Wall clock time and date at job start Tue Mar 31 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 119.99967 * 2 1 4 4 H 1.48497 * 109.47357 * 240.00552 * 3 2 1 5 5 H 1.48498 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46951 * 120.00514 * 3 2 1 7 7 C 1.39889 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99869 * 197.92026 * 7 2 1 9 9 C 1.41213 * 120.00124 * 17.91372 * 7 2 1 10 10 C 1.40837 * 120.17952 * 204.54724 * 9 7 2 11 11 C 1.36444 * 119.81003 * 180.02562 * 10 9 7 12 12 C 1.39307 * 120.18382 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.81471 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99999 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47148 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99881 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99848 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00147 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.46639 * 325.00145 * 18 17 15 20 20 C 1.52998 * 109.47352 * 204.99941 * 18 17 15 21 21 C 1.50694 * 109.47177 * 64.99702 * 20 18 17 22 22 C 1.38242 * 119.99980 * 89.99927 * 21 20 18 23 23 C 1.38226 * 119.99923 * 180.02562 * 22 21 20 24 24 C 1.38237 * 120.00433 * 0.02562 * 23 22 21 25 25 C 1.38233 * 119.99393 * 0.25651 * 24 23 22 26 26 C 1.38232 * 120.00011 * 270.02219 * 21 20 18 27 27 C 1.50707 * 109.47001 * 84.99618 * 18 17 15 28 28 O 1.20822 * 119.99928 * 0.02562 * 27 18 17 29 29 O 1.34231 * 119.99869 * 180.02562 * 27 18 17 30 30 C 1.39313 * 120.36929 * 0.24929 * 12 11 10 31 31 C 1.36435 * 120.17922 * 359.48498 * 30 12 11 32 32 H 0.96996 * 120.00160 * 359.97438 * 1 2 3 33 33 H 1.08000 * 120.09537 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.90527 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47206 * 59.99747 * 14 13 12 36 36 H 1.09000 * 109.47188 * 299.99202 * 14 13 12 37 37 H 0.97003 * 120.00548 * 359.97438 * 17 15 14 38 38 H 1.09000 * 109.46796 * 304.99314 * 20 18 17 39 39 H 1.09004 * 109.46534 * 185.00058 * 20 18 17 40 40 H 1.08007 * 119.99512 * 0.02562 * 22 21 20 41 41 H 1.08009 * 119.99964 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00196 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99317 * 179.72462 * 25 24 23 44 44 H 1.07994 * 120.00376 * 359.97438 * 26 21 20 45 45 H 0.96694 * 116.99864 * 180.02562 * 29 27 18 46 46 H 1.07996 * 119.91032 * 179.72702 * 30 12 11 47 47 H 1.08008 * 120.09336 * 180.25666 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3536 -2.4046 -0.3772 10 6 1.8264 -3.6480 0.0852 11 6 1.1883 -4.7962 -0.2839 12 6 0.0725 -4.7409 -1.1161 13 8 -0.5559 -5.8874 -1.4789 14 6 -1.6942 -5.7608 -2.3335 15 6 -2.2559 -7.1279 -2.6278 16 8 -1.7326 -8.1136 -2.1529 17 7 -3.3391 -7.2552 -3.4196 18 6 -3.8848 -8.5842 -3.7063 19 1 -3.0698 -9.3048 -3.7736 20 6 -4.6447 -8.5481 -5.0337 21 6 -3.6812 -8.2621 -6.1565 22 6 -3.0525 -9.3053 -6.8103 23 6 -2.1682 -9.0430 -7.8399 24 6 -1.9122 -7.7375 -8.2154 25 6 -2.5364 -6.6941 -7.5577 26 6 -3.4256 -6.9566 -6.5323 27 6 -4.8245 -8.9905 -2.6003 28 8 -5.0187 -8.2462 -1.6686 29 8 -5.4457 -10.1794 -2.6504 30 6 -0.3982 -3.5155 -1.5826 31 6 0.2251 -2.3578 -1.2185 32 1 -0.4850 0.8400 0.0004 33 1 2.6915 -3.6926 0.7301 34 1 1.5498 -5.7506 0.0695 35 1 -1.3967 -5.2820 -3.2664 36 1 -2.4535 -5.1543 -1.8398 37 1 -3.7574 -6.4668 -3.7998 38 1 -5.4027 -7.7656 -4.9972 39 1 -5.1251 -9.5117 -5.2036 40 1 -3.2522 -10.3253 -6.5166 41 1 -1.6767 -9.8580 -8.3504 42 1 -1.2210 -7.5325 -9.0195 43 1 -2.3329 -5.6740 -7.8481 44 1 -3.9168 -6.1416 -6.0216 45 1 -6.0392 -10.3958 -1.9183 46 1 -1.2612 -3.4817 -2.2310 47 1 -0.1435 -1.4082 -1.5776 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089830053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:54 Heat of formation + Delta-G solvation = -117.405907 kcal Electronic energy + Delta-G solvation = -31959.148948 eV Core-core repulsion = 27457.944418 eV Total energy + Delta-G solvation = -4501.204530 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.05484 -39.67077 -39.45099 -38.43926 -36.52362 -36.25098 -35.68270 -33.36026 -32.88356 -31.20819 -30.25211 -29.64492 -29.24976 -27.57365 -25.43340 -24.68905 -22.95420 -22.25314 -21.54191 -21.17175 -20.78519 -20.19792 -18.42018 -17.63864 -17.49816 -17.28062 -16.99212 -16.67848 -16.25030 -15.82619 -15.66097 -15.37346 -15.33544 -15.13030 -14.43936 -14.02020 -13.95768 -13.74128 -13.62966 -13.46135 -13.38881 -13.06365 -12.82334 -12.58810 -12.39650 -12.17796 -11.94343 -11.77065 -11.65682 -11.53752 -11.50235 -11.32257 -11.10555 -11.05748 -10.92198 -10.63602 -10.00341 -9.86853 -9.80707 -9.55447 -9.36888 -9.21660 -9.06183 -9.02340 -7.66592 -7.03281 -6.74110 -4.26275 0.97503 1.09707 1.90546 2.22860 2.60635 2.76535 2.95894 2.99592 3.06921 3.09888 3.21717 3.44772 3.94287 4.15142 4.27727 4.33234 4.43367 4.60310 4.68562 4.70511 4.79712 4.83247 4.94597 5.07349 5.17881 5.26154 5.34339 5.36370 5.41663 5.66738 5.67650 5.71690 5.97192 6.06622 6.14425 6.18199 6.22218 6.23585 6.28141 6.65950 6.67687 6.88113 7.05471 7.14643 7.26822 7.39484 7.54970 7.57446 7.87418 7.98506 8.07688 8.14984 8.41442 8.62701 8.89112 8.97617 10.20785 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.002024 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.922907 B =13832.870736 C =15145.657159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.195 4.195 11 C -0.107 4.107 12 C -0.013 4.013 13 O -0.304 6.304 14 C 0.055 3.945 15 C 0.528 3.472 16 O -0.512 6.512 17 N -0.712 5.712 18 C 0.168 3.832 19 H 0.130 0.870 20 C -0.081 4.081 21 C -0.088 4.088 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.116 4.116 26 C -0.110 4.110 27 C 0.463 3.537 28 O -0.497 6.497 29 O -0.516 6.516 30 C -0.174 4.174 31 C -0.135 4.135 32 H 0.280 0.720 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.407 0.593 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.411 0.589 46 H 0.094 0.906 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 -14.854 -16.416 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.215 4.215 11 C -0.126 4.126 12 C -0.056 4.056 13 O -0.219 6.219 14 C -0.025 4.025 15 C 0.314 3.686 16 O -0.385 6.385 17 N -0.368 5.368 18 C 0.060 3.940 19 H 0.148 0.852 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.128 4.128 27 C 0.302 3.698 28 O -0.383 6.383 29 O -0.328 6.328 30 C -0.193 4.193 31 C -0.154 4.154 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.242 0.758 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.270 0.730 46 H 0.112 0.888 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.383 -15.283 -16.018 25.367 hybrid contribution -0.475 1.296 0.354 1.425 sum -12.858 -13.987 -15.664 24.624 Atomic orbital electron populations 1.69832 1.07518 1.29182 1.36024 1.25880 0.94719 1.01228 0.92362 0.86378 0.80126 0.80311 0.79952 1.18888 1.20433 1.19045 1.19446 0.98130 0.91220 1.40445 0.90476 1.17602 0.91791 0.92161 0.89814 1.20609 1.03230 0.92142 1.05537 1.19618 0.95276 0.97831 0.99846 1.18593 0.97913 0.83470 1.05637 1.85908 1.40846 1.30668 1.64471 1.22024 0.90789 0.93195 0.96476 1.20502 0.79272 0.91614 0.77191 1.90719 1.59104 1.39760 1.48912 1.45561 1.30960 1.07748 1.52540 1.20318 0.95600 0.87931 0.90131 0.85230 1.20824 0.96482 1.05194 0.89365 1.19591 0.98498 0.93727 0.96950 1.21065 0.96928 0.98805 0.96178 1.21163 0.98092 0.96914 0.97414 1.21218 0.99585 0.92912 0.99955 1.21194 0.96634 0.99437 0.96109 1.21041 0.98508 0.95829 0.97446 1.24065 0.79215 0.78888 0.87585 1.90768 1.60369 1.52712 1.34435 1.84492 1.58311 1.37468 1.52530 1.20579 1.01497 0.92854 1.04339 1.20927 0.98577 0.96423 0.99480 0.90926 0.88088 0.88323 0.89884 0.89709 0.75750 0.89479 0.87688 0.85796 0.85968 0.86038 0.85783 0.86079 0.72964 0.88783 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.55 10.96 55.54 0.61 -19.94 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.24 9.04 -37.84 -0.34 -12.58 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 10 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 11 C -0.11 -2.57 9.92 -39.83 -0.40 -2.97 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.30 -6.67 9.65 -38.65 -0.37 -7.05 16 14 C 0.05 0.90 5.21 36.01 0.19 1.09 16 15 C 0.53 8.26 7.74 -10.99 -0.08 8.18 16 16 O -0.51 -10.13 16.16 -14.35 -0.23 -10.36 16 17 N -0.71 -7.69 4.06 -54.93 -0.22 -7.91 16 18 C 0.17 1.57 2.47 -69.08 -0.17 1.40 16 19 H 0.13 1.34 7.58 -51.93 -0.39 0.95 16 20 C -0.08 -0.48 4.85 -27.89 -0.14 -0.62 16 21 C -0.09 -0.64 4.95 -104.63 -0.52 -1.15 16 22 C -0.11 -0.82 9.70 -39.58 -0.38 -1.20 16 23 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.11 -0.82 9.10 -39.58 -0.36 -1.18 16 27 C 0.46 4.94 7.66 36.01 0.28 5.22 16 28 O -0.50 -7.29 17.08 -18.75 -0.32 -7.61 16 29 O -0.52 -3.79 13.23 -39.26 -0.52 -4.31 16 30 C -0.17 -4.02 8.96 -39.83 -0.36 -4.38 16 31 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.08 1.18 7.63 -51.93 -0.40 0.78 16 36 H 0.09 1.31 7.66 -51.93 -0.40 0.91 16 37 H 0.41 3.20 7.83 -40.82 -0.32 2.88 16 38 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.10 0.48 7.94 -51.93 -0.41 0.07 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.12 0.67 7.57 -52.49 -0.40 0.28 16 45 H 0.41 1.51 9.10 45.56 0.41 1.93 16 46 H 0.09 1.85 6.27 -52.49 -0.33 1.52 16 47 H 0.12 3.18 6.16 -52.48 -0.32 2.85 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -35.75 407.99 -10.15 -45.89 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.06 Total: 9.74 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -5.14 Total: -18.17 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.39 Total: -27.85 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.44 Total: -29.33 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.75 -10.15 -45.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089830053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.514 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds