Wall clock time and date at job start Tue Mar 31 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00031 * 2 1 4 4 H 1.09008 * 109.46961 * 329.99585 * 3 2 1 5 5 C 1.53001 * 109.47431 * 89.99454 * 3 2 1 6 6 C 1.50701 * 109.47173 * 210.00028 * 3 2 1 7 7 C 1.38303 * 119.96273 * 325.01738 * 6 3 2 8 8 C 1.38258 * 120.14097 * 179.97438 * 7 6 3 9 9 C 1.38139 * 120.06985 * 359.97438 * 8 7 6 10 10 C 1.38846 * 119.92715 * 359.73980 * 9 8 7 11 11 N 1.39949 * 120.06966 * 180.27732 * 10 9 8 12 12 C 1.34783 * 119.99822 * 213.52493 * 11 10 9 13 13 O 1.21586 * 119.99881 * 5.30523 * 12 11 10 14 14 N 1.34777 * 119.99641 * 185.30331 * 12 11 10 15 15 C 1.46499 * 120.00171 * 359.97438 * 14 12 11 16 16 C 1.50697 * 109.47071 * 90.00322 * 15 14 12 17 17 H 1.08007 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00329 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99684 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47358 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46919 * 120.00259 * 20 18 16 23 23 H 1.48495 * 109.47190 * 239.99916 * 20 18 16 24 24 C 1.46493 * 119.99975 * 180.02562 * 14 12 11 25 25 C 1.50692 * 109.47626 * 89.99639 * 24 14 12 26 26 C 1.38227 * 119.61959 * 94.99899 * 25 24 14 27 27 C 1.38631 * 119.16113 * 179.97438 * 26 25 24 28 28 C 1.38672 * 118.42275 * 0.02562 * 27 26 25 29 29 C 1.38180 * 119.16003 * 359.97438 * 28 27 26 30 30 N 1.31856 * 119.61667 * 274.72706 * 25 24 14 31 31 C 1.38091 * 119.96494 * 144.99792 * 6 3 2 32 32 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47287 * 300.00774 * 1 2 3 34 34 H 1.09003 * 109.47245 * 60.00297 * 1 2 3 35 35 H 1.09000 * 109.47206 * 300.00427 * 5 3 2 36 36 H 1.09007 * 109.46502 * 60.00424 * 5 3 2 37 37 H 1.08999 * 109.47109 * 179.97438 * 5 3 2 38 38 H 1.08004 * 119.92970 * 359.97438 * 7 6 3 39 39 H 1.07995 * 119.96873 * 180.02562 * 8 7 6 40 40 H 1.07997 * 120.03874 * 180.02562 * 9 8 7 41 41 H 0.96999 * 119.99931 * 33.53167 * 11 10 9 42 42 H 1.08999 * 109.47495 * 210.00073 * 15 14 12 43 43 H 1.09004 * 109.47150 * 330.00651 * 15 14 12 44 44 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.47459 * 210.00123 * 24 14 12 46 46 H 1.09003 * 109.46860 * 329.99239 * 24 14 12 47 47 H 1.07991 * 120.41834 * 359.96094 * 26 25 24 48 48 H 1.07999 * 120.78996 * 180.02562 * 27 26 25 49 49 H 1.07996 * 120.42105 * 180.02562 * 28 27 26 50 50 H 1.08006 * 119.61760 * 180.02562 * 29 28 27 51 51 H 1.07997 * 120.04034 * 0.02562 * 31 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3387 1.2639 -0.7104 7 6 4.1437 0.1444 -0.6047 8 6 5.3629 0.1021 -1.2554 9 6 5.7804 1.1785 -2.0138 10 6 4.9718 2.3015 -2.1267 11 7 5.3892 3.3914 -2.8990 12 6 5.0527 4.6444 -2.5338 13 8 4.4700 4.8358 -1.4840 14 7 5.3621 5.6851 -3.3324 15 6 6.0647 5.4544 -4.5971 16 6 5.0589 5.2343 -5.6976 17 1 4.0020 5.2629 -5.4769 18 6 5.4879 4.9953 -6.9860 19 7 6.7748 4.9590 -7.2544 20 14 4.2411 4.7218 -8.3499 21 1 2.8683 4.8118 -7.7910 22 1 4.4177 5.7596 -9.3973 23 1 4.4463 3.3772 -8.9458 24 6 4.9968 7.0470 -2.9353 25 6 6.1186 7.6544 -2.1331 26 6 7.0616 8.4428 -2.7654 27 6 8.0892 8.9973 -2.0181 28 6 8.1305 8.7363 -0.6568 29 6 7.1526 7.9385 -0.0942 30 7 6.1862 7.4320 -0.8352 31 6 3.7505 2.3435 -1.4665 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 1.2568 1.8016 1.9563 36 1 2.8829 1.0776 1.9563 37 1 2.6614 2.7671 1.4424 38 1 3.8194 -0.6987 -0.0127 39 1 5.9892 -0.7737 -1.1713 40 1 6.7327 1.1448 -2.5222 41 1 5.9207 3.2450 -3.6972 42 1 6.6793 6.3226 -4.8350 43 1 6.7002 4.5737 -4.5043 44 1 7.0766 4.7912 -8.1609 45 1 4.8192 7.6499 -3.8259 46 1 4.0911 7.0183 -2.3296 47 1 6.9987 8.6244 -3.8280 48 1 8.8399 9.6177 -2.4850 49 1 8.9165 9.1521 -0.0439 50 1 7.1774 7.7308 0.9654 51 1 3.1215 3.2176 -1.5486 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089905241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:49 Heat of formation + Delta-G solvation = -3.567664 kcal Electronic energy + Delta-G solvation = -33450.966293 eV Core-core repulsion = 29122.824005 eV Total energy + Delta-G solvation = -4328.142288 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.32800 -39.80214 -38.86769 -37.56468 -35.25956 -34.30646 -32.87269 -32.36633 -32.17993 -31.38418 -29.43669 -28.74932 -27.67517 -26.77707 -25.92952 -23.51208 -23.40415 -23.03075 -22.53849 -21.68888 -20.58067 -19.23277 -17.66962 -17.00094 -16.81426 -16.48678 -16.24919 -15.96983 -15.78162 -15.37857 -15.29489 -15.20548 -14.77972 -14.64931 -14.29699 -14.08010 -13.42351 -13.38733 -13.29860 -13.18259 -12.86795 -12.82998 -12.65915 -12.49084 -12.39633 -12.08980 -11.79865 -11.73602 -11.54641 -11.42311 -11.29202 -11.10559 -10.99858 -10.82225 -10.62074 -10.28134 -9.89023 -9.78469 -9.72267 -9.65658 -9.34225 -9.12242 -8.80771 -8.65447 -8.45618 -7.92140 -7.47696 -6.27233 -4.35641 1.28795 1.51848 1.62446 1.77637 3.17101 3.26368 3.28166 3.34215 3.68220 3.77939 4.10409 4.22401 4.28433 4.61590 4.68596 4.84820 4.98453 5.03321 5.06165 5.06680 5.18283 5.23397 5.24958 5.31051 5.36358 5.39056 5.50607 5.55200 5.64630 5.72521 5.76684 5.78563 5.81484 5.92723 5.98265 6.03874 6.20368 6.21328 6.26652 6.34769 6.38346 6.59137 6.70946 6.74016 6.80700 6.91644 6.97779 7.01485 7.23114 7.30741 7.50431 7.68472 7.70691 7.94020 8.32136 8.52216 8.77235 9.25563 9.35383 10.78896 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.006429 B = 0.003407 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4354.128886 B = 8217.445562 C =11119.781038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.130 3.870 4 H 0.068 0.932 5 C -0.167 4.167 6 C -0.072 4.072 7 C -0.124 4.124 8 C -0.103 4.103 9 C -0.154 4.154 10 C 0.188 3.812 11 N -0.683 5.683 12 C 0.709 3.291 13 O -0.583 6.583 14 N -0.605 5.605 15 C 0.240 3.760 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.186 3.814 25 C 0.118 3.882 26 C -0.156 4.156 27 C -0.082 4.082 28 C -0.182 4.182 29 C 0.092 3.908 30 N -0.455 5.455 31 C -0.113 4.113 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.416 0.584 42 H 0.039 0.961 43 H 0.028 0.972 44 H 0.265 0.735 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.137 0.863 48 H 0.130 0.870 49 H 0.128 0.872 50 H 0.149 0.851 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -1.433 12.327 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.073 3.927 4 H 0.086 0.914 5 C -0.224 4.224 6 C -0.073 4.073 7 C -0.143 4.143 8 C -0.122 4.122 9 C -0.176 4.176 10 C 0.092 3.908 11 N -0.332 5.332 12 C 0.411 3.589 13 O -0.462 6.462 14 N -0.339 5.339 15 C 0.120 3.880 16 C -0.578 4.578 17 H 0.082 0.918 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.061 3.939 25 C -0.022 4.022 26 C -0.176 4.176 27 C -0.108 4.108 28 C -0.202 4.202 29 C -0.066 4.066 30 N -0.164 5.164 31 C -0.134 4.134 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.256 0.744 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.155 0.845 48 H 0.148 0.852 49 H 0.146 0.854 50 H 0.167 0.833 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.106 -1.901 13.233 13.724 hybrid contribution 0.475 0.603 -1.812 1.968 sum -2.630 -1.298 11.420 11.791 Atomic orbital electron populations 1.22764 0.81360 1.02490 0.99935 1.87909 1.19297 1.27711 1.95133 1.20845 0.92019 0.84512 0.95363 0.91354 1.22236 1.01961 1.02460 0.95749 1.19446 0.95218 0.94469 0.98191 1.20769 0.94349 0.97929 1.01278 1.20822 0.96379 0.97720 0.97251 1.20897 0.99504 0.94486 1.02678 1.17472 0.92450 0.87246 0.93679 1.42909 1.57110 1.03670 1.29481 1.15775 0.79553 0.80424 0.83152 1.90867 1.47324 1.84083 1.23904 1.47294 1.60893 1.03695 1.22011 1.19363 0.92160 0.97623 0.78830 1.21559 0.93645 1.50038 0.92595 0.91778 1.24947 0.95365 0.94711 0.98680 1.69929 1.13355 1.48610 1.20954 0.86447 0.81538 0.77945 0.81625 1.19612 1.20831 1.20807 1.20012 0.94104 0.82428 0.97372 1.21961 0.96467 0.93335 0.90401 1.22124 0.95369 0.98580 1.01556 1.21542 0.97419 0.97826 0.93979 1.22089 1.00809 1.01285 0.95998 1.22766 0.90341 0.93547 0.99958 1.67664 1.23075 1.19179 1.06523 1.20938 0.95439 0.98643 0.98395 0.89801 0.94214 0.93992 0.92564 0.91732 0.90870 0.86069 0.86112 0.85985 0.74424 0.94294 0.95376 0.92486 0.88572 0.88992 0.84477 0.85164 0.85377 0.83347 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -4.96 9.49 -35.23 -0.33 -5.30 16 3 C 0.13 1.76 2.93 -27.88 -0.08 1.67 16 4 H 0.07 0.90 7.70 -51.92 -0.40 0.50 16 5 C -0.17 -2.01 9.51 37.16 0.35 -1.65 16 6 C -0.07 -1.13 5.00 -104.65 -0.52 -1.66 16 7 C -0.12 -1.81 9.35 -39.55 -0.37 -2.18 16 8 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 16 9 C -0.15 -2.44 9.96 -39.39 -0.39 -2.84 16 10 C 0.19 3.45 6.28 -83.68 -0.53 2.93 16 11 N -0.68 -13.53 5.22 -14.22 -0.07 -13.61 16 12 C 0.71 15.18 8.02 -86.91 -0.70 14.48 16 13 O -0.58 -13.28 13.60 5.29 0.07 -13.21 16 14 N -0.61 -12.54 2.44 -182.19 -0.44 -12.99 16 15 C 0.24 5.43 4.97 -5.20 -0.03 5.40 16 16 C -0.54 -13.38 9.39 -34.44 -0.32 -13.70 16 17 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 18 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 20 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.19 3.43 5.71 -5.20 -0.03 3.40 16 25 C 0.12 2.05 6.36 -82.59 -0.53 1.53 16 26 C -0.16 -2.36 9.72 -39.44 -0.38 -2.74 16 27 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 28 C -0.18 -2.25 10.11 -39.44 -0.40 -2.64 16 29 C 0.09 1.33 11.18 -17.55 -0.20 1.14 16 30 N -0.46 -8.20 10.27 -9.47 -0.10 -8.30 16 31 C -0.11 -2.04 8.29 -39.39 -0.33 -2.37 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.60 7.62 -52.48 -0.40 1.20 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.42 8.22 6.51 -40.82 -0.27 7.96 16 42 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 43 H 0.03 0.67 6.29 -51.93 -0.33 0.34 16 44 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.10 1.63 7.97 -51.93 -0.41 1.22 16 46 H 0.09 1.75 7.42 -51.93 -0.39 1.36 16 47 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 48 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 50 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 51 H 0.14 2.65 6.41 -52.49 -0.34 2.31 16 LS Contribution 429.17 15.07 6.47 6.47 Total: -1.00 -30.34 429.17 -10.48 -40.81 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -7.53 Total: 13.39 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.25 Total: 0.45 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.12 Total: -57.62 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.26 Total: -18.51 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -30.34 -10.48 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089905241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.247 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds