Wall clock time and date at job start Tue Mar 31 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00188 * 2 1 4 4 H 1.09000 * 109.46830 * 329.99468 * 3 2 1 5 5 C 1.52998 * 109.47361 * 89.99393 * 3 2 1 6 6 C 1.50698 * 109.47491 * 210.00029 * 3 2 1 7 7 C 1.38308 * 119.96114 * 325.01541 * 6 3 2 8 8 C 1.38259 * 120.13955 * 179.97438 * 7 6 3 9 9 C 1.38141 * 120.06939 * 359.74812 * 8 7 6 10 10 C 1.38844 * 119.92860 * 0.50462 * 9 8 7 11 11 N 1.39941 * 120.07261 * 179.76683 * 10 9 8 12 12 C 1.34779 * 119.99745 * 326.57809 * 11 10 9 13 13 O 1.21582 * 120.00322 * 354.63623 * 12 11 10 14 14 N 1.34779 * 119.99756 * 174.63775 * 12 11 10 15 15 C 1.46503 * 120.00022 * 359.97438 * 14 12 11 16 16 C 1.50697 * 109.47060 * 90.00305 * 15 14 12 17 17 H 1.08001 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99776 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46750 * 89.99944 * 20 18 16 22 22 H 1.48493 * 109.47179 * 210.00344 * 20 18 16 23 23 H 1.48503 * 109.47171 * 330.00770 * 20 18 16 24 24 C 1.46496 * 119.99913 * 179.97438 * 14 12 11 25 25 C 1.50694 * 109.47537 * 269.99872 * 24 14 12 26 26 C 1.38670 * 120.42078 * 269.72362 * 25 24 14 27 27 C 1.38626 * 118.41892 * 179.78090 * 26 25 24 28 28 C 1.38222 * 119.16423 * 0.51440 * 27 26 25 29 29 N 1.31855 * 120.76234 * 359.72157 * 28 27 26 30 30 C 1.31887 * 121.72711 * 0.02562 * 29 28 27 31 31 C 1.38093 * 119.97036 * 144.99373 * 6 3 2 32 32 H 1.08997 * 109.47257 * 300.00307 * 1 2 3 33 33 H 1.09007 * 109.46878 * 60.00428 * 1 2 3 34 34 H 1.08999 * 109.46971 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47019 * 60.00783 * 5 3 2 36 36 H 1.09003 * 109.47156 * 180.02562 * 5 3 2 37 37 H 1.08991 * 109.47289 * 300.00575 * 5 3 2 38 38 H 1.07997 * 119.92961 * 359.96472 * 7 6 3 39 39 H 1.07997 * 119.96747 * 180.02562 * 8 7 6 40 40 H 1.08001 * 120.03719 * 180.25930 * 9 8 7 41 41 H 0.97000 * 120.00177 * 146.56833 * 11 10 9 42 42 H 1.08998 * 109.47091 * 210.00002 * 15 14 12 43 43 H 1.09003 * 109.47027 * 329.99814 * 15 14 12 44 44 H 0.97005 * 119.99484 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.47388 * 30.00135 * 24 14 12 46 46 H 1.09004 * 109.47128 * 149.99540 * 24 14 12 47 47 H 1.08004 * 120.78802 * 0.02562 * 26 25 24 48 48 H 1.08010 * 120.41697 * 180.21864 * 27 26 25 49 49 H 1.07997 * 119.62066 * 179.75375 * 28 27 26 50 50 H 1.07998 * 119.61546 * 179.97438 * 30 29 28 51 51 H 1.07996 * 120.03318 * 0.02562 * 31 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 6 4.1437 0.1443 -0.6047 8 6 5.3630 0.1021 -1.2553 9 6 5.7783 1.1767 -2.0175 10 6 4.9747 2.3042 -2.1214 11 7 5.3948 3.3964 -2.8888 12 6 6.7054 3.7009 -2.9668 13 8 7.5128 3.0889 -2.2947 14 7 7.1210 4.6840 -3.7899 15 6 6.1481 5.4211 -4.6002 16 6 5.6569 6.6189 -3.8289 17 1 6.0316 6.8116 -2.8345 18 6 4.7292 7.4689 -4.3929 19 7 4.2727 7.2339 -5.6036 20 14 4.1197 8.9533 -3.4366 21 1 4.9939 10.1192 -3.7225 22 1 2.7268 9.2671 -3.8445 23 1 4.1542 8.6537 -1.9825 24 6 8.5454 5.0154 -3.8743 25 6 8.8763 6.0741 -2.8542 26 6 8.7903 7.4182 -3.1841 27 6 9.0997 8.3572 -2.2123 28 6 9.4912 7.9254 -0.9589 29 7 9.5665 6.6385 -0.6820 30 6 9.2749 5.7176 -1.5800 31 6 3.7506 2.3435 -1.4666 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 2.8829 1.0777 1.9563 36 1 2.6605 2.7674 1.4424 37 1 1.2568 1.8015 1.9562 38 1 3.8195 -0.6986 -0.0125 39 1 5.9892 -0.7737 -1.1712 40 1 6.7289 1.1414 -2.5290 41 1 4.7427 3.9342 -3.3647 42 1 6.6220 5.7531 -5.5239 43 1 5.3058 4.7710 -4.8372 44 1 3.6197 7.8317 -6.0002 45 1 9.1386 4.1225 -3.6766 46 1 8.7731 5.3890 -4.8726 47 1 8.4857 7.7263 -4.1734 48 1 9.0403 9.4127 -2.4332 49 1 9.7378 8.6505 -0.1975 50 1 9.3486 4.6729 -1.3164 51 1 3.1215 3.2175 -1.5487 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089905243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:56 Heat of formation + Delta-G solvation = -6.862505 kcal Electronic energy + Delta-G solvation = -33603.658913 eV Core-core repulsion = 29275.373750 eV Total energy + Delta-G solvation = -4328.285163 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.38202 -39.67583 -38.97710 -37.63657 -35.43414 -34.40311 -32.92413 -32.50913 -31.97986 -31.17615 -29.60887 -28.69406 -27.66385 -26.84130 -25.75057 -23.70370 -23.25826 -22.94737 -22.30827 -21.81573 -20.84429 -19.06915 -17.80961 -16.99762 -16.79619 -16.57400 -16.54849 -15.90724 -15.72932 -15.43391 -15.29633 -15.06888 -14.75421 -14.65871 -14.35720 -13.92967 -13.55727 -13.34533 -13.28518 -13.12235 -12.92183 -12.77786 -12.63811 -12.54735 -12.46193 -12.02669 -12.00781 -11.88474 -11.60708 -11.36572 -11.27749 -11.14625 -11.11163 -10.86150 -10.67470 -10.37839 -10.00251 -9.91531 -9.75913 -9.47131 -9.26679 -9.04572 -8.72464 -8.58541 -8.53007 -7.99336 -7.55810 -6.31803 -4.39410 1.50632 1.59808 1.66153 1.77580 3.12185 3.21006 3.21683 3.28058 3.60347 3.71018 4.16855 4.21152 4.25274 4.63605 4.74096 4.85787 4.95650 5.01471 5.08899 5.15844 5.20740 5.24213 5.28908 5.33833 5.41585 5.47770 5.49345 5.53107 5.57840 5.61318 5.70661 5.73440 5.84690 5.96890 5.99884 6.09018 6.10905 6.19414 6.22838 6.52374 6.58851 6.63693 6.66478 6.77603 6.78386 6.91893 6.95157 7.13572 7.15340 7.23537 7.43418 7.62804 7.64879 7.89670 8.38775 8.42571 8.72253 9.13037 9.30366 10.74234 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.003008 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.372156 B = 9306.859613 C =10722.228593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.129 3.871 4 H 0.069 0.931 5 C -0.168 4.168 6 C -0.071 4.071 7 C -0.121 4.121 8 C -0.104 4.104 9 C -0.121 4.121 10 C 0.185 3.815 11 N -0.682 5.682 12 C 0.711 3.289 13 O -0.600 6.600 14 N -0.606 5.606 15 C 0.237 3.763 16 C -0.536 4.536 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.182 3.818 25 C -0.144 4.144 26 C -0.035 4.035 27 C -0.183 4.183 28 C 0.088 3.912 29 N -0.496 5.496 30 C 0.116 3.884 31 C -0.146 4.146 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.419 0.581 42 H 0.040 0.960 43 H 0.032 0.968 44 H 0.266 0.734 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.146 0.854 50 H 0.155 0.845 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 -7.803 5.725 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.072 3.928 4 H 0.087 0.913 5 C -0.226 4.226 6 C -0.072 4.072 7 C -0.141 4.141 8 C -0.123 4.123 9 C -0.142 4.142 10 C 0.089 3.911 11 N -0.330 5.330 12 C 0.413 3.587 13 O -0.480 6.480 14 N -0.339 5.339 15 C 0.117 3.883 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.135 4.135 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.058 3.942 25 C -0.147 4.147 26 C -0.062 4.062 27 C -0.203 4.203 28 C -0.069 4.069 29 N -0.205 5.205 30 C -0.041 4.041 31 C -0.167 4.167 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.258 0.742 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.155 0.845 48 H 0.146 0.854 49 H 0.163 0.837 50 H 0.173 0.827 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.280 -8.512 6.785 10.889 hybrid contribution -1.486 2.072 -0.636 2.628 sum -1.766 -6.439 6.149 9.077 Atomic orbital electron populations 1.22775 0.81273 1.02596 0.99938 1.87922 1.19350 1.27543 1.95116 1.20852 0.91948 0.84716 0.95296 0.91327 1.22250 1.02128 1.02283 0.95907 1.19309 0.95206 0.94604 0.98109 1.20790 0.94125 0.97940 1.01198 1.20980 0.96020 0.98093 0.97225 1.21224 1.00734 0.91456 1.00774 1.17468 0.93826 0.86892 0.92961 1.42890 1.08035 1.30965 1.51137 1.15761 0.81931 0.80667 0.80296 1.90820 1.53039 1.56191 1.47932 1.47434 1.07628 1.35307 1.43546 1.19419 0.86838 0.91206 0.90792 1.21494 1.24365 1.09313 1.02283 0.91990 1.24904 0.95914 0.97847 0.94822 1.69912 1.30533 1.38032 1.14245 0.86596 0.78228 0.82934 0.80436 1.20387 1.21047 1.19847 1.20006 0.81652 0.95829 0.96740 1.21271 1.00343 0.95733 0.97377 1.21535 0.92347 0.92184 1.00102 1.22060 1.02525 1.00640 0.95058 1.22624 0.96298 0.92671 0.95331 1.67674 1.15522 1.01940 1.35361 1.22762 0.93502 0.99115 0.88751 1.20625 0.97673 0.99260 0.99141 0.94190 0.93962 0.89730 0.91523 0.91166 0.92442 0.86022 0.86118 0.84663 0.74173 0.94153 0.95014 0.92432 0.89681 0.89779 0.84518 0.85446 0.83654 0.82733 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.54 9.49 -35.23 -0.33 -4.87 16 3 C 0.13 1.55 2.93 -27.88 -0.08 1.47 16 4 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 5 C -0.17 -1.81 9.51 37.16 0.35 -1.46 16 6 C -0.07 -1.01 5.00 -104.65 -0.52 -1.54 16 7 C -0.12 -1.69 9.35 -39.55 -0.37 -2.06 16 8 C -0.10 -1.50 10.04 -39.61 -0.40 -1.89 16 9 C -0.12 -2.02 8.65 -39.39 -0.34 -2.36 16 10 C 0.19 3.22 6.28 -83.69 -0.53 2.69 16 11 N -0.68 -12.79 5.17 -14.23 -0.07 -12.87 16 12 C 0.71 14.26 8.01 -86.91 -0.70 13.56 16 13 O -0.60 -12.65 13.18 5.29 0.07 -12.58 16 14 N -0.61 -11.75 2.44 -182.19 -0.44 -12.19 16 15 C 0.24 5.10 4.92 -5.19 -0.03 5.07 16 16 C -0.54 -12.74 8.86 -34.44 -0.31 -13.04 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -22.82 13.29 55.43 0.74 -22.08 16 20 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.18 3.08 5.60 -5.20 -0.03 3.05 16 25 C -0.14 -2.53 5.48 -104.48 -0.57 -3.10 16 26 C -0.04 -0.60 9.12 -39.28 -0.36 -0.95 16 27 C -0.18 -2.86 10.11 -39.44 -0.40 -3.26 16 28 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 29 N -0.50 -9.04 10.36 -13.25 -0.14 -9.17 16 30 C 0.12 2.12 10.86 -17.55 -0.19 1.92 16 31 C -0.15 -2.27 9.59 -39.39 -0.38 -2.65 16 32 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 33 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.52 7.87 -51.93 -0.41 0.12 16 38 H 0.12 1.54 7.62 -52.49 -0.40 1.14 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.14 2.39 6.42 -52.49 -0.34 2.05 16 41 H 0.42 7.92 6.63 -40.82 -0.27 7.65 16 42 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 43 H 0.03 0.71 6.45 -51.93 -0.33 0.38 16 44 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.08 1.37 7.37 -51.93 -0.38 0.99 16 46 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 47 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 48 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 49 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 50 H 0.16 2.85 7.61 -52.49 -0.40 2.45 16 51 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 426.56 15.07 6.43 6.43 Total: -1.00 -28.62 426.56 -10.31 -38.94 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.50 Total: 14.04 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.04 Total: -0.39 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.08 Total: -56.31 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.26 Total: -17.45 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -28.62 -10.31 -38.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089905243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.073 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds