Wall clock time and date at job start Tue Mar 31 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 119.99967 * 2 1 4 4 H 1.48497 * 109.47357 * 240.00552 * 3 2 1 5 5 H 1.48498 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46951 * 120.00514 * 3 2 1 7 7 C 1.39889 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99869 * 197.92026 * 7 2 1 9 9 C 1.41213 * 120.00124 * 17.91372 * 7 2 1 10 10 C 1.40837 * 120.17952 * 204.54724 * 9 7 2 11 11 C 1.36444 * 119.81003 * 180.02562 * 10 9 7 12 12 C 1.39307 * 120.18382 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.81471 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99999 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47148 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99881 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99848 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00147 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.46639 * 325.00145 * 18 17 15 20 20 C 1.52998 * 109.47352 * 204.99941 * 18 17 15 21 21 C 1.50694 * 109.47177 * 64.99702 * 20 18 17 22 22 C 1.38242 * 119.99980 * 89.99927 * 21 20 18 23 23 C 1.38226 * 119.99923 * 180.02562 * 22 21 20 24 24 C 1.38237 * 120.00433 * 0.02562 * 23 22 21 25 25 C 1.38233 * 119.99393 * 0.25651 * 24 23 22 26 26 C 1.38232 * 120.00011 * 270.02219 * 21 20 18 27 27 C 1.50707 * 109.47001 * 84.99618 * 18 17 15 28 28 O 1.20822 * 119.99928 * 0.02562 * 27 18 17 29 29 O 1.34231 * 119.99869 * 180.02562 * 27 18 17 30 30 C 1.39313 * 120.36929 * 0.24929 * 12 11 10 31 31 C 1.36435 * 120.17922 * 359.48498 * 30 12 11 32 32 H 0.96996 * 120.00160 * 359.97438 * 1 2 3 33 33 H 1.08000 * 120.09537 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.90527 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47206 * 59.99747 * 14 13 12 36 36 H 1.09000 * 109.47188 * 299.99202 * 14 13 12 37 37 H 0.97003 * 120.00548 * 359.97438 * 17 15 14 38 38 H 1.09000 * 109.46796 * 304.99314 * 20 18 17 39 39 H 1.09004 * 109.46534 * 185.00058 * 20 18 17 40 40 H 1.08007 * 119.99512 * 0.02562 * 22 21 20 41 41 H 1.08009 * 119.99964 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00196 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99317 * 179.72462 * 25 24 23 44 44 H 1.07994 * 120.00376 * 359.97438 * 26 21 20 45 45 H 0.96694 * 116.99864 * 180.02562 * 29 27 18 46 46 H 1.07996 * 119.91032 * 179.72702 * 30 12 11 47 47 H 1.08008 * 120.09336 * 180.25666 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3536 -2.4046 -0.3772 10 6 1.8264 -3.6480 0.0852 11 6 1.1883 -4.7962 -0.2839 12 6 0.0725 -4.7409 -1.1161 13 8 -0.5559 -5.8874 -1.4789 14 6 -1.6942 -5.7608 -2.3335 15 6 -2.2559 -7.1279 -2.6278 16 8 -1.7326 -8.1136 -2.1529 17 7 -3.3391 -7.2552 -3.4196 18 6 -3.8848 -8.5842 -3.7063 19 1 -3.0698 -9.3048 -3.7736 20 6 -4.6447 -8.5481 -5.0337 21 6 -3.6812 -8.2621 -6.1565 22 6 -3.0525 -9.3053 -6.8103 23 6 -2.1682 -9.0430 -7.8399 24 6 -1.9122 -7.7375 -8.2154 25 6 -2.5364 -6.6941 -7.5577 26 6 -3.4256 -6.9566 -6.5323 27 6 -4.8245 -8.9905 -2.6003 28 8 -5.0187 -8.2462 -1.6686 29 8 -5.4457 -10.1794 -2.6504 30 6 -0.3982 -3.5155 -1.5826 31 6 0.2251 -2.3578 -1.2185 32 1 -0.4850 0.8400 0.0004 33 1 2.6915 -3.6926 0.7301 34 1 1.5498 -5.7506 0.0695 35 1 -1.3967 -5.2820 -3.2664 36 1 -2.4535 -5.1543 -1.8398 37 1 -3.7574 -6.4668 -3.7998 38 1 -5.4027 -7.7656 -4.9972 39 1 -5.1251 -9.5117 -5.2036 40 1 -3.2522 -10.3253 -6.5166 41 1 -1.6767 -9.8580 -8.3504 42 1 -1.2210 -7.5325 -9.0195 43 1 -2.3329 -5.6740 -7.8481 44 1 -3.9168 -6.1416 -6.0216 45 1 -6.0392 -10.3958 -1.9183 46 1 -1.2612 -3.4817 -2.2310 47 1 -0.1435 -1.4082 -1.5776 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089830053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:52 Heat of formation + Delta-G solvation = -138.674583 kcal Electronic energy + Delta-G solvation = -31960.071227 eV Core-core repulsion = 27457.944418 eV Total energy + Delta-G solvation = -4502.126809 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95357 -40.89133 -40.19662 -39.88520 -38.08756 -37.22175 -36.61397 -35.23056 -33.69904 -31.72620 -31.62481 -31.39038 -30.67103 -28.85101 -26.59722 -26.04959 -23.58937 -23.36234 -22.89802 -22.34620 -21.86837 -21.56293 -19.30062 -19.22109 -18.93371 -18.49322 -17.87217 -17.60088 -17.37943 -17.07071 -16.92011 -16.53966 -16.10277 -15.91783 -15.80444 -15.66071 -15.19972 -14.91497 -14.62850 -14.47903 -14.23737 -14.18899 -14.02186 -13.75863 -13.69307 -13.37799 -13.27377 -13.15208 -12.79743 -12.74935 -12.73283 -12.56646 -12.31373 -12.17232 -11.82225 -11.75063 -11.73776 -11.64592 -11.34145 -11.05229 -10.86997 -10.53651 -9.75941 -9.61688 -9.57261 -8.93760 -8.60286 -6.22807 0.42079 0.55850 0.93173 1.03920 1.08220 1.22109 1.41078 1.49203 1.51189 1.55541 2.13538 2.23865 2.72091 2.83342 2.89591 3.51286 3.69916 3.71169 3.77568 3.89705 4.09081 4.11831 4.15209 4.20161 4.29242 4.30701 4.35301 4.41343 4.49178 4.67173 4.78566 4.83245 4.84240 4.99042 5.07644 5.14995 5.17306 5.21715 5.36733 5.49124 5.52794 5.61378 5.64727 5.69022 5.69489 5.95032 6.05261 6.16025 6.17671 6.25574 6.54658 6.75127 6.86899 6.95178 6.98330 7.07702 8.36710 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.002024 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.922907 B =13832.870736 C =15145.657159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.057 3.943 10 C -0.207 4.207 11 C -0.121 4.121 12 C -0.007 4.007 13 O -0.324 6.324 14 C 0.043 3.957 15 C 0.530 3.470 16 O -0.561 6.561 17 N -0.691 5.691 18 C 0.166 3.834 19 H 0.121 0.879 20 C -0.068 4.068 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.120 4.120 27 C 0.470 3.530 28 O -0.543 6.543 29 O -0.503 6.503 30 C -0.169 4.169 31 C -0.153 4.153 32 H 0.288 0.712 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.423 0.577 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.429 0.571 46 H 0.130 0.870 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 -14.831 -17.765 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.055 3.945 10 C -0.226 4.226 11 C -0.139 4.139 12 C -0.051 4.051 13 O -0.239 6.239 14 C -0.035 4.035 15 C 0.317 3.683 16 O -0.438 6.438 17 N -0.347 5.347 18 C 0.059 3.941 19 H 0.139 0.861 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.138 4.138 27 C 0.311 3.689 28 O -0.432 6.432 29 O -0.316 6.316 30 C -0.188 4.188 31 C -0.173 4.173 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.262 0.738 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.291 0.709 46 H 0.148 0.852 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.885 -15.289 -17.412 27.013 hybrid contribution -0.152 1.090 0.698 1.303 sum -14.037 -14.199 -16.714 26.038 Atomic orbital electron populations 1.69873 1.08854 1.30568 1.36179 1.26706 0.95513 1.04343 0.91311 0.85262 0.78776 0.75755 0.79969 1.18477 1.19186 1.18656 1.19696 0.98392 0.92408 1.42319 0.90661 1.17970 0.92812 0.92969 0.90765 1.20770 1.03769 0.92183 1.05915 1.19863 0.95782 0.98103 1.00201 1.18698 0.97516 0.84204 1.04666 1.85878 1.42539 1.29982 1.65543 1.22406 0.89561 0.94592 0.96969 1.20390 0.80037 0.90547 0.77315 1.90701 1.60971 1.40913 1.51258 1.45371 1.29338 1.09395 1.50631 1.20522 0.95481 0.86641 0.91494 0.86137 1.20828 0.96021 1.07073 0.86627 1.19746 0.98762 0.93717 0.97283 1.21362 0.96734 0.99783 0.96085 1.21431 0.98415 0.97324 0.97794 1.21473 0.99967 0.93245 1.00445 1.21441 0.97057 0.99993 0.96571 1.21329 0.98425 0.96557 0.97450 1.24190 0.78783 0.79043 0.86902 1.90762 1.62146 1.54218 1.36117 1.84449 1.58162 1.35652 1.53294 1.20842 1.02065 0.91782 1.04116 1.20949 0.99113 0.96961 1.00260 0.90121 0.87347 0.87053 0.87086 0.88266 0.73849 0.87627 0.85685 0.84299 0.84730 0.85127 0.84969 0.84346 0.70881 0.85216 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.80 10.96 21.82 0.24 -42.56 16 2 C 0.04 1.78 5.13 85.23 0.44 2.22 16 3 Si 0.98 37.94 29.60 68.60 2.03 39.97 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.50 -26.96 9.04 23.40 0.21 -26.75 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.06 3.11 5.57 -21.28 -0.12 3.00 16 10 C -0.21 -10.56 9.74 22.49 0.22 -10.35 16 11 C -0.12 -5.86 9.92 22.11 0.22 -5.64 16 12 C -0.01 -0.34 6.71 22.79 0.15 -0.19 16 13 O -0.32 -14.00 9.65 -70.92 -0.68 -14.68 16 14 C 0.04 1.35 5.21 71.24 0.37 1.73 16 15 C 0.53 16.04 7.74 87.66 0.68 16.72 16 16 O -0.56 -22.18 16.16 16.00 0.26 -21.92 16 17 N -0.69 -13.62 4.06 -446.09 -1.81 -15.43 16 18 C 0.17 2.77 2.47 44.25 0.11 2.88 16 19 H 0.12 2.34 7.58 -2.39 -0.02 2.33 16 20 C -0.07 -0.61 4.85 29.85 0.14 -0.47 16 21 C -0.10 -1.16 4.95 -19.87 -0.10 -1.26 16 22 C -0.12 -1.57 9.70 22.27 0.22 -1.36 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 25 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 26 C -0.12 -1.52 9.10 22.27 0.20 -1.32 16 27 C 0.47 9.20 7.66 71.24 0.55 9.75 16 28 O -0.54 -15.37 17.08 21.98 0.38 -15.00 16 29 O -0.50 -6.16 13.23 -51.43 -0.68 -6.84 16 30 C -0.17 -7.70 8.96 22.11 0.20 -7.50 16 31 C -0.15 -7.95 8.64 22.48 0.19 -7.76 16 32 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 33 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 35 H 0.11 2.85 7.63 -2.39 -0.02 2.83 16 36 H 0.10 2.84 7.66 -2.39 -0.02 2.82 16 37 H 0.42 5.51 7.83 -92.71 -0.73 4.78 16 38 H 0.11 0.61 8.09 -2.39 -0.02 0.59 16 39 H 0.13 0.69 7.94 -2.39 -0.02 0.67 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.13 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.15 7.57 -2.91 -0.02 1.12 16 45 H 0.43 2.15 9.10 -74.06 -0.67 1.47 16 46 H 0.13 4.80 6.27 -2.91 -0.02 4.78 16 47 H 0.11 5.96 6.16 -2.91 -0.02 5.94 16 Total: -1.00 -79.16 407.99 3.72 -75.44 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.36 Total: 32.31 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.35 Total: -31.29 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -1.57 Total: -58.00 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -0.73 Total: -58.44 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -79.16 3.72 -75.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089830053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.231 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds