 11 10 14 14 C 1.34777 * 119.99626 * 180.02562 * 13 12 11 15 15 O 1.21579 * 120.00238 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99522 * 179.97438 * 14 13 12 17 17 C 1.39242 * 119.99832 * 175.71017 * 16 14 13 18 18 C 1.39481 * 119.83482 * 215.02000 * 17 16 14 19 19 C 1.36372 * 120.16830 * 179.76200 * 18 17 16 20 20 C 1.40872 * 119.82916 * 0.53477 * 19 18 17 21 21 C 1.41158 * 120.16253 * 179.69873 * 20 19 18 22 22 H 1.08004 * 119.99385 * 214.80807 * 21 20 19 23 23 C 1.39894 * 120.00322 * 34.80618 * 21 20 19 24 24 N 1.30882 * 119.99769 * 355.55930 * 23 21 20 25 25 Si 1.86794 * 120.00018 * 175.55402 * 23 21 20 26 26 H 1.48500 * 109.47312 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46905 * 120.00230 * 25 23 21 28 28 H 1.48493 * 109.47391 * 240.00094 * 25 23 21 29 29 C 1.40866 * 119.66850 * 359.72302 * 20 19 18 30 30 C 1.36371 * 119.83167 * 359.97438 * 29 20 19 31 31 H 1.09001 * 109.47267 * 299.99949 * 1 2 3 32 32 H 1.08998 * 109.46958 * 60.00315 * 1 2 3 33 33 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46895 * 59.99765 * 3 2 1 35 35 H 1.08999 * 109.46841 * 299.99766 * 3 2 1 36 36 H 1.09000 * 109.46734 * 184.99863 * 4 3 2 37 37 H 1.08997 * 109.47068 * 304.99749 * 4 3 2 38 38 H 0.96990 * 120.00111 * 0.02562 * 5 4 3 39 39 H 1.08002 * 120.04103 * 359.95126 * 7 6 5 40 40 H 1.07998 * 119.96628 * 180.02562 * 8 7 6 41 41 H 1.08003 * 119.91882 * 179.97438 * 9 8 7 42 42 H 1.08004 * 119.96040 * 180.02562 * 10 9 8 43 43 H 1.08997 * 109.47022 * 20.25456 * 12 11 10 44 44 H 1.09005 * 109.46900 * 140.25429 * 12 11 10 45 45 H 0.96997 * 119.99665 * 359.97438 * 13 12 11 46 46 H 0.97002 * 120.00554 * 355.71376 * 16 14 13 47 47 H 1.07995 * 119.91560 * 0.02562 * 18 17 16 48 48 H 1.08000 * 120.08669 * 180.25425 * 19 18 17 49 49 H 0.97000 * 119.99775 * 179.97438 * 24 23 21 50 50 H 1.08004 * 120.08320 * 179.97438 * 29 20 19 51 51 H 1.07995 * 119.91439 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 5.3360 0.3490 -1.4849 7 6 6.2729 0.7219 -0.5291 8 6 7.6170 0.5070 -0.7615 9 6 8.0309 -0.0782 -1.9444 10 6 7.1011 -0.4504 -2.8976 11 6 5.7547 -0.2436 -2.6691 12 6 4.7416 -0.6552 -3.7060 13 7 4.3319 0.5184 -4.4813 14 6 3.4262 0.3895 -5.4711 15 8 2.9488 -0.7005 -5.7201 16 7 3.0489 1.4693 -6.1839 17 6 2.1818 1.3225 -7.2635 18 6 2.3283 2.1363 -8.3868 19 6 1.4859 1.9951 -9.4499 20 6 0.4587 1.0320 -9.4070 21 6 -0.4211 0.8842 -10.5008 22 1 -1.4563 0.6278 -10.3302 23 6 0.0477 1.0698 -11.8057 24 7 1.2787 1.4651 -12.0087 25 14 -1.0833 0.7534 -13.2583 26 1 -2.4144 0.3187 -12.7639 27 1 -1.2330 2.0009 -14.0500 28 1 -0.5018 -0.3102 -14.1159 29 6 0.3138 0.2176 -8.2668 30 6 1.1677 0.3662 -7.2139 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.9785 2.1766 0.0889 37 1 3.8514 0.5683 0.8409 38 1 3.3225 0.3041 -1.9208 39 1 5.9504 1.1796 0.3944 40 1 8.3459 0.7962 -0.0189 41 1 9.0829 -0.2447 -2.1238 42 1 7.4277 -0.9075 -3.8201 43 1 5.1844 -1.3948 -4.3731 44 1 3.8708 -1.0865 -3.2121 45 1 4.7120 1.3882 -4.2818 46 1 3.3814 2.3487 -5.9451 47 1 3.1135 2.8771 -8.4165 48 1 1.6032 2.6230 -10.3207 49 1 1.6039 1.5935 -12.9135 50 1 -0.4717 -0.5226 -8.2265 51 1 1.0575 -0.2571 -6.3390 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079111791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -20.145502 kcal Electronic energy + Delta-G solvation = -32165.933486 eV Core-core repulsion = 27837.072329 eV Total energy + Delta-G solvation = -4328.861157 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.27091 -39.53524 -38.37215 -37.38802 -35.72042 -34.91857 -34.21859 -32.88274 -31.44148 -30.97237 -29.52279 -28.79966 -28.20681 -26.56461 -26.12212 -24.54505 -23.62645 -21.77181 -21.46208 -21.22710 -20.79250 -20.02508 -18.11062 -17.64337 -17.20588 -17.04857 -16.76655 -16.63836 -15.97831 -15.37279 -15.30556 -15.10708 -14.86950 -14.80415 -14.27502 -14.20936 -14.02209 -13.87194 -13.81020 -13.22145 -13.02826 -12.73971 -12.65154 -12.54558 -12.48795 -12.09649 -12.06118 -11.66684 -11.62368 -11.42779 -11.31618 -11.12415 -11.06895 -10.92596 -10.68932 -10.34690 -10.11089 -10.04969 -9.51439 -9.41432 -9.23251 -9.02163 -8.86697 -8.79248 -7.61356 -7.48699 -6.77765 -6.56445 -4.28551 1.14514 1.44488 2.71236 3.09835 3.12052 3.12677 3.13317 3.18273 3.22108 3.35463 3.74148 3.78376 4.02241 4.45380 4.58214 4.65402 4.72944 4.74251 4.76208 4.85726 4.92142 5.00532 5.04706 5.13304 5.18769 5.25939 5.34286 5.39998 5.50120 5.56888 5.69675 5.74238 5.88975 6.10502 6.24354 6.33463 6.45760 6.48606 6.63524 6.65086 6.71149 6.82183 6.89061 7.09713 7.11256 7.21498 7.32647 7.47150 7.48125 7.70637 7.92225 8.03074 8.15193 8.36392 8.53372 8.69455 8.98469 8.98843 9.15790 10.34884 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.001917 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.233565 B =14602.680073 C =16356.033418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.128 3.872 5 N -0.739 5.739 6 C 0.236 3.764 7 C -0.204 4.204 8 C -0.066 4.066 9 C -0.185 4.185 10 C -0.050 4.050 11 C -0.183 4.183 12 C 0.190 3.810 13 N -0.749 5.749 14 C 0.693 3.307 15 O -0.578 6.578 16 N -0.668 5.668 17 C 0.026 3.974 18 C -0.124 4.124 19 C -0.140 4.140 20 C 0.097 3.903 21 C -0.461 4.461 22 H 0.075 0.925 23 C 0.069 3.931 24 N -0.814 5.814 25 Si 0.914 3.086 26 H -0.263 1.263 27 H -0.275 1.275 28 H -0.275 1.275 29 C -0.204 4.204 30 C -0.087 4.087 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.407 0.593 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.392 0.608 46 H 0.391 0.609 47 H 0.090 0.910 48 H 0.132 0.868 49 H 0.276 0.724 50 H 0.095 0.905 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.821 2.911 24.379 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.030 4.030 4 C 0.003 3.997 5 N -0.370 5.370 6 C 0.131 3.869 7 C -0.227 4.227 8 C -0.085 4.085 9 C -0.205 4.205 10 C -0.069 4.069 11 C -0.188 4.188 12 C 0.066 3.934 13 N -0.406 5.406 14 C 0.394 3.606 15 O -0.455 6.455 16 N -0.314 5.314 17 C -0.067 4.067 18 C -0.145 4.145 19 C -0.160 4.160 20 C 0.094 3.906 21 C -0.493 4.493 22 H 0.093 0.907 23 C -0.146 4.146 24 N -0.441 5.441 25 Si 0.739 3.261 26 H -0.186 1.186 27 H -0.201 1.201 28 H -0.200 1.200 29 C -0.224 4.224 30 C -0.107 4.107 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.244 0.756 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.225 0.775 46 H 0.224 0.776 47 H 0.108 0.892 48 H 0.149 0.851 49 H 0.087 0.913 50 H 0.113 0.887 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.568 1.850 24.146 25.688 hybrid contribution -0.373 0.793 -0.716 1.132 sum 8.195 2.643 23.430 24.962 Atomic orbital electron populations 1.22787 0.80455 1.03207 1.00144 1.87935 1.20166 1.27105 1.95445 1.22781 0.93111 0.85761 1.01386 1.21361 0.92354 0.98222 0.87739 1.44753 1.04078 1.67677 1.20447 1.17666 0.84124 0.92365 0.92734 1.20589 0.92813 1.09310 0.99988 1.20908 0.94954 0.95981 0.96611 1.20881 0.99327 1.05004 0.95254 1.20887 0.91508 0.96120 0.98430 1.19379 0.94779 1.08879 0.95765 1.19723 0.95487 0.87467 0.90751 1.45280 1.46563 1.11441 1.37345 1.16059 0.79924 0.84857 0.79744 1.90914 1.58713 1.25610 1.70230 1.42127 1.49446 1.07842 1.31975 1.17078 0.95397 1.05798 0.88410 1.20296 1.00361 1.00736 0.93092 1.21174 0.97860 0.99835 0.97159 1.17720 0.92403 0.88944 0.91524 1.19504 0.97308 1.42123 0.90325 0.90670 1.25865 0.95331 0.92875 1.00508 1.69778 1.15450 1.35957 1.22964 0.86164 0.80839 0.78557 0.80491 1.18644 1.20081 1.20039 1.20807 1.02516 1.02445 0.96629 1.20414 0.93624 0.97894 0.98782 0.94033 0.93653 0.89337 0.91691 0.92401 0.90723 0.91344 0.75594 0.86276 0.86344 0.86413 0.85904 0.90893 0.91610 0.77452 0.77642 0.89208 0.85073 0.91306 0.88689 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.76 10.65 -35.23 -0.38 -4.13 16 3 C 0.05 0.33 6.07 37.16 0.23 0.56 16 4 C 0.13 0.90 5.30 -4.04 -0.02 0.88 16 5 N -0.74 -6.83 5.59 -58.63 -0.33 -7.16 16 6 C 0.24 2.32 6.63 -83.79 -0.56 1.76 16 7 C -0.20 -1.77 9.31 -39.38 -0.37 -2.14 16 8 C -0.07 -0.54 10.04 -39.61 -0.40 -0.93 16 9 C -0.18 -1.60 10.04 -39.55 -0.40 -2.00 16 10 C -0.05 -0.49 9.66 -39.61 -0.38 -0.87 16 11 C -0.18 -1.92 5.27 -104.42 -0.55 -2.47 16 12 C 0.19 2.35 5.09 -5.19 -0.03 2.33 16 13 N -0.75 -9.78 5.55 -66.41 -0.37 -10.14 16 14 C 0.69 12.47 8.40 -86.92 -0.73 11.74 16 15 O -0.58 -12.96 13.76 5.30 0.07 -12.89 16 16 N -0.67 -11.94 5.31 -14.10 -0.07 -12.02 16 17 C 0.03 0.58 6.31 -83.57 -0.53 0.06 16 18 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16 19 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 20 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 21 C -0.46 -12.51 9.02 -37.85 -0.34 -12.85 16 22 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 23 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 24 N -0.81 -21.53 10.60 55.55 0.59 -20.94 16 25 Si 0.91 19.33 29.56 -169.99 -5.03 14.31 16 26 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 29 C -0.20 -5.26 9.74 -39.26 -0.38 -5.65 16 30 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.41 7.95 -51.93 -0.41 0.00 16 37 H 0.07 0.48 7.95 -51.93 -0.41 0.07 16 38 H 0.41 4.36 6.71 -40.82 -0.27 4.09 16 39 H 0.12 0.84 6.74 -52.49 -0.35 0.48 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 42 H 0.12 1.10 8.04 -52.48 -0.42 0.67 16 43 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 44 H 0.07 0.88 7.10 -51.93 -0.37 0.51 16 45 H 0.39 4.23 8.48 -40.82 -0.35 3.88 16 46 H 0.39 5.51 8.83 -40.82 -0.36 5.15 16 47 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 48 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 49 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 50 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 51 H 0.11 2.63 6.22 -52.49 -0.33 2.31 16 LS Contribution 423.56 15.07 6.38 6.38 Total: -1.00 -32.32 423.56 -11.59 -43.91 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -7.37 Total: 16.94 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -5.10 Total: -14.26 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.18 Total: -50.26 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.30 Total: -17.02 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.32 -11.59 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079111791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.767 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds