Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39732 * 125.77224 * 2 1 4 4 C 1.36161 * 107.85281 * 180.16398 * 3 2 1 5 5 N 1.39342 * 126.26158 * 179.84140 * 4 3 2 6 6 C 1.34776 * 120.00197 * 359.69483 * 5 4 3 7 7 O 1.21717 * 119.99536 * 0.02562 * 6 5 4 8 8 C 1.46369 * 120.00136 * 179.97438 * 6 5 4 9 9 C 1.34836 * 120.00330 * 187.08375 * 8 6 5 10 10 C 1.47212 * 119.99560 * 10.96388 * 9 8 6 11 11 C 1.39873 * 120.14786 * 46.28754 * 10 9 8 12 12 C 1.37889 * 119.94086 * 180.27351 * 11 10 9 13 13 C 1.38338 * 120.23176 * 359.75164 * 12 11 10 14 14 C 1.38860 * 120.28771 * 359.97263 * 13 12 11 15 15 O 1.35915 * 119.97256 * 179.97438 * 14 13 12 16 16 C 1.42898 * 116.99544 * 355.99978 * 15 14 13 17 17 C 1.53005 * 109.46954 * 156.50072 * 16 15 14 18 18 C 1.53000 * 109.47375 * 276.50401 * 16 15 14 19 19 C 1.38419 * 120.05991 * 0.02562 * 14 13 12 20 20 N 1.35815 * 107.47173 * 359.58547 * 4 3 2 21 21 C 1.46502 * 126.09676 * 180.24140 * 20 4 3 22 22 C 1.50694 * 109.47008 * 89.99397 * 21 20 4 23 23 H 1.08003 * 120.00312 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99980 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99958 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00130 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47323 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47405 * 119.99994 * 26 24 22 29 29 H 1.48502 * 109.47068 * 239.99900 * 26 24 22 30 30 N 1.30828 * 125.77738 * 179.69793 * 2 1 3 31 31 H 1.09002 * 109.46959 * 270.27432 * 1 2 3 32 32 H 1.08997 * 109.47767 * 30.27835 * 1 2 3 33 33 H 1.08998 * 109.47174 * 150.28314 * 1 2 3 34 34 H 1.07992 * 126.07116 * 0.04577 * 3 2 1 35 35 H 0.96998 * 119.99453 * 179.68903 * 5 4 3 36 36 H 1.08007 * 119.99960 * 7.08074 * 8 6 5 37 37 H 1.07998 * 120.00131 * 190.96249 * 9 8 6 38 38 H 1.08004 * 120.02780 * 0.02562 * 11 10 9 39 39 H 1.08002 * 119.89068 * 179.72433 * 12 11 10 40 40 H 1.08003 * 119.85636 * 179.97438 * 13 12 11 41 41 H 1.09005 * 109.47478 * 36.50022 * 16 15 14 42 42 H 1.08993 * 109.46997 * 60.00171 * 17 16 15 43 43 H 1.09007 * 109.46709 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.47004 * 300.00086 * 17 16 15 45 45 H 1.09003 * 109.47173 * 180.02562 * 18 16 15 46 46 H 1.09003 * 109.47012 * 300.00077 * 18 16 15 47 47 H 1.08991 * 109.47060 * 59.99900 * 18 16 15 48 48 H 1.08005 * 120.11892 * 179.97438 * 19 14 13 49 49 H 1.08995 * 109.47377 * 209.99964 * 21 20 4 50 50 H 1.09007 * 109.46537 * 330.00045 * 21 20 4 51 51 H 0.97002 * 120.00042 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6194 0.7148 -0.0037 5 7 4.7493 1.5302 -0.0081 6 6 4.6127 2.8711 -0.0151 7 8 3.5023 3.3696 -0.0172 8 6 5.7995 3.7276 -0.0192 9 6 5.6681 5.0626 0.1178 10 6 4.3712 5.6379 0.5107 11 6 3.6481 5.0815 1.5709 12 6 2.4312 5.6203 1.9317 13 6 1.9244 6.7134 1.2519 14 6 2.6369 7.2769 0.2016 15 8 2.1327 8.3504 -0.4622 16 6 0.8271 8.7918 -0.0847 17 6 0.6582 10.2652 -0.4612 18 6 -0.2252 7.9549 -0.8149 19 6 3.8597 6.7457 -0.1706 20 7 3.6088 -0.6433 0.0034 21 6 4.7858 -1.5156 0.0076 22 6 5.1899 -1.8071 1.4298 23 1 4.6262 -1.3852 2.2487 24 6 6.2794 -2.6125 1.6856 25 7 6.9662 -3.1258 0.6885 26 14 6.7800 -2.9744 3.4485 27 1 5.8521 -2.2822 4.3786 28 1 6.7216 -4.4387 3.6890 29 1 8.1645 -2.4897 3.6794 30 7 2.2719 -1.0614 0.0056 31 1 -0.3633 0.0049 1.0277 32 1 -0.3634 0.8874 -0.5181 33 1 -0.3633 -0.8925 -0.5094 34 1 1.9873 2.1599 0.0007 35 1 5.6341 1.1329 -0.0059 36 1 6.7807 3.2904 -0.1318 37 1 6.5141 5.7096 -0.0607 38 1 4.0407 4.2281 2.1038 39 1 1.8715 5.1872 2.7475 40 1 0.9705 7.1303 1.5393 41 1 0.7011 8.6751 0.9917 42 1 0.7841 10.3818 -1.5376 43 1 -0.3376 10.6020 -0.1729 44 1 1.4078 10.8613 0.0590 45 1 -1.2211 8.2919 -0.5273 46 1 -0.0993 8.0715 -1.8913 47 1 -0.1048 6.9054 -0.5467 48 1 4.4145 7.1830 -0.9876 49 1 4.5477 -2.4496 -0.5012 50 1 5.6075 -1.0195 -0.5092 51 1 7.7325 -3.6928 0.8684 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096189934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = 52.544824 kcal Electronic energy + Delta-G solvation = -32914.516945 eV Core-core repulsion = 28588.807877 eV Total energy + Delta-G solvation = -4325.709068 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85732 -40.32465 -39.33117 -37.65909 -34.72065 -33.93850 -33.66251 -33.33785 -32.04199 -30.38030 -29.46757 -29.04325 -28.11173 -27.53868 -26.01634 -24.61111 -23.07366 -22.62343 -22.49148 -21.12576 -20.09875 -19.63820 -18.97856 -17.89343 -16.87101 -16.70147 -16.47555 -16.25402 -15.90017 -15.58366 -15.05480 -14.88544 -14.57430 -14.41538 -14.13181 -13.91860 -13.87230 -13.61608 -13.51251 -12.97917 -12.93588 -12.79923 -12.73754 -12.56106 -12.48996 -12.39913 -12.06638 -11.94941 -11.76651 -11.62231 -11.55051 -11.41781 -11.06052 -11.01931 -10.90358 -10.66354 -10.36469 -10.30496 -9.90240 -9.84746 -9.78763 -9.44295 -8.72954 -8.60547 -7.90824 -7.83045 -7.38331 -6.33672 -4.41894 0.64154 1.53170 1.78153 2.66145 2.93900 3.04602 3.14431 3.23245 3.29015 3.37713 3.73958 3.85075 3.86899 4.24333 4.44951 4.57458 4.61922 4.72820 4.75052 4.88193 4.99694 5.07675 5.15953 5.20391 5.25007 5.32084 5.38567 5.39874 5.43907 5.54369 5.62300 5.65849 5.75460 5.87198 5.88941 5.98502 6.04226 6.08131 6.17870 6.22414 6.31472 6.35050 6.47171 6.48173 6.63219 6.72572 6.77074 6.85752 7.06002 7.40652 7.55260 7.60106 7.67877 7.80297 7.96168 8.38170 8.63672 8.73030 9.25659 10.73432 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.002248 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.939595 B =12454.353528 C =13648.024282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.048 3.952 3 C -0.292 4.292 4 C 0.302 3.698 5 N -0.634 5.634 6 C 0.541 3.459 7 O -0.500 6.500 8 C -0.197 4.197 9 C -0.025 4.025 10 C -0.028 4.028 11 C -0.079 4.079 12 C -0.087 4.087 13 C -0.201 4.201 14 C 0.118 3.882 15 O -0.314 6.314 16 C 0.076 3.924 17 C -0.148 4.148 18 C -0.180 4.180 19 C -0.133 4.133 20 N -0.347 5.347 21 C 0.257 3.743 22 C -0.538 4.538 23 H 0.065 0.935 24 C 0.066 3.934 25 N -0.890 5.890 26 Si 0.906 3.094 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 N -0.285 5.285 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.416 0.584 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.127 0.873 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 23.926 -1.458 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.117 4.117 3 C -0.323 4.323 4 C 0.080 3.920 5 N -0.280 5.280 6 C 0.330 3.670 7 O -0.375 6.375 8 C -0.218 4.218 9 C -0.044 4.044 10 C -0.028 4.028 11 C -0.098 4.098 12 C -0.105 4.105 13 C -0.219 4.219 14 C 0.074 3.926 15 O -0.229 6.229 16 C 0.020 3.980 17 C -0.205 4.205 18 C -0.238 4.238 19 C -0.152 4.152 20 N -0.133 5.133 21 C 0.139 3.861 22 C -0.577 4.577 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.528 5.528 26 Si 0.733 3.267 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 N -0.111 5.111 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.252 0.748 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.145 0.855 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.316 22.933 -1.667 24.129 hybrid contribution 0.918 -0.049 1.014 1.369 sum -6.398 22.884 -0.653 23.771 Atomic orbital electron populations 1.20007 0.87745 1.02237 1.02043 1.22006 0.96449 0.91128 1.02074 1.21270 0.89042 1.00371 1.21656 1.18038 0.88087 0.83233 1.02682 1.42756 1.08198 1.05668 1.71415 1.18379 0.90281 0.81001 0.77361 1.90842 1.26334 1.73060 1.47291 1.22916 0.98074 0.94027 1.06747 1.22350 0.95921 0.94240 0.91927 1.18610 0.94260 0.94188 0.95757 1.20987 0.94568 0.97669 0.96551 1.20723 0.95439 0.95089 0.99224 1.21229 1.01576 1.00285 0.98830 1.18684 0.93568 0.88250 0.92125 1.86098 1.32719 1.44285 1.59820 1.22399 0.81308 0.94894 0.99388 1.21841 1.02355 0.93282 1.02991 1.22361 0.98494 1.01034 1.01868 1.20330 0.95379 0.97331 1.02160 1.49489 1.06386 1.02159 1.55306 1.19606 0.77895 0.89717 0.98857 1.21379 1.13193 1.31717 0.91372 0.91692 1.24943 0.95735 0.94923 0.98179 1.69926 1.19192 1.32593 1.31060 0.86306 0.78337 0.78421 0.83679 1.19575 1.20555 1.20636 1.77319 0.86240 1.21880 1.25623 0.91414 0.91257 0.91625 0.82078 0.74785 0.84216 0.84111 0.86585 0.86054 0.85849 0.90923 0.91510 0.90641 0.91753 0.91190 0.91511 0.91563 0.85531 0.92629 0.93842 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 0.98 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.99 9.58 -39.77 -0.38 -6.37 16 4 C 0.30 6.37 7.68 -152.77 -1.17 5.20 16 5 N -0.63 -11.05 5.41 -12.62 -0.07 -11.12 16 6 C 0.54 8.40 6.83 -12.99 -0.09 8.31 16 7 O -0.50 -8.71 9.47 5.17 0.05 -8.66 16 8 C -0.20 -2.23 9.92 -37.52 -0.37 -2.61 16 9 C -0.02 -0.25 9.79 -37.15 -0.36 -0.62 16 10 C -0.03 -0.35 4.42 -105.08 -0.46 -0.81 16 11 C -0.08 -1.07 6.69 -39.10 -0.26 -1.33 16 12 C -0.09 -1.08 10.02 -39.67 -0.40 -1.48 16 13 C -0.20 -2.34 8.39 -39.31 -0.33 -2.67 16 14 C 0.12 1.46 6.54 -39.28 -0.26 1.20 16 15 O -0.31 -3.60 9.80 -19.47 -0.19 -3.79 16 16 C 0.08 0.64 2.87 -26.73 -0.08 0.56 16 17 C -0.15 -0.92 9.56 37.16 0.36 -0.57 16 18 C -0.18 -1.44 9.28 37.16 0.34 -1.09 16 19 C -0.13 -1.64 9.73 -38.95 -0.38 -2.02 16 20 N -0.35 -8.20 3.62 -61.45 -0.22 -8.42 16 21 C 0.26 6.45 6.02 -5.20 -0.03 6.42 16 22 C -0.54 -14.46 9.39 -34.44 -0.32 -14.79 16 23 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 24 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 26 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 N -0.29 -6.72 12.56 33.64 0.42 -6.29 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.16 3.23 5.82 -52.49 -0.31 2.92 16 35 H 0.42 6.70 7.97 -40.82 -0.33 6.37 16 36 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.63 7.27 -52.48 -0.38 1.25 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.18 5.70 -52.48 -0.30 0.88 16 41 H 0.07 0.56 5.93 -51.93 -0.31 0.25 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.63 7.42 -51.93 -0.39 0.24 16 48 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 49 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 50 H 0.04 1.05 7.52 -51.92 -0.39 0.66 16 51 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 424.08 15.07 6.39 6.39 Total: -1.00 -32.44 424.08 -9.86 -42.30 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.44 Total: 8.69 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -4.51 Total: -11.18 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.87 Total: -49.41 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.14 Total: -12.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -32.44 -9.86 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096189934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.844 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds