Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36780 * 119.99742 * 2 1 4 4 H 1.07997 * 120.00408 * 213.43679 * 3 2 1 5 5 C 1.39124 * 119.99970 * 33.44174 * 3 2 1 6 6 N 1.31314 * 119.99680 * 5.75069 * 5 3 2 7 7 Si 1.86797 * 119.99738 * 185.75020 * 5 3 2 8 8 H 1.48494 * 109.47409 * 60.00373 * 7 5 3 9 9 H 1.48503 * 109.46782 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47447 * 299.99640 * 7 5 3 11 11 C 1.34775 * 120.00097 * 180.02562 * 2 1 3 12 12 O 1.21553 * 119.99634 * 183.80314 * 11 2 1 13 13 C 1.48159 * 120.00030 * 3.79685 * 11 2 1 14 14 C 1.42334 * 126.94747 * 173.72053 * 13 11 2 15 15 C 1.35287 * 103.92426 * 179.89100 * 14 13 11 16 16 C 1.50706 * 126.65205 * 180.11823 * 15 14 13 17 17 O 1.42898 * 109.46489 * 90.28042 * 16 15 14 18 18 C 1.35961 * 116.99454 * 179.97438 * 17 16 15 19 19 C 1.38786 * 120.05894 * 269.72613 * 18 17 16 20 20 Cl 1.73594 * 120.03816 * 359.97438 * 19 18 17 21 21 C 1.38268 * 119.93111 * 179.72603 * 19 18 17 22 22 C 1.38262 * 120.06265 * 0.54863 * 21 19 18 23 23 C 1.38253 * 120.12591 * 359.72650 * 22 21 19 24 24 C 1.38265 * 120.06868 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 120.03879 * 179.97438 * 24 23 22 26 26 O 1.34029 * 106.68910 * 0.37166 * 15 14 13 27 27 N 1.20898 * 111.86569 * 359.75104 * 26 15 14 28 28 H 1.09000 * 109.46790 * 264.51767 * 1 2 3 29 29 H 1.08995 * 109.47001 * 24.52156 * 1 2 3 30 30 H 1.09003 * 109.46675 * 144.51760 * 1 2 3 31 31 H 0.97001 * 119.99991 * 180.02562 * 6 5 3 32 32 H 1.08001 * 128.03865 * 0.02648 * 14 13 11 33 33 H 1.08998 * 109.46403 * 210.27789 * 16 15 14 34 34 H 1.08991 * 109.46854 * 330.28156 * 16 15 14 35 35 H 1.08003 * 119.97198 * 180.30077 * 21 19 18 36 36 H 1.08004 * 119.93583 * 179.74779 * 22 21 19 37 37 H 1.08002 * 119.97054 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.0948 1.2621 -0.5153 5 6 1.6260 2.2897 0.6640 6 7 0.5348 2.1671 1.3842 7 14 2.4761 3.9476 0.5309 8 1 2.5168 4.3703 -0.8920 9 1 1.7262 4.9535 1.3253 10 1 3.8613 3.8371 1.0544 11 6 2.1390 -1.1672 -0.0005 12 8 3.3525 -1.1683 0.0693 13 6 1.4006 -2.4488 -0.0861 14 6 1.9596 -3.7507 -0.2224 15 6 0.8809 -4.5667 -0.2514 16 6 0.8918 -6.0681 -0.3811 17 8 0.9401 -6.6581 0.9196 18 6 0.9552 -8.0162 0.9810 19 6 -0.2373 -8.7220 1.0574 20 17 -1.7507 -7.8718 1.0753 21 6 -0.2190 -10.1034 1.1140 22 6 0.9862 -10.7810 1.1061 23 6 2.1758 -10.0802 1.0358 24 6 2.1635 -8.6991 0.9727 25 17 3.6578 -7.8198 0.8852 26 8 -0.1995 -3.7803 -0.1480 27 7 0.1005 -2.6127 -0.0574 28 1 -0.3633 -0.0982 1.0230 29 1 -0.3633 0.9349 -0.4265 30 1 -0.3633 -0.8369 -0.5965 31 1 0.1700 2.9377 1.8468 32 1 3.0025 -4.0239 -0.2856 33 1 -0.0121 -6.3949 -0.8950 34 1 1.7668 -6.3770 -0.9528 35 1 -1.1468 -10.6535 1.1686 36 1 0.9982 -11.8599 1.1545 37 1 3.1158 -10.6121 1.0302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089335307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = 31.727830 kcal Electronic energy + Delta-G solvation = -27507.534663 eV Core-core repulsion = 23113.981272 eV Total energy + Delta-G solvation = -4393.553391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.032 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.57939 -40.53463 -38.32110 -38.01985 -37.11032 -36.61957 -34.77228 -33.50603 -32.75229 -31.51727 -31.18632 -30.30023 -27.04318 -26.36433 -25.22610 -23.47235 -23.20032 -23.03818 -21.90052 -19.21830 -18.78962 -17.46840 -17.26089 -17.06010 -16.98598 -16.79691 -16.21245 -15.38678 -15.04493 -14.85054 -14.83100 -14.55828 -14.06844 -13.87517 -13.76530 -13.40211 -13.02386 -12.71727 -12.59978 -12.51347 -12.26598 -11.87890 -11.71482 -11.51038 -11.43576 -11.34269 -11.30606 -11.03690 -10.68303 -10.44764 -10.42443 -10.21608 -9.79728 -9.48916 -9.25299 -9.05422 -9.03801 -8.75051 -7.65827 -6.41106 -4.03626 0.32440 0.42176 1.42053 1.53167 1.87235 2.14520 2.75368 3.01820 3.18795 3.21513 3.24935 3.51182 4.01004 4.21380 4.24526 4.37016 4.44412 4.55517 4.57555 4.66359 4.79973 4.85020 4.93345 5.09582 5.23104 5.40547 5.43166 5.46787 5.62878 5.72032 5.86748 5.89811 6.25321 6.66583 6.84195 6.91407 7.26551 7.45595 8.08044 8.36127 8.57014 9.06447 9.26121 9.86765 10.62720 Molecular weight = 370.03amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002151 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.928817 B =13011.058162 C =14175.547749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.413 5.413 3 C -0.309 4.309 4 H 0.098 0.902 5 C 0.037 3.963 6 N -0.867 5.867 7 Si 0.933 3.067 8 H -0.271 1.271 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.505 3.495 12 O -0.577 6.577 13 C 0.005 3.995 14 C -0.149 4.149 15 C -0.064 4.064 16 C 0.158 3.842 17 O -0.311 6.311 18 C 0.116 3.884 19 C -0.046 4.046 20 Cl -0.037 7.037 21 C -0.096 4.096 22 C -0.100 4.100 23 C -0.096 4.096 24 C -0.046 4.046 25 Cl -0.037 7.037 26 O 0.111 5.889 27 N -0.325 5.325 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.272 0.728 32 H 0.176 0.824 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 -28.417 -2.680 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.130 5.130 3 C -0.438 4.438 4 H 0.116 0.884 5 C -0.169 4.169 6 N -0.504 5.504 7 Si 0.759 3.241 8 H -0.196 1.196 9 H -0.207 1.207 10 H -0.195 1.195 11 C 0.292 3.708 12 O -0.461 6.461 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.127 4.127 16 C 0.083 3.917 17 O -0.227 6.227 18 C 0.070 3.930 19 C -0.074 4.074 20 Cl -0.008 7.008 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.074 4.074 25 Cl -0.008 7.008 26 O 0.039 5.961 27 N -0.031 5.031 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.193 0.807 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.845 -27.084 -2.282 27.450 hybrid contribution 0.912 0.572 0.013 1.077 sum -2.933 -26.511 -2.269 26.769 Atomic orbital electron populations 1.21835 0.80438 1.00469 1.01421 1.43413 1.06142 1.04212 1.59225 1.19585 1.06414 0.85747 1.32018 0.88431 1.25587 0.96366 1.00647 0.94282 1.69913 1.20487 1.31673 1.28369 0.85898 0.79449 0.80208 0.78572 1.19605 1.20734 1.19458 1.16859 0.86666 0.81105 0.86195 1.90620 1.12622 1.85750 1.57081 1.24090 0.89264 0.97830 1.04130 1.22442 1.00868 0.90462 1.03355 1.23404 0.86842 0.93833 1.08585 1.20752 1.03307 0.84129 0.83484 1.86219 1.93993 1.14251 1.28252 1.18076 0.89697 0.83927 1.01339 1.21330 0.87482 0.92991 1.05557 1.98426 1.28425 1.77382 1.96550 1.21156 0.99845 0.91366 0.99115 1.21147 0.90823 1.00784 0.99129 1.21155 1.00029 0.91227 0.99043 1.21341 0.87680 0.92922 1.05467 1.98431 1.30138 1.75860 1.96324 1.84808 1.33039 1.12237 1.66035 1.74492 1.16405 0.95197 1.16961 0.92549 0.91348 0.92971 0.91735 0.80679 0.90088 0.89116 0.83739 0.83716 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.53 7.97 59.85 0.48 3.01 16 2 N -0.41 -11.41 2.97 -123.16 -0.37 -11.78 16 3 C -0.31 -8.86 9.01 -15.02 -0.14 -9.00 16 4 H 0.10 2.84 7.64 -52.49 -0.40 2.43 16 5 C 0.04 1.01 5.16 -17.44 -0.09 0.92 16 6 N -0.87 -23.90 11.07 55.50 0.61 -23.28 16 7 Si 0.93 20.89 29.56 -169.99 -5.02 15.87 16 8 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 11 C 0.50 13.57 7.64 -12.19 -0.09 13.47 16 12 O -0.58 -16.86 16.80 5.32 0.09 -16.78 16 13 C 0.01 0.12 6.87 -82.54 -0.57 -0.45 16 14 C -0.15 -2.68 10.93 -39.06 -0.43 -3.10 16 15 C -0.06 -0.97 7.10 -35.36 -0.25 -1.22 16 16 C 0.16 1.78 6.62 36.01 0.24 2.02 16 17 O -0.31 -3.87 8.96 -19.62 -0.18 -4.05 16 18 C 0.12 1.18 5.71 -39.17 -0.22 0.96 16 19 C -0.05 -0.40 6.33 -39.37 -0.25 -0.65 16 20 Cl -0.04 -0.36 28.50 -51.86 -1.48 -1.84 16 21 C -0.10 -0.57 9.83 -39.56 -0.39 -0.96 16 22 C -0.10 -0.47 10.04 -39.57 -0.40 -0.87 16 23 C -0.10 -0.58 9.82 -39.57 -0.39 -0.97 16 24 C -0.05 -0.41 6.33 -39.37 -0.25 -0.66 16 25 Cl -0.04 -0.37 28.50 -51.86 -1.48 -1.84 16 26 O 0.11 1.93 11.18 17.21 0.19 2.13 16 27 N -0.33 -6.73 8.69 33.29 0.29 -6.44 16 28 H 0.06 1.47 7.77 -51.93 -0.40 1.06 16 29 H 0.07 1.72 7.17 -51.93 -0.37 1.35 16 30 H 0.05 1.19 5.31 -51.93 -0.28 0.91 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.18 2.85 8.06 -52.49 -0.42 2.42 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 36 H 0.15 0.25 8.06 -52.48 -0.42 -0.17 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -33.48 361.64 -7.76 -41.24 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.12 Total: -1.16 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.75 Total: 2.48 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.54 Total: -41.50 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.11 Total: -18.70 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -2.96 Total: -3.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.48 -7.76 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.967 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds