Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33356 * 117.94822 * 2 1 4 4 O 1.21280 * 118.24322 * 2.19572 * 3 2 1 5 5 C 1.50175 * 123.50911 * 182.22082 * 3 2 1 6 6 C 1.53067 * 109.89106 * 342.41597 * 5 3 2 7 7 C 1.53338 * 108.42521 * 48.89861 * 6 5 3 8 8 H 1.09003 * 109.60398 * 172.71213 * 7 6 5 9 9 C 1.50700 * 109.60436 * 52.39283 * 7 6 5 10 10 O 1.21292 * 119.99713 * 269.73321 * 9 7 6 11 11 N 1.34776 * 120.00194 * 89.73524 * 9 7 6 12 12 C 1.37097 * 119.99855 * 180.02562 * 11 9 7 13 13 H 1.07999 * 119.99932 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99939 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99931 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00024 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47147 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46810 * 119.99693 * 16 14 12 19 19 H 1.48500 * 109.46834 * 239.99654 * 16 14 12 20 20 C 1.45750 * 117.94692 * 179.97438 * 2 1 3 21 21 H 1.09009 * 109.30109 * 281.24016 * 20 2 1 22 22 C 1.50700 * 109.30184 * 40.61276 * 20 2 1 23 23 C 1.38228 * 120.00033 * 304.53834 * 22 20 2 24 24 C 1.38237 * 119.99920 * 179.76547 * 23 22 20 25 25 C 1.38235 * 120.00031 * 0.48256 * 24 23 22 26 26 C 1.50697 * 120.00367 * 179.77024 * 25 24 23 27 27 F 1.39893 * 109.47113 * 270.02099 * 26 25 24 28 28 F 1.39902 * 109.46832 * 30.01938 * 26 25 24 29 29 F 1.39905 * 109.47362 * 150.01760 * 26 25 24 30 30 C 1.38239 * 119.99584 * 359.79017 * 25 24 23 31 31 C 1.38230 * 120.00309 * 359.95759 * 30 25 24 32 32 H 1.09005 * 109.47142 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.47286 * 120.00054 * 1 2 3 34 34 H 1.09003 * 109.47664 * 240.00592 * 1 2 3 35 35 H 1.09003 * 109.39844 * 222.28894 * 5 3 2 36 36 H 1.08993 * 109.39978 * 102.54436 * 5 3 2 37 37 H 1.09006 * 109.67095 * 289.16352 * 6 5 3 38 38 H 1.08997 * 109.70102 * 168.65749 * 6 5 3 39 39 H 0.96991 * 120.00002 * 359.97438 * 11 9 7 40 40 H 0.96996 * 120.00035 * 180.02562 * 15 14 12 41 41 H 1.08002 * 120.00405 * 359.97438 * 23 22 20 42 42 H 1.08006 * 119.99984 * 180.25096 * 24 23 22 43 43 H 1.08009 * 119.99783 * 179.97438 * 30 25 24 44 44 H 1.08000 * 120.00246 * 179.97438 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4158 2.1854 0.0409 5 6 3.5838 1.3240 -0.0485 6 6 4.2492 0.0013 0.3398 7 6 3.5948 -1.1259 -0.4679 8 1 4.1383 -2.0564 -0.3040 9 6 3.6196 -0.7776 -1.9339 10 8 2.6941 -0.1691 -2.4283 11 7 4.6700 -1.1423 -2.6956 12 6 4.6926 -0.8250 -4.0291 13 1 3.8686 -0.2831 -4.4693 14 6 5.7753 -1.2014 -4.8145 15 7 6.7777 -1.8611 -4.2789 16 14 5.8059 -0.7696 -6.6317 17 1 4.5673 -0.0310 -6.9859 18 1 6.9891 0.0807 -6.9185 19 1 5.8854 -2.0159 -7.4353 20 6 2.1480 -1.2875 0.0006 21 1 2.1397 -1.6994 1.0098 22 6 1.4277 -2.2340 -0.9248 23 6 0.0796 -2.4826 -0.7468 24 6 -0.5822 -3.3470 -1.5987 25 6 0.1063 -3.9706 -2.6224 26 6 -0.6140 -4.9169 -3.5479 27 9 -0.5508 -6.2147 -3.0293 28 9 -1.9522 -4.5262 -3.6652 29 9 -0.0077 -4.8884 -4.8084 30 6 1.4557 -3.7262 -2.7969 31 6 2.1163 -2.8578 -1.9483 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3634 -0.5139 -0.8900 34 1 -0.3634 -0.5137 0.8900 35 1 3.8942 2.1035 0.6473 36 1 3.8880 1.5996 -1.0582 37 1 4.1086 -0.1812 1.4052 38 1 5.3143 0.0452 0.1125 39 1 5.4101 -1.6286 -2.3001 40 1 7.5337 -2.1236 -4.8271 41 1 -0.4574 -1.9989 0.0558 42 1 -1.6364 -3.5381 -1.4620 43 1 1.9937 -4.2137 -3.5966 44 1 3.1706 -2.6673 -2.0844 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083877227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -165.460463 kcal Electronic energy + Delta-G solvation = -35713.715936 eV Core-core repulsion = 30603.144952 eV Total energy + Delta-G solvation = -5110.570983 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11588 -47.62914 -47.58124 -41.30930 -39.06523 -38.33871 -36.02740 -34.21617 -33.90171 -32.32030 -31.34307 -31.06996 -29.23119 -27.26060 -26.27806 -25.19054 -23.75111 -22.96878 -22.16851 -21.21074 -20.02554 -18.48923 -18.43569 -18.33031 -18.30311 -17.59213 -16.70137 -16.45311 -16.19983 -15.51202 -15.29152 -14.96270 -14.78080 -14.57343 -14.40358 -14.35413 -14.23900 -14.03360 -13.95449 -13.80860 -13.73941 -13.49816 -13.37486 -13.12637 -12.75419 -12.64320 -12.59944 -12.33343 -12.08525 -11.84767 -11.65277 -11.50797 -11.25230 -11.16599 -10.96191 -10.76851 -10.67012 -10.43369 -10.34330 -9.67533 -9.40181 -8.96561 -8.88052 -8.61522 -8.28529 -8.11551 -6.55685 -3.96840 0.95545 1.39527 2.71352 2.98109 3.07756 3.20897 3.25085 3.27451 3.64559 3.67238 3.77414 4.03711 4.08725 4.45939 4.49470 4.54184 4.62056 4.80455 4.90095 4.95666 5.01996 5.15193 5.24638 5.29455 5.34607 5.47046 5.59252 5.62861 5.69859 5.76295 5.80488 5.91734 5.98256 5.99400 6.08129 6.11769 6.19374 6.28927 6.34901 6.54683 6.61627 6.85009 7.43444 7.72588 7.88819 8.42195 8.50826 9.03219 9.34518 9.84488 10.61096 Molecular weight = 370.13amu Principal moments of inertia in cm(-1) A = 0.006683 B = 0.005031 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4188.716372 B = 5564.384360 C = 8719.473154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.581 5.581 3 C 0.543 3.457 4 O -0.567 6.567 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.125 4.125 8 H 0.101 0.899 9 C 0.443 3.557 10 O -0.573 6.573 11 N -0.560 5.560 12 C -0.300 4.300 13 H 0.104 0.896 14 C 0.028 3.972 15 N -0.897 5.897 16 Si 0.925 3.075 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.207 3.793 21 H 0.089 0.911 22 C -0.057 4.057 23 C -0.123 4.123 24 C -0.082 4.082 25 C -0.185 4.185 26 C 0.509 3.491 27 F -0.180 7.180 28 F -0.180 7.180 29 F -0.176 7.176 30 C -0.065 4.065 31 C -0.089 4.089 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.392 0.608 40 H 0.273 0.727 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -6.189 10.335 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.312 5.312 3 C 0.333 3.667 4 O -0.447 6.447 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.148 4.148 8 H 0.119 0.881 9 C 0.229 3.771 10 O -0.457 6.457 11 N -0.196 5.196 12 C -0.429 4.429 13 H 0.122 0.878 14 C -0.175 4.175 15 N -0.537 5.537 16 Si 0.752 3.248 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.206 1.206 20 C 0.103 3.897 21 H 0.107 0.893 22 C -0.058 4.058 23 C -0.141 4.141 24 C -0.100 4.100 25 C -0.186 4.186 26 C 0.455 3.545 27 F -0.162 7.162 28 F -0.162 7.162 29 F -0.157 7.157 30 C -0.083 4.083 31 C -0.108 4.108 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.160 0.840 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.811 -5.332 9.895 14.282 hybrid contribution 0.541 -0.455 -1.186 1.380 sum -8.270 -5.787 8.709 13.332 Atomic orbital electron populations 1.22188 0.80720 1.04534 1.00644 1.46768 1.06760 1.04963 1.72698 1.19842 0.90725 0.82256 0.73883 1.90634 1.66541 1.35722 1.51824 1.21621 0.91337 0.98918 1.05453 1.21578 1.00790 0.92998 0.99297 1.21790 0.95274 1.01083 0.96629 0.88085 1.19347 0.85196 0.85783 0.86796 1.90639 1.36793 1.44785 1.73488 1.42013 1.18174 1.50139 1.09323 1.19717 1.05422 1.34248 0.83536 0.87820 1.25230 0.95168 0.96583 1.00496 1.69597 1.08508 1.38458 1.37161 0.85866 0.78524 0.78333 0.82106 1.19200 1.20664 1.20638 1.19569 0.90460 0.82526 0.97129 0.89300 1.20087 0.94258 0.95433 0.96015 1.21390 0.94150 0.97873 1.00687 1.20765 0.99844 0.95622 0.93745 1.19943 0.95933 1.02884 0.99888 1.18367 0.76899 0.79677 0.79599 1.93203 1.96180 1.40094 1.86682 1.93169 1.36007 1.90826 1.96183 1.93209 1.83040 1.96456 1.42990 1.20944 0.92183 0.96643 0.98510 1.21582 1.02232 0.94263 0.92693 0.89345 0.91031 0.92533 0.88712 0.87382 0.90721 0.89726 0.77420 0.91752 0.83984 0.85054 0.84694 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 8.53 59.84 0.51 1.35 16 2 N -0.58 -8.97 2.47 -176.50 -0.44 -9.41 16 3 C 0.54 9.66 6.39 -11.87 -0.08 9.58 16 4 O -0.57 -11.84 15.95 5.56 0.09 -11.75 16 5 C -0.13 -2.06 5.41 -28.10 -0.15 -2.22 16 6 C -0.11 -1.36 5.66 -26.52 -0.15 -1.51 16 7 C -0.13 -1.80 2.09 -91.63 -0.19 -1.99 16 8 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16 9 C 0.44 8.68 2.65 -10.99 -0.03 8.65 16 10 O -0.57 -13.40 12.73 5.55 0.07 -13.33 16 11 N -0.56 -12.17 4.64 -10.96 -0.05 -12.22 16 12 C -0.30 -7.55 9.68 -14.93 -0.14 -7.69 16 13 H 0.10 2.83 7.16 -52.49 -0.38 2.46 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.90 -22.48 13.05 55.50 0.72 -21.76 16 16 Si 0.92 20.13 29.55 -169.99 -5.02 15.11 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.21 2.79 2.77 -69.52 -0.19 2.60 16 21 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 22 C -0.06 -0.82 4.68 -104.63 -0.49 -1.31 16 23 C -0.12 -1.52 7.10 -39.59 -0.28 -1.80 16 24 C -0.08 -1.02 9.40 -39.58 -0.37 -1.39 16 25 C -0.18 -2.63 5.45 -104.62 -0.57 -3.20 16 26 C 0.51 6.96 3.36 36.00 0.12 7.08 16 27 F -0.18 -2.39 17.30 2.25 0.04 -2.35 16 28 F -0.18 -2.39 16.46 2.25 0.04 -2.36 16 29 F -0.18 -2.62 16.46 2.25 0.04 -2.58 16 30 C -0.06 -1.01 9.40 -39.58 -0.37 -1.39 16 31 C -0.09 -1.45 7.67 -39.58 -0.30 -1.75 16 32 H 0.09 1.35 6.59 -51.93 -0.34 1.01 16 33 H 0.07 1.01 5.44 -51.93 -0.28 0.73 16 34 H 0.06 0.57 7.00 -51.93 -0.36 0.20 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.11 1.98 7.22 -51.93 -0.37 1.61 16 37 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.39 8.19 7.90 -40.82 -0.32 7.87 16 40 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 41 H 0.14 1.39 4.97 -52.49 -0.26 1.13 16 42 H 0.13 1.33 7.61 -52.48 -0.40 0.93 16 43 H 0.14 2.08 7.61 -52.48 -0.40 1.68 16 44 H 0.15 2.64 4.14 -52.49 -0.22 2.42 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -30.78 360.05 -6.45 -37.23 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.57 Total: 12.40 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -2.79 Total: 5.59 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.24 Total: -43.39 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.16 Total: -25.08 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.11 Total: -7.29 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.78 -6.45 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083877227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.232 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds