Wall clock time and date at job start Tue Mar 31 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 120.00139 * 2 1 4 4 C 1.50699 * 109.47092 * 269.99758 * 3 2 1 5 5 H 1.07999 * 120.00088 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99931 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99616 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00052 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46845 * 89.99757 * 8 6 4 10 10 H 1.48501 * 109.46939 * 209.99555 * 8 6 4 11 11 H 1.48493 * 109.47010 * 329.99630 * 8 6 4 12 12 C 1.34778 * 119.99737 * 179.97438 * 2 1 3 13 13 O 1.21585 * 119.99849 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00149 * 0.02562 * 12 2 1 15 15 C 1.40125 * 120.00237 * 184.35401 * 14 12 2 16 16 C 1.38848 * 120.00760 * 324.85180 * 15 14 12 17 17 C 1.38078 * 119.98736 * 180.02562 * 16 15 14 18 18 C 1.38751 * 120.00980 * 0.25558 * 17 16 15 19 19 O 1.35958 * 119.98613 * 179.74664 * 18 17 16 20 20 C 1.35690 * 117.99605 * 255.48041 * 19 18 17 21 21 C 1.38620 * 120.14094 * 355.17976 * 20 19 18 22 22 C 1.38152 * 120.15637 * 179.97438 * 21 20 19 23 23 C 1.38422 * 120.43143 * 359.97438 * 22 21 20 24 24 C 1.38137 * 120.27433 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.07657 * 180.02562 * 24 23 22 26 26 C 1.39956 * 119.83913 * 359.73311 * 24 23 22 27 27 C 1.43194 * 120.21447 * 180.27537 * 26 24 23 28 28 N 9.61741 * 146.30945 * 169.65963 * 12 1 2 29 29 C 1.38744 * 120.02170 * 359.49300 * 18 17 16 30 30 C 1.38077 * 120.01385 * 0.50790 * 29 18 17 31 31 H 1.09001 * 109.47131 * 270.00745 * 1 2 3 32 32 H 1.09001 * 109.46840 * 30.00034 * 1 2 3 33 33 H 1.08999 * 109.47325 * 149.99925 * 1 2 3 34 34 H 1.09003 * 109.47395 * 29.99814 * 3 2 1 35 35 H 1.09000 * 109.47315 * 149.99740 * 3 2 1 36 36 H 0.97001 * 119.99563 * 180.02562 * 7 6 4 37 37 H 0.97002 * 119.99755 * 4.35143 * 14 12 2 38 38 H 1.08001 * 120.00586 * 0.02562 * 16 15 14 39 39 H 1.08000 * 119.99670 * 179.97438 * 17 16 15 40 40 H 1.08004 * 119.92344 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.78495 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.85616 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.99127 * 180.25123 * 29 18 17 44 44 H 1.07999 * 120.00627 * 179.76752 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1262 2.8779 -1.6727 7 7 3.3458 3.2572 -2.9127 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5080 0.1230 10 1 3.7480 5.3559 -0.6645 11 1 2.8272 3.7592 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1673 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1625 -3.5462 0.0932 16 6 3.4041 -3.6809 -0.5135 17 6 4.0908 -4.8754 -0.4224 18 6 3.5379 -5.9426 0.2708 19 8 4.2122 -7.1201 0.3559 20 6 3.7889 -8.1536 -0.4148 21 6 2.6412 -8.0256 -1.1816 22 6 2.2102 -9.0774 -1.9668 23 6 2.9183 -10.2664 -1.9963 24 6 4.0644 -10.4134 -1.2393 25 9 4.7528 -11.5754 -1.2715 26 6 4.5141 -9.3534 -0.4436 27 6 5.7044 -9.4949 0.3397 28 7 6.6491 -9.6069 0.9619 29 6 2.2996 -5.8068 0.8817 30 6 1.6120 -4.6128 0.7911 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.6085 2.0284 0.5138 35 1 3.1500 1.1384 0.5139 36 1 3.8227 4.0831 -3.0900 37 1 0.4971 -2.3356 -0.0636 38 1 3.8327 -2.8516 -1.0566 39 1 5.0564 -4.9805 -0.8946 40 1 2.0825 -7.1014 -1.1651 41 1 1.3150 -8.9713 -2.5615 42 1 2.5728 -11.0828 -2.6131 43 1 1.8715 -6.6365 1.4246 44 1 0.6464 -4.5084 1.2635 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095409751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:24 Heat of formation + Delta-G solvation = 7.312576 kcal Electronic energy + Delta-G solvation = -31160.611874 eV Core-core repulsion = 26573.647989 eV Total energy + Delta-G solvation = -4586.963885 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.56507 -41.47652 -40.33718 -38.89623 -37.64366 -36.67172 -35.19295 -34.41276 -32.56066 -31.88548 -31.27296 -30.61405 -29.27955 -28.11961 -26.09101 -24.61904 -24.13797 -23.25798 -22.73559 -21.62772 -19.93319 -19.62402 -19.00398 -18.16216 -17.69433 -17.16581 -17.05421 -16.85045 -16.51494 -16.04359 -15.67026 -15.53278 -15.17963 -15.02366 -14.41566 -14.31614 -14.01777 -13.85366 -13.64297 -13.63509 -13.54924 -13.40195 -13.17287 -13.00899 -12.91810 -12.64287 -12.47802 -12.20890 -12.19915 -12.17422 -11.93643 -11.58228 -11.21251 -11.04427 -10.59906 -10.31388 -10.15644 -9.70127 -9.51367 -9.48701 -9.15385 -8.96257 -8.65496 -8.21441 -7.79607 -6.15431 -4.14989 0.10859 0.57156 0.83890 1.16185 2.35032 2.46082 2.52762 2.87845 3.24010 3.24951 3.30710 3.33324 3.35094 3.38637 3.69667 3.78098 4.19760 4.25979 4.33575 4.39244 4.41674 4.64282 4.67596 4.70894 5.09216 5.13423 5.16668 5.24439 5.28781 5.36487 5.40324 5.50015 5.64198 5.67723 5.72198 5.80565 5.94347 6.05789 6.13181 6.17659 6.41156 6.46248 6.76558 6.80569 7.08591 7.10456 7.22329 7.30550 7.52688 8.26045 8.39023 8.86045 8.95376 9.44180 10.97734 Molecular weight = 369.13amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.001751 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.732130 B =15989.869629 C =16410.780391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.230 3.770 4 C -0.532 4.532 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.700 3.300 13 O -0.565 6.565 14 N -0.695 5.695 15 C 0.192 3.808 16 C -0.106 4.106 17 C -0.089 4.089 18 C 0.037 3.963 19 O -0.241 6.241 20 C 0.203 3.797 21 C -0.207 4.207 22 C -0.020 4.020 23 C -0.190 4.190 24 C 0.181 3.819 25 F -0.122 7.122 26 C -0.096 4.096 27 C 0.259 3.741 28 N -0.402 5.402 29 C -0.108 4.108 30 C -0.143 4.143 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.405 0.595 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.134 0.866 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 -25.157 3.317 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C 0.109 3.891 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.401 3.599 13 O -0.441 6.441 14 N -0.344 5.344 15 C 0.095 3.905 16 C -0.127 4.127 17 C -0.108 4.108 18 C -0.006 4.006 19 O -0.151 6.151 20 C 0.155 3.845 21 C -0.226 4.226 22 C -0.039 4.039 23 C -0.209 4.209 24 C 0.159 3.841 25 F -0.100 7.100 26 C -0.102 4.102 27 C -0.057 4.057 28 N -0.077 5.077 29 C -0.127 4.127 30 C -0.164 4.164 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.242 0.758 38 H 0.175 0.825 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.791 -25.038 4.321 26.576 hybrid contribution -0.543 0.622 0.285 0.873 sum -8.334 -24.416 4.605 26.207 Atomic orbital electron populations 1.21647 0.80998 1.02926 1.00592 1.47152 1.05934 1.05684 1.75204 1.19655 0.92309 0.78634 0.98500 1.21313 1.37299 1.07235 0.91205 0.90747 1.24853 0.95180 0.97339 0.95610 1.69893 1.41246 1.23569 1.18653 0.86852 0.80208 0.79807 0.82815 1.19833 1.21027 1.19069 1.15864 0.85519 0.80049 0.78423 1.90904 1.11278 1.85414 1.56504 1.43022 1.10201 1.03539 1.77666 1.17715 0.93105 0.85097 0.94568 1.21465 0.94441 0.97662 0.99104 1.21159 1.00529 0.92101 0.97056 1.18539 0.93884 0.84237 1.03913 1.84478 1.54256 1.17919 1.58402 1.18883 0.90994 0.85955 0.88651 1.21464 0.97735 1.02296 1.01114 1.21061 0.98008 0.90559 0.94255 1.21035 0.95682 1.00739 1.03448 1.17235 0.90953 0.80466 0.95398 1.91572 1.78457 1.45243 1.94735 1.15105 0.94928 0.94449 1.05676 1.24970 0.92644 0.94435 0.93611 1.81254 1.10664 1.06679 1.09115 1.21078 0.93583 0.98423 0.99617 1.20715 1.01865 0.92807 1.00997 0.93381 0.89893 0.92801 0.94892 0.94287 0.92480 0.75771 0.82531 0.84653 0.83165 0.83549 0.83333 0.84850 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.24 59.85 0.61 1.70 16 2 N -0.61 -11.47 2.86 -188.74 -0.54 -12.01 16 3 C 0.23 5.31 4.23 -5.20 -0.02 5.29 16 4 C -0.53 -14.63 9.94 -34.44 -0.34 -14.97 16 5 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 8 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 12 C 0.70 13.24 8.12 -86.92 -0.71 12.53 16 13 O -0.57 -13.01 13.36 5.29 0.07 -12.94 16 14 N -0.69 -9.38 5.22 -14.19 -0.07 -9.45 16 15 C 0.19 2.44 6.30 -83.62 -0.53 1.91 16 16 C -0.11 -1.50 8.69 -39.41 -0.34 -1.85 16 17 C -0.09 -1.08 9.98 -39.45 -0.39 -1.47 16 18 C 0.04 0.39 4.65 -39.20 -0.18 0.21 16 19 O -0.24 -2.67 9.42 -3.15 -0.03 -2.70 16 20 C 0.20 1.82 6.63 -38.69 -0.26 1.56 16 21 C -0.21 -1.34 8.93 -39.47 -0.35 -1.69 16 22 C -0.02 -0.09 10.03 -39.55 -0.40 -0.48 16 23 C -0.19 -0.93 10.01 -39.55 -0.40 -1.32 16 24 C 0.18 1.38 7.28 -38.98 -0.28 1.09 16 25 F -0.12 -1.06 16.81 2.25 0.04 -1.02 16 26 C -0.10 -0.91 5.76 -106.58 -0.61 -1.52 16 27 C 0.26 3.16 14.52 -22.45 -0.33 2.83 16 28 N -0.40 -5.77 18.54 41.86 0.78 -5.00 16 29 C -0.11 -0.97 8.46 -39.45 -0.33 -1.30 16 30 C -0.14 -1.33 9.96 -39.42 -0.39 -1.72 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 33 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 34 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.40 4.01 6.52 -40.82 -0.27 3.75 16 38 H 0.16 2.70 6.23 -52.49 -0.33 2.37 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.15 0.90 6.02 -52.48 -0.32 0.59 16 41 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 42 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -35.27 389.50 -7.64 -42.91 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.51 Total: 1.40 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -5.35 Total: 2.77 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.94 Total: -52.54 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.04 Total: -15.64 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.27 -7.64 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.225 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds