Wall clock time and date at job start Tue Mar 31 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99931 * 2 1 4 4 H 1.48502 * 109.47186 * 270.00331 * 3 2 1 5 5 H 1.48494 * 109.47338 * 30.00539 * 3 2 1 6 6 H 1.48501 * 109.47115 * 150.00216 * 3 2 1 7 7 C 1.37875 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00273 * 359.72071 * 7 2 1 10 10 C 1.52998 * 109.46926 * 180.27574 * 9 7 2 11 11 S 1.81404 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.42091 * 110.54543 * 291.62670 * 11 10 9 13 13 O 1.42101 * 110.54065 * 68.37861 * 11 10 9 14 14 N 1.65605 * 104.44858 * 179.97438 * 11 10 9 15 15 C 1.47425 * 125.65059 * 275.25248 * 14 11 10 16 16 C 1.54688 * 104.93974 * 204.07271 * 15 14 11 17 17 C 1.55163 * 101.67961 * 323.27801 * 16 15 14 18 18 C 1.47025 * 125.64348 * 95.56016 * 14 11 10 19 19 H 1.08996 * 109.88414 * 59.33345 * 18 14 11 20 20 C 1.52995 * 109.88342 * 298.32130 * 18 14 11 21 21 C 1.50708 * 109.47064 * 174.38682 * 20 18 14 22 22 O 1.21272 * 119.99960 * 354.53061 * 21 20 18 23 23 C 1.47009 * 120.00073 * 174.53202 * 21 20 18 24 24 C 1.39947 * 120.14348 * 359.72177 * 23 21 20 25 25 C 1.37749 * 119.85085 * 179.69567 * 24 23 21 26 26 C 1.38719 * 120.14504 * 0.58702 * 25 24 23 27 27 F 1.35098 * 119.85594 * 179.69375 * 26 25 24 28 28 C 1.38722 * 120.29085 * 359.71095 * 26 25 24 29 29 C 1.37746 * 120.15131 * 359.97438 * 28 26 25 30 30 H 0.97004 * 119.99710 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47013 * 300.27394 * 9 7 2 32 32 H 1.08996 * 109.47204 * 60.27647 * 9 7 2 33 33 H 1.08997 * 109.47128 * 299.99750 * 10 9 7 34 34 H 1.09003 * 109.46945 * 60.00347 * 10 9 7 35 35 H 1.08995 * 110.36728 * 323.00323 * 15 14 11 36 36 H 1.08997 * 110.36261 * 85.32860 * 15 14 11 37 37 H 1.09002 * 111.09965 * 205.10928 * 16 15 14 38 38 H 1.09002 * 110.84669 * 81.33924 * 16 15 14 39 39 H 1.08998 * 110.71874 * 276.97433 * 17 16 15 40 40 H 1.08997 * 110.71857 * 153.69892 * 17 16 15 41 41 H 1.09003 * 109.47430 * 294.38522 * 20 18 14 42 42 H 1.08999 * 109.47390 * 54.39115 * 20 18 14 43 43 H 1.07995 * 120.07279 * 0.02562 * 24 23 21 44 44 H 1.07993 * 119.92993 * 180.30323 * 25 24 23 45 45 H 1.08005 * 119.92314 * 180.02562 * 28 26 25 46 46 H 1.07996 * 120.07499 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 0.0052 10 6 2.2453 -3.6620 0.0103 11 16 1.3382 -5.2330 0.0180 12 8 0.6647 -5.4138 1.2560 13 8 0.6638 -5.4254 -1.2179 14 7 2.5204 -6.3927 0.0223 15 6 3.2097 -6.9214 -1.1688 16 6 3.7122 -8.3230 -0.7495 17 6 4.1102 -8.0840 0.7311 18 6 3.0519 -7.0700 1.2141 19 1 2.2476 -7.5898 1.7347 20 6 3.7002 -6.0466 2.1485 21 6 4.1182 -6.7273 3.4265 22 8 3.8295 -7.8896 3.6169 23 6 4.8759 -5.9822 4.4423 24 6 5.2157 -4.6424 4.2232 25 6 5.9203 -3.9482 5.1819 26 6 6.3036 -4.5777 6.3571 27 9 6.9998 -3.8930 7.2906 28 6 5.9753 -5.9073 6.5778 29 6 5.2654 -6.6112 5.6301 30 1 -0.4850 0.8401 0.0004 31 1 0.6245 -2.5530 0.8955 32 1 0.6243 -2.5608 -0.8844 33 1 2.8718 -3.6082 -0.8800 34 1 2.8720 -3.6004 0.9001 35 1 2.5149 -7.0015 -2.0048 36 1 4.0521 -6.2828 -1.4343 37 1 4.5758 -8.6240 -1.3426 38 1 2.9129 -9.0603 -0.8250 39 1 5.1112 -7.6577 0.7972 40 1 4.0458 -9.0102 1.3020 41 1 4.5758 -5.6152 1.6634 42 1 2.9842 -5.2567 2.3751 43 1 4.9214 -4.1524 3.3069 44 1 6.1789 -2.9128 5.0162 45 1 6.2764 -6.3915 7.4951 46 1 5.0102 -7.6462 5.8034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095993971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:35 Heat of formation + Delta-G solvation = -135.225343 kcal Electronic energy + Delta-G solvation = -31473.160726 eV Core-core repulsion = 26983.167133 eV Total energy + Delta-G solvation = -4489.993593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 369.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.31512 -40.51900 -38.88140 -37.91320 -36.68506 -35.48634 -33.96051 -32.54080 -31.44608 -31.22668 -30.97261 -30.85963 -26.86634 -25.65851 -23.98445 -23.29977 -22.29213 -21.54450 -21.22022 -19.94390 -18.65387 -18.12421 -17.66812 -17.00305 -16.75811 -16.48893 -16.17523 -16.00431 -15.56202 -15.40505 -15.07749 -14.95454 -14.61301 -14.56652 -14.03475 -13.84265 -13.60948 -13.47122 -13.45389 -13.27351 -13.08732 -12.75116 -12.56182 -12.43695 -12.15252 -11.81883 -11.67843 -11.60303 -11.42571 -11.41389 -11.22147 -11.13392 -11.04474 -10.93476 -10.83373 -10.47877 -10.43593 -10.07011 -9.80254 -9.57159 -9.36549 -9.13711 -8.80872 -8.55237 -6.17233 -4.23356 0.17793 0.65807 0.83937 2.02164 2.93511 3.22051 3.28357 3.28675 3.30440 3.67795 3.80319 4.19018 4.27607 4.30122 4.33575 4.39952 4.46448 4.55737 4.78245 4.78456 4.81018 4.94359 5.02432 5.11693 5.18034 5.23484 5.40507 5.42439 5.48434 5.50391 5.58517 5.66189 5.67722 5.69827 5.72709 5.78382 5.82284 5.90071 5.93615 6.05287 6.22978 6.39109 6.40253 6.46859 7.23901 7.24371 7.29660 7.75014 8.11488 8.79905 9.41745 10.93735 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.006281 B = 0.003703 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4456.506314 B = 7559.566164 C =11220.036728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.599 3.401 12 O -0.960 6.960 13 O -0.961 6.961 14 N -1.015 6.015 15 C 0.113 3.887 16 C -0.129 4.129 17 C -0.121 4.121 18 C 0.164 3.836 19 H 0.089 0.911 20 C -0.199 4.199 21 C 0.411 3.589 22 O -0.446 6.446 23 C -0.180 4.180 24 C -0.040 4.040 25 C -0.164 4.164 26 C 0.129 3.871 27 F -0.135 7.135 28 C -0.169 4.169 29 C -0.032 4.032 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.035 -15.120 6.909 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.699 3.301 12 O -0.950 6.950 13 O -0.951 6.951 14 N -0.851 5.851 15 C -0.012 4.012 16 C -0.168 4.168 17 C -0.160 4.160 18 C 0.058 3.942 19 H 0.107 0.893 20 C -0.237 4.237 21 C 0.288 3.712 22 O -0.320 6.320 23 C -0.182 4.182 24 C -0.058 4.058 25 C -0.182 4.182 26 C 0.109 3.891 27 F -0.113 7.113 28 C -0.188 4.188 29 C -0.050 4.050 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.723 -15.748 7.028 22.039 hybrid contribution 1.195 1.754 0.255 2.138 sum 14.918 -13.995 7.283 21.712 Atomic orbital electron populations 1.69957 1.06127 1.27256 1.49369 1.25065 0.94955 0.99525 0.94865 0.86483 0.79679 0.82914 0.78278 1.20442 1.20993 1.19769 1.20967 0.92997 0.89661 1.52372 0.92034 1.18969 0.92690 0.90522 0.98922 1.30568 1.13742 1.18055 1.09988 1.05494 0.74302 0.76124 0.74197 1.93543 1.71097 1.85283 1.45091 1.93537 1.70861 1.85108 1.45606 1.59003 1.57701 1.55710 1.12666 1.21984 0.96674 0.94560 0.87976 1.22727 1.01366 0.96713 0.95965 1.22698 0.97843 0.99322 0.96149 1.21014 0.96515 0.91597 0.85079 0.89262 1.22746 1.03872 1.01446 0.95667 1.22068 0.75480 0.87246 0.86423 1.90521 1.45843 1.17598 1.78070 1.20585 1.04505 0.95640 0.97438 1.21467 0.92959 0.92555 0.98853 1.21209 1.01922 1.01881 0.93226 1.18086 0.93378 0.90492 0.87100 1.91531 1.76218 1.79559 1.63995 1.21132 1.02759 0.93075 1.01798 1.21271 0.92487 1.00328 0.90961 0.92475 0.94831 0.94859 0.86093 0.86401 0.89771 0.91563 0.90082 0.90609 0.90878 0.89648 0.87144 0.87267 0.83498 0.83695 0.84090 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.52 -13.80 9.11 -34.44 -0.31 -14.12 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.66 6.12 37.16 0.23 -10.43 16 11 S 2.60 46.44 5.14 -107.50 -0.55 45.89 16 12 O -0.96 -19.59 17.00 -57.54 -0.98 -20.57 16 13 O -0.96 -20.00 17.38 -57.54 -1.00 -21.00 16 14 N -1.02 -13.59 3.32 -104.55 -0.35 -13.94 16 15 C 0.11 1.21 7.10 -2.65 -0.02 1.19 16 16 C -0.13 -1.10 7.07 -24.70 -0.17 -1.28 16 17 C -0.12 -1.11 5.59 -24.89 -0.14 -1.25 16 18 C 0.16 1.96 2.35 -66.95 -0.16 1.81 16 19 H 0.09 1.22 7.83 -51.93 -0.41 0.82 16 20 C -0.20 -2.11 3.87 -27.88 -0.11 -2.22 16 21 C 0.41 4.45 6.84 -30.75 -0.21 4.24 16 22 O -0.45 -5.63 15.03 5.56 0.08 -5.55 16 23 C -0.18 -1.76 5.87 -105.07 -0.62 -2.37 16 24 C -0.04 -0.36 9.45 -39.12 -0.37 -0.73 16 25 C -0.16 -1.44 10.01 -39.58 -0.40 -1.84 16 26 C 0.13 1.19 7.31 -39.23 -0.29 0.90 16 27 F -0.13 -1.34 17.26 2.25 0.04 -1.30 16 28 C -0.17 -1.39 10.01 -39.58 -0.40 -1.78 16 29 C -0.03 -0.29 9.59 -39.12 -0.38 -0.66 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.95 8.14 -51.93 -0.42 1.52 16 34 H 0.12 1.81 7.41 -51.92 -0.38 1.42 16 35 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.57 7.76 -51.93 -0.40 0.16 16 40 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 41 H 0.11 0.86 7.71 -51.93 -0.40 0.46 16 42 H 0.11 1.27 6.59 -51.93 -0.34 0.93 16 43 H 0.15 1.09 6.95 -52.49 -0.36 0.73 16 44 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -34.83 398.45 -11.04 -45.87 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.43 Total: 0.66 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -3.57 Total: -26.47 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.39 Total: -39.09 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.89 Total: -47.12 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 46.44 SS G_CDS: -0.55 Total: 45.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.83 -11.04 -45.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095993971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.353 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds