Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47030 * 239.99941 * 3 2 1 5 5 H 1.48504 * 109.47410 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47333 * 119.99756 * 3 2 1 7 7 C 1.37869 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47056 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00044 * 104.23138 * 10 9 7 12 12 O 1.21581 * 119.99983 * 186.22733 * 11 10 9 13 13 C 1.47623 * 120.00281 * 6.23703 * 11 10 9 14 14 C 1.39869 * 120.01165 * 326.20009 * 13 11 10 15 15 C 1.37643 * 120.14364 * 179.97438 * 14 13 11 16 16 C 1.38965 * 120.04960 * 359.96178 * 15 14 13 17 17 C 1.39870 * 120.08703 * 0.16365 * 16 15 14 18 18 C 1.38254 * 120.02681 * 0.05709 * 17 16 15 19 19 N 1.39377 * 106.74993 * 180.24480 * 17 16 15 20 20 H 0.96993 * 125.87742 * 179.77780 * 19 17 16 21 21 C 1.34638 * 108.25689 * 359.77730 * 19 17 16 22 22 O 1.21680 * 125.14765 * 180.02562 * 21 19 17 23 23 N 1.34605 * 109.71395 * 0.02562 * 21 19 17 24 24 C 1.46499 * 125.76085 * 179.97438 * 23 21 19 25 25 C 1.54267 * 110.48565 * 300.02590 * 24 23 21 26 26 C 1.53879 * 106.59877 * 142.28763 * 25 24 23 27 27 C 1.54267 * 106.64061 * 359.97147 * 26 25 24 28 28 C 1.54891 * 110.48480 * 54.79786 * 24 23 21 29 29 C 1.46494 * 119.99933 * 284.23076 * 10 9 7 30 30 C 1.52998 * 117.49955 * 196.50795 * 29 10 9 31 31 C 1.53004 * 117.50120 * 127.84831 * 29 10 9 32 32 H 0.97006 * 119.99591 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47685 * 59.99569 * 9 7 2 34 34 H 1.09000 * 109.47040 * 299.99204 * 9 7 2 35 35 H 1.07993 * 119.92821 * 359.97438 * 14 13 11 36 36 H 1.07999 * 119.97507 * 179.97438 * 15 14 13 37 37 H 1.08002 * 120.13488 * 180.22291 * 18 17 16 38 38 H 1.08994 * 110.54375 * 177.40651 * 24 23 21 39 39 H 1.08996 * 110.03166 * 23.00312 * 25 24 23 40 40 H 1.09002 * 110.03059 * 261.56857 * 25 24 23 41 41 H 1.08996 * 110.03096 * 119.28647 * 26 25 24 42 42 H 1.09005 * 110.02552 * 240.66622 * 26 25 24 43 43 H 1.09002 * 110.48615 * 95.09409 * 27 26 25 44 44 H 1.09000 * 110.48512 * 217.73826 * 27 26 25 45 45 H 1.09000 * 110.75405 * 321.69502 * 28 24 23 46 46 H 1.09004 * 110.76010 * 85.06283 * 28 24 23 47 47 H 1.09003 * 115.55162 * 342.18048 * 29 10 9 48 48 H 1.08995 * 117.49959 * 0.02562 * 30 29 10 49 49 H 1.09001 * 117.50010 * 145.02167 * 30 29 10 50 50 H 1.08994 * 117.49954 * 214.98239 * 31 29 10 51 51 H 1.09003 * 117.49488 * 359.97438 * 31 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7466 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.4229 -4.3113 1.1319 12 8 3.2930 -5.1598 1.1630 13 6 1.6070 -4.0464 2.3334 14 6 1.1550 -2.7499 2.6003 15 6 0.3937 -2.5000 3.7194 16 6 0.0713 -3.5363 4.5873 17 6 0.5223 -4.8346 4.3275 18 6 1.2911 -5.0885 3.2068 19 7 0.0399 -5.6409 5.3569 20 1 0.1871 -6.5953 5.4479 21 6 -0.6658 -4.8674 6.2032 22 8 -1.2232 -5.2596 7.2112 23 7 -0.6615 -3.5944 5.7657 24 6 -1.3224 -2.4622 6.4194 25 6 -2.8418 -2.7091 6.5207 26 6 -3.2898 -2.1418 7.8792 27 6 -2.0274 -1.5704 8.5572 28 6 -0.8584 -2.3403 7.8921 29 6 2.9161 -3.9666 -1.2292 30 6 3.5865 -5.3407 -1.2864 31 6 4.4403 -4.0770 -1.1553 32 1 -0.4850 0.8401 -0.0004 33 1 0.6246 -2.5571 -0.8896 34 1 0.6241 -2.5567 0.8904 35 1 1.4039 -1.9433 1.9268 36 1 0.0465 -1.4978 3.9231 37 1 1.6373 -6.0910 3.0026 38 1 -1.1214 -1.5376 5.8784 39 1 -3.0503 -3.7780 6.4753 40 1 -3.3587 -2.1927 5.7118 41 1 -4.0240 -1.3504 7.7295 42 1 -3.7164 -2.9355 8.4927 43 1 -1.9401 -0.5016 8.3619 44 1 -2.0504 -1.7625 9.6299 45 1 -0.7399 -3.3257 8.3426 46 1 0.0679 -1.7697 7.9594 47 1 2.4837 -3.5788 -2.1516 48 1 3.4967 -5.9814 -0.4093 49 1 3.5956 -5.8567 -2.2465 50 1 5.0107 -3.7621 -2.0291 51 1 4.9126 -3.8857 -0.1917 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089800342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = 42.757473 kcal Electronic energy + Delta-G solvation = -34245.316745 eV Core-core repulsion = 29919.183266 eV Total energy + Delta-G solvation = -4326.133479 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47502 -39.99189 -38.40484 -37.70610 -36.06997 -35.63875 -34.13207 -34.04726 -32.32430 -30.25046 -28.98979 -28.89364 -27.92740 -27.34790 -23.83769 -23.17813 -22.92175 -22.21803 -21.81925 -21.51986 -20.67645 -19.76349 -19.13948 -18.10143 -17.43851 -16.77628 -16.29202 -16.11170 -16.05028 -15.69917 -15.39034 -15.21532 -14.57631 -14.49648 -14.16023 -14.07442 -13.84115 -13.82551 -13.64390 -13.23854 -12.83745 -12.68277 -12.47437 -12.34816 -12.28183 -12.24877 -11.45091 -11.36187 -11.30483 -11.25667 -11.19331 -11.03285 -10.87154 -10.82833 -10.61718 -10.56142 -10.36560 -10.31517 -10.20125 -10.07029 -9.75240 -9.56280 -8.94260 -8.67608 -8.22227 -7.66722 -7.54939 -6.33201 -4.42603 1.16268 1.53977 2.29354 2.92669 3.16604 3.19113 3.22315 3.25481 3.31368 3.74722 4.05905 4.21989 4.35824 4.40932 4.53095 4.58256 4.75275 4.95056 4.97816 5.03261 5.11173 5.28230 5.29361 5.33818 5.44407 5.48211 5.48682 5.51455 5.58991 5.60203 5.65410 5.69930 5.74664 5.89675 5.99543 6.02265 6.07138 6.18324 6.18771 6.21971 6.27742 6.47922 6.51913 6.61969 6.70359 6.75657 6.87096 6.91151 7.02676 7.10108 7.37708 7.49684 7.61488 7.86674 8.21514 8.26102 8.65294 8.85874 9.25856 10.71339 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.003225 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.190625 B = 8680.856993 C =11110.860072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.558 5.558 11 C 0.560 3.440 12 O -0.560 6.560 13 C -0.123 4.123 14 C -0.069 4.069 15 C -0.119 4.119 16 C 0.110 3.890 17 C 0.060 3.940 18 C -0.051 4.051 19 N -0.643 5.643 20 H 0.431 0.569 21 C 0.682 3.318 22 O -0.562 6.562 23 N -0.529 5.529 24 C 0.156 3.844 25 C -0.136 4.136 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.139 4.139 29 C 0.093 3.907 30 C -0.204 4.204 31 C -0.187 4.187 32 H 0.269 0.731 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.198 0.802 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.125 0.875 48 H 0.133 0.867 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -4.129 9.246 10.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.089 3.911 10 N -0.285 5.285 11 C 0.349 3.651 12 O -0.442 6.442 13 C -0.128 4.128 14 C -0.088 4.088 15 C -0.140 4.140 16 C 0.008 3.992 17 C -0.041 4.041 18 C -0.073 4.073 19 N -0.289 5.289 20 H 0.273 0.727 21 C 0.384 3.616 22 O -0.440 6.440 23 N -0.250 5.250 24 C 0.054 3.946 25 C -0.174 4.174 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.177 4.177 29 C -0.012 4.012 30 C -0.241 4.241 31 C -0.225 4.225 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.215 0.785 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.143 0.857 48 H 0.150 0.850 49 H 0.099 0.901 50 H 0.106 0.894 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.429 -4.528 10.019 11.517 hybrid contribution 0.455 0.624 -0.208 0.799 sum -2.975 -3.904 9.810 10.970 Atomic orbital electron populations 1.69923 1.05930 1.27782 1.48383 1.24958 0.94870 0.99316 0.94355 0.86573 0.79655 0.82353 0.79127 1.19985 1.21063 1.19845 1.21425 0.94030 0.90065 1.52575 0.91549 1.20354 0.88004 0.82428 1.00274 1.47521 1.41796 1.32065 1.07125 1.18098 0.83052 0.80988 0.82912 1.90551 1.34007 1.35912 1.83745 1.19605 1.02553 0.93996 0.96605 1.22711 0.92497 0.98509 0.95122 1.20107 1.02478 0.97279 0.94140 1.18352 0.96972 0.94780 0.89054 1.17676 1.03813 0.88934 0.93665 1.19913 0.96657 0.99853 0.90863 1.42892 1.51222 1.11411 1.23387 0.72738 1.15899 0.81369 0.80724 0.83607 1.91013 1.51258 1.76208 1.25473 1.45119 1.49101 1.08453 1.22323 1.22113 0.92179 0.86690 0.93649 1.22502 0.93967 1.02770 0.98165 1.22034 0.97673 1.00252 0.95618 1.22279 0.94119 0.99493 0.99852 1.22930 0.98521 1.02370 0.93875 1.21468 0.91551 0.99462 0.88749 1.23800 1.04053 0.92411 1.03835 1.23125 0.94372 1.02347 1.02692 0.92163 0.94904 0.91030 0.78547 0.84931 0.84782 0.87417 0.90493 0.90924 0.91551 0.91488 0.91270 0.91219 0.89410 0.91012 0.85709 0.84961 0.90128 0.89445 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.84 13.29 55.43 0.74 -21.10 16 2 C 0.07 1.66 5.45 -17.82 -0.10 1.56 16 3 Si 0.90 18.92 29.54 -169.99 -5.02 13.90 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -12.76 7.62 -34.44 -0.26 -13.02 16 8 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.21 4.52 4.71 -5.19 -0.02 4.50 16 10 N -0.56 -11.17 2.86 -168.66 -0.48 -11.65 16 11 C 0.56 11.02 7.21 -12.43 -0.09 10.93 16 12 O -0.56 -11.51 12.52 5.29 0.07 -11.44 16 13 C -0.12 -2.19 5.52 -104.95 -0.58 -2.77 16 14 C -0.07 -1.24 7.39 -39.19 -0.29 -1.53 16 15 C -0.12 -1.87 9.84 -39.53 -0.39 -2.26 16 16 C 0.11 1.67 6.83 -83.79 -0.57 1.09 16 17 C 0.06 0.89 7.24 -83.81 -0.61 0.28 16 18 C -0.05 -0.79 9.62 -39.07 -0.38 -1.16 16 19 N -0.64 -8.57 6.16 -14.32 -0.09 -8.66 16 20 H 0.43 4.52 8.96 -40.82 -0.37 4.16 16 21 C 0.68 10.31 7.89 -87.20 -0.69 9.62 16 22 O -0.56 -9.52 15.51 5.21 0.08 -9.44 16 23 N -0.53 -7.48 2.75 -109.99 -0.30 -7.79 16 24 C 0.16 1.86 3.53 -66.27 -0.23 1.62 16 25 C -0.14 -1.53 6.36 -25.61 -0.16 -1.69 16 26 C -0.12 -1.10 6.80 -25.61 -0.17 -1.28 16 27 C -0.12 -1.07 6.84 -25.03 -0.17 -1.24 16 28 C -0.14 -1.53 6.40 -24.70 -0.16 -1.68 16 29 C 0.09 1.69 6.52 -67.93 -0.44 1.25 16 30 C -0.20 -3.36 9.63 -26.69 -0.26 -3.62 16 31 C -0.19 -3.19 9.88 -26.69 -0.26 -3.46 16 32 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.56 3.81 -52.29 -0.20 1.36 16 35 H 0.20 4.03 3.84 -52.49 -0.20 3.83 16 36 H 0.13 1.88 7.65 -52.49 -0.40 1.48 16 37 H 0.13 1.90 7.98 -52.49 -0.42 1.48 16 38 H 0.11 1.16 7.52 -51.93 -0.39 0.77 16 39 H 0.08 1.03 6.81 -51.93 -0.35 0.67 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.16 6.37 -51.93 -0.33 0.83 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 48 H 0.13 2.44 5.23 -52.08 -0.27 2.16 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 51 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -27.21 402.52 -11.88 -39.09 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -7.10 Total: 13.87 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -5.84 Total: -2.86 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.14 Total: -49.19 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.15 Total: -20.88 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.21 -11.88 -39.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089800342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.851 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds