Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46502 * 119.99570 * 2 1 4 4 C 1.50704 * 109.47045 * 269.99693 * 3 2 1 5 5 H 1.08002 * 119.99606 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00022 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00432 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00037 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46716 * 60.00164 * 8 6 4 10 10 H 1.48502 * 109.47182 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47310 * 300.00360 * 8 6 4 12 12 C 1.34771 * 120.00192 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00178 * 180.02562 * 12 2 1 14 14 N 1.34781 * 120.00049 * 0.02562 * 12 2 1 15 15 C 1.40020 * 119.99772 * 185.29500 * 14 12 2 16 16 C 1.38884 * 120.00103 * 213.31016 * 15 14 12 17 17 C 1.38027 * 119.99060 * 180.02562 * 16 15 14 18 18 C 1.38836 * 120.00777 * 359.97438 * 17 16 15 19 19 N 1.40328 * 119.99618 * 180.02562 * 18 17 16 20 20 N 1.28727 * 125.94071 * 325.02634 * 19 18 17 21 21 N 1.28602 * 110.23642 * 179.97438 * 20 19 18 22 22 C 1.33760 * 109.06285 * 359.73047 * 21 20 19 23 23 C 1.35396 * 106.53012 * 0.42370 * 22 21 20 24 24 C 1.50704 * 126.97050 * 179.84849 * 23 22 21 25 25 F 1.39900 * 109.47076 * 269.68956 * 24 23 22 26 26 F 1.39899 * 109.46596 * 149.69103 * 24 23 22 27 27 F 1.39895 * 109.47070 * 29.68725 * 24 23 22 28 28 C 1.38836 * 120.01095 * 0.27565 * 18 17 16 29 29 C 1.38035 * 120.00279 * 359.49209 * 28 18 17 30 30 H 1.08998 * 109.46947 * 269.99908 * 1 2 3 31 31 H 1.08996 * 109.47224 * 30.00466 * 1 2 3 32 32 H 1.08996 * 109.46518 * 150.00499 * 1 2 3 33 33 H 1.08995 * 109.47367 * 29.99835 * 3 2 1 34 34 H 1.08994 * 109.47032 * 149.99930 * 3 2 1 35 35 H 0.96992 * 120.00152 * 179.97438 * 7 6 4 36 36 H 0.97002 * 119.99919 * 5.29761 * 14 12 2 37 37 H 1.08002 * 120.00314 * 0.02562 * 16 15 14 38 38 H 1.08005 * 119.99273 * 180.02562 * 17 16 15 39 39 H 1.07997 * 126.73785 * 180.31217 * 22 21 20 40 40 H 1.08001 * 119.99886 * 179.72130 * 28 18 17 41 41 H 1.08005 * 120.00404 * 180.24839 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4388 3.4163 -3.4340 9 1 2.1414 3.5941 -4.1344 10 1 4.1811 4.7025 -3.4341 11 1 4.2412 2.3810 -4.1337 12 6 2.1390 -1.1671 0.0005 13 8 3.3549 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1608 -3.5443 0.1130 16 6 1.6903 -4.6788 -0.5355 17 6 2.3759 -5.8715 -0.4241 18 6 3.5361 -5.9371 0.3357 19 7 4.2333 -7.1497 0.4484 20 7 3.7060 -8.3233 0.4909 21 7 4.6226 -9.2192 0.5958 22 6 5.8183 -8.6203 0.6191 23 6 5.5844 -7.2896 0.5311 24 6 6.6122 -6.1874 0.5204 25 9 6.8580 -5.7663 1.8317 26 9 6.1331 -5.1105 -0.2331 27 9 7.7994 -6.6624 -0.0471 28 6 4.0037 -4.8045 0.9883 29 6 3.3211 -3.6103 0.8733 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5138 34 1 3.1498 1.1385 0.5138 35 1 4.0323 4.4427 -0.8505 36 1 0.4982 -2.3362 -0.0774 37 1 0.7880 -4.6277 -1.1269 38 1 2.0103 -6.7536 -0.9288 39 1 6.7814 -9.1031 0.6951 40 1 4.9038 -4.8568 1.5829 41 1 3.6871 -2.7282 1.3777 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085580803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -17.452836 kcal Electronic energy + Delta-G solvation = -33260.575714 eV Core-core repulsion = 28150.601141 eV Total energy + Delta-G solvation = -5109.974572 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.65952 -48.16711 -48.08509 -44.04103 -40.60084 -38.95644 -35.86688 -34.96660 -33.81358 -32.76050 -32.57643 -31.32221 -29.36926 -27.79896 -26.83478 -26.00185 -24.49022 -23.87105 -22.93274 -22.38218 -21.55300 -19.71206 -19.51015 -19.05740 -18.81627 -18.15029 -17.61884 -17.18416 -16.95257 -16.62395 -15.57742 -15.39731 -15.14690 -14.94198 -14.88786 -14.65328 -14.61146 -14.50650 -14.21541 -14.19684 -14.16869 -13.66767 -13.61702 -13.43658 -13.11592 -13.03882 -12.75355 -12.32778 -12.25678 -12.03616 -11.91383 -11.66885 -11.29429 -11.17033 -10.99986 -10.65646 -10.32415 -10.24837 -10.17141 -9.75455 -9.60020 -9.26386 -8.50915 -8.26772 -7.79979 -6.12318 -4.17679 0.16206 1.03099 1.20300 1.44069 1.87405 2.13887 2.87072 3.07843 3.20833 3.26956 3.32065 3.35365 3.43985 3.73478 3.83111 4.01360 4.21260 4.31412 4.40182 4.45071 4.51884 4.72500 4.91555 5.03679 5.21426 5.22130 5.31385 5.39947 5.47652 5.63690 5.70637 5.88983 5.95345 6.04859 6.16928 6.26691 6.58443 6.79688 7.18406 7.32357 7.47407 7.76586 7.83861 8.12149 8.33914 8.80825 8.99845 9.47879 10.95649 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.002411 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.023405 B =11610.798277 C =12800.734839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.259 3.741 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.695 3.305 13 O -0.562 6.562 14 N -0.694 5.694 15 C 0.218 3.782 16 C -0.146 4.146 17 C -0.055 4.055 18 C 0.050 3.950 19 N -0.190 5.190 20 N -0.041 5.041 21 N -0.266 5.266 22 C 0.028 3.972 23 C -0.130 4.130 24 C 0.550 3.450 25 F -0.164 7.164 26 F -0.157 7.157 27 F -0.158 7.158 28 C -0.073 4.073 29 C -0.105 4.105 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.406 0.594 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.208 0.792 40 H 0.131 0.869 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -21.074 4.122 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.140 3.860 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.397 3.603 13 O -0.437 6.437 14 N -0.343 5.343 15 C 0.119 3.881 16 C -0.168 4.168 17 C -0.076 4.076 18 C -0.040 4.040 19 N 0.020 4.980 20 N -0.019 5.019 21 N -0.128 5.128 22 C -0.131 4.131 23 C -0.261 4.261 24 C 0.493 3.507 25 F -0.145 7.145 26 F -0.138 7.138 27 F -0.139 7.139 28 C -0.094 4.094 29 C -0.127 4.127 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.244 0.756 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.224 0.776 40 H 0.149 0.851 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.086 -21.539 4.162 22.036 hybrid contribution 0.792 1.231 -1.105 1.835 sum -1.294 -20.307 3.057 20.577 Atomic orbital electron populations 1.21638 0.81414 1.02543 1.00657 1.47563 1.05921 1.06277 1.74467 1.19307 0.92414 0.76628 0.97665 1.21380 1.36965 1.06403 0.92216 0.92525 1.24918 0.95213 0.96320 0.97507 1.69909 1.38088 1.14418 1.30842 0.86552 0.78393 0.77894 0.84549 1.20251 1.21097 1.20136 1.15943 0.85621 0.80029 0.78751 1.90938 1.11134 1.85355 1.56298 1.43189 1.10429 1.03675 1.77028 1.17769 0.92727 0.85175 0.92423 1.20764 1.02874 0.91378 1.01813 1.20625 0.92214 0.98589 0.96153 1.17538 0.97504 0.81607 1.07377 1.44561 1.03307 1.07207 1.42911 1.78481 1.21521 0.85460 1.16462 1.75244 0.97192 1.23347 1.17049 1.23546 0.99672 0.88510 1.01346 1.22196 0.85894 0.97297 1.20743 1.16873 0.79387 0.79793 0.74664 1.93264 1.94479 1.90577 1.36182 1.93354 1.87506 1.56778 1.76191 1.93251 1.47649 1.88192 1.84820 1.20958 0.99775 0.90894 0.97807 1.21151 0.95133 0.97717 0.98663 0.93331 0.90038 0.93131 0.94536 0.93531 0.92532 0.75572 0.84015 0.84069 0.77562 0.85130 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.25 59.85 0.61 1.73 16 2 N -0.61 -11.81 2.86 -188.74 -0.54 -12.35 16 3 C 0.26 6.39 5.16 -5.19 -0.03 6.36 16 4 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.69 13.34 8.02 -86.92 -0.70 12.64 16 13 O -0.56 -13.14 13.60 5.29 0.07 -13.07 16 14 N -0.69 -9.55 5.22 -14.20 -0.07 -9.63 16 15 C 0.22 2.86 6.28 -83.64 -0.53 2.33 16 16 C -0.15 -1.50 9.96 -39.42 -0.39 -1.90 16 17 C -0.06 -0.58 9.70 -39.44 -0.38 -0.96 16 18 C 0.05 0.61 5.89 -83.52 -0.49 0.12 16 19 N -0.19 -2.29 3.51 -6.75 -0.02 -2.32 16 20 N -0.04 -0.51 12.84 60.35 0.78 0.26 16 21 N -0.27 -3.17 12.39 30.24 0.37 -2.80 16 22 C 0.03 0.27 11.70 -17.73 -0.21 0.06 16 23 C -0.13 -1.41 6.28 -81.72 -0.51 -1.92 16 24 C 0.55 5.85 2.78 36.01 0.10 5.95 16 25 F -0.16 -1.73 15.89 2.25 0.04 -1.69 16 26 F -0.16 -2.01 13.87 2.25 0.03 -1.98 16 27 F -0.16 -1.52 17.06 2.25 0.04 -1.48 16 28 C -0.07 -0.93 7.31 -39.43 -0.29 -1.21 16 29 C -0.11 -1.49 8.65 -39.42 -0.34 -1.83 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.05 0.52 6.29 -51.93 -0.33 0.19 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.41 4.13 6.51 -40.82 -0.27 3.87 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.14 1.25 8.03 -52.48 -0.42 0.83 16 39 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.56 5.14 -52.49 -0.27 1.29 16 41 H 0.16 2.52 6.41 -52.48 -0.34 2.19 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -33.18 364.50 -5.33 -38.51 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -3.66 Total: 1.55 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -3.57 Total: 8.22 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 1.25 Total: -51.88 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.18 -5.33 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085580803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.061 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds