Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47439 * 240.00154 * 3 2 1 5 5 H 1.48496 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46828 * 120.00150 * 3 2 1 7 7 C 1.37879 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46762 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.35900 * 117.00355 * 179.97438 * 11 10 9 13 13 C 1.38755 * 120.05433 * 359.73146 * 12 11 10 14 14 C 1.38121 * 119.94497 * 179.73971 * 13 12 11 15 15 C 1.38290 * 120.05332 * 0.51242 * 14 13 12 16 16 C 1.38236 * 120.11280 * 359.76278 * 15 14 13 17 17 C 1.50703 * 119.97426 * 179.97438 * 16 15 14 18 18 N 1.46897 * 109.47224 * 270.02449 * 17 16 15 19 19 C 1.46894 * 110.99896 * 185.79116 * 18 17 16 20 20 H 1.09003 * 108.61365 * 180.54458 * 19 18 17 21 21 C 1.51875 * 108.65946 * 298.57920 * 19 18 17 22 22 C 1.53538 * 108.96847 * 181.50973 * 21 19 18 23 23 S 1.81629 * 107.16799 * 287.13529 * 22 21 19 24 24 C 1.76461 * 102.60669 * 46.47264 * 23 22 21 25 25 C 1.39630 * 117.71739 * 167.24291 * 24 23 22 26 26 C 1.37737 * 120.62916 * 179.28376 * 25 24 23 27 27 C 1.38349 * 119.50848 * 0.02562 * 26 25 24 28 28 C 1.37757 * 120.00790 * 0.27270 * 27 26 25 29 29 C 1.38181 * 122.30174 * 347.02756 * 24 23 22 30 30 C 1.38168 * 120.05544 * 359.97438 * 16 15 14 31 31 H 0.97001 * 119.99945 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47047 * 299.99895 * 9 7 2 33 33 H 1.08993 * 109.47165 * 60.00423 * 9 7 2 34 34 H 1.08995 * 109.47576 * 300.00214 * 10 9 7 35 35 H 1.09003 * 109.47074 * 60.00165 * 10 9 7 36 36 H 1.08002 * 120.02690 * 359.97261 * 13 12 11 37 37 H 1.07997 * 119.97125 * 180.25084 * 14 13 12 38 38 H 1.08001 * 119.94065 * 179.74433 * 15 14 13 39 39 H 1.09002 * 109.46535 * 30.02795 * 17 16 15 40 40 H 1.08996 * 109.46904 * 150.01981 * 17 16 15 41 41 H 1.00894 * 111.00237 * 61.83964 * 18 17 16 42 42 H 1.09002 * 109.54965 * 301.22172 * 21 19 18 43 43 H 1.08995 * 109.55159 * 61.53073 * 21 19 18 44 44 H 1.09002 * 109.92145 * 167.74776 * 22 21 19 45 45 H 1.08995 * 110.04171 * 46.59384 * 22 21 19 46 46 H 1.08002 * 119.68530 * 359.25744 * 25 24 23 47 47 H 1.07999 * 120.24356 * 180.02562 * 26 25 24 48 48 H 1.07997 * 119.98916 * 180.26338 * 27 26 25 49 49 H 1.08001 * 119.46481 * 179.97438 * 28 27 26 50 50 H 1.08000 * 120.02735 * 179.97438 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 8 1.5308 -4.8996 -0.0012 12 6 2.2709 -6.0394 -0.0028 13 6 3.6566 -5.9682 -0.0104 14 6 4.4066 -7.1280 -0.0066 15 6 3.7776 -8.3595 -0.0057 16 6 2.3972 -8.4332 -0.0038 17 6 1.7149 -9.7770 -0.0035 18 7 1.4918 -10.2132 -1.3884 19 6 0.7066 -11.4540 -1.4294 20 1 0.5728 -11.7468 -2.4708 21 6 1.4842 -12.5450 -0.7140 22 6 0.6867 -13.8551 -0.7856 23 16 -0.7233 -13.6869 0.3469 24 6 -1.3516 -12.0877 -0.0551 25 6 -2.6098 -11.7406 0.4411 26 6 -3.1514 -10.5022 0.1764 27 6 -2.4390 -9.5964 -0.5892 28 6 -1.2001 -9.9379 -1.0854 29 6 -0.6423 -11.1886 -0.8283 30 6 1.6424 -7.2759 -0.0022 31 1 -0.4850 0.8401 0.0004 32 1 0.6247 -2.5571 0.8896 33 1 0.6241 -2.5567 -0.8903 34 1 2.8713 -3.6039 -0.8922 35 1 2.8726 -3.6047 0.8877 36 1 4.1483 -5.0066 -0.0157 37 1 5.4852 -7.0730 -0.0084 38 1 4.3658 -9.2653 -0.0069 39 1 2.3446 -10.5039 0.5095 40 1 0.7575 -9.6982 0.5114 41 1 2.3669 -10.3228 -1.8784 42 1 2.4508 -12.6817 -1.1988 43 1 1.6335 -12.2630 0.3281 44 1 1.3148 -14.6897 -0.4743 45 1 0.3286 -14.0193 -1.8018 46 1 -3.1638 -12.4502 1.0378 47 1 -4.1249 -10.2401 0.5637 48 1 -2.8544 -8.6216 -0.7980 49 1 -0.6518 -9.2242 -1.6824 50 1 0.5640 -7.3340 -0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096403299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = 6.390381 kcal Electronic energy + Delta-G solvation = -29720.805972 eV Core-core repulsion = 25803.555618 eV Total energy + Delta-G solvation = -3917.250355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 369.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.30403 -39.64946 -37.79676 -36.87742 -33.70587 -33.33861 -31.39465 -30.99758 -30.90914 -30.39355 -29.13769 -26.73519 -25.10596 -24.44359 -23.48479 -22.85236 -22.36932 -21.73778 -20.58203 -20.11272 -18.04349 -17.62163 -16.61062 -16.24503 -16.16800 -15.97710 -15.69668 -15.60522 -15.31800 -15.07407 -14.85759 -14.54055 -14.19656 -13.86058 -13.79472 -13.63071 -13.28511 -13.22867 -12.93710 -12.84599 -12.70589 -12.61044 -12.31048 -12.00794 -11.88870 -11.50365 -11.43776 -11.37587 -11.22656 -10.98474 -10.85818 -10.73814 -10.48521 -10.43908 -9.91932 -9.86144 -9.66336 -9.31651 -8.99196 -8.86503 -8.64542 -8.44902 -7.85048 -7.71429 -6.10462 -4.15220 0.94318 1.14856 1.23629 1.43911 1.66815 2.01219 3.28318 3.32744 3.34393 3.45309 3.66518 3.83280 4.07248 4.14523 4.19010 4.39092 4.41565 4.69553 4.77025 4.78732 4.84310 4.92283 5.01718 5.08631 5.10583 5.15411 5.22661 5.25765 5.26109 5.37608 5.44949 5.45329 5.51275 5.63301 5.69427 5.80521 5.85203 6.03172 6.04488 6.06158 6.17674 6.22431 6.37370 6.53003 6.56716 6.58537 6.65300 6.72341 6.73485 6.97867 7.02035 7.50387 7.63966 7.81104 8.06521 8.23579 8.90063 9.48955 11.01018 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.001820 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.885178 B =15384.954394 C =16974.084237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.145 3.855 13 C -0.211 4.211 14 C -0.080 4.080 15 C -0.167 4.167 16 C -0.048 4.048 17 C 0.097 3.903 18 N -0.670 5.670 19 C 0.126 3.874 20 H 0.095 0.905 21 C -0.159 4.159 22 C -0.099 4.099 23 S -0.132 6.132 24 C -0.074 4.074 25 C -0.108 4.108 26 C -0.101 4.101 27 C -0.125 4.125 28 C -0.078 4.078 29 C -0.085 4.085 30 C -0.139 4.139 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.349 0.651 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.141 0.859 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 -30.444 -1.893 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.098 3.902 13 C -0.230 4.230 14 C -0.098 4.098 15 C -0.186 4.186 16 C -0.049 4.049 17 C -0.031 4.031 18 N -0.300 5.300 19 C 0.016 3.984 20 H 0.112 0.888 21 C -0.199 4.199 22 C -0.248 4.248 23 S 0.110 5.890 24 C -0.186 4.186 25 C -0.131 4.131 26 C -0.121 4.121 27 C -0.145 4.145 28 C -0.098 4.098 29 C -0.091 4.091 30 C -0.158 4.158 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.168 0.832 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.111 0.889 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.159 0.841 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.313 -30.766 -1.196 30.791 hybrid contribution 1.796 1.339 -0.582 2.315 sum 2.109 -29.427 -1.778 29.556 Atomic orbital electron populations 1.69965 1.06087 1.27082 1.49576 1.24992 0.94915 0.99369 0.94914 0.86546 0.79500 0.82608 0.78706 1.20096 1.21108 1.20107 1.20930 0.92992 0.90233 1.52388 0.92442 1.19114 0.94164 0.88991 0.98865 1.23325 0.97077 0.80862 0.99597 1.86177 1.36532 1.13191 1.86926 1.19200 0.90080 0.87559 0.93320 1.21392 0.93265 0.99815 1.08512 1.20835 0.99317 0.91918 0.97769 1.20748 0.93731 0.97346 1.06733 1.19338 0.92994 0.93678 0.98844 1.20917 1.00227 0.92373 0.89584 1.60604 1.24067 1.30161 1.15149 1.20110 0.90164 0.88448 0.99635 0.88754 1.22451 0.99559 0.94294 1.03618 1.23687 0.97612 1.01429 1.02098 1.85555 1.35623 1.17172 1.50675 1.21297 0.97912 0.96933 1.02499 1.20825 0.93697 0.97498 1.01100 1.21096 0.99887 0.93195 0.97940 1.21252 0.95150 0.99924 0.98139 1.21432 0.94595 0.95525 0.98283 1.19382 0.95480 0.94569 0.99657 1.20238 1.00218 0.89133 1.06231 0.92643 0.95407 0.95393 0.93155 0.93193 0.85307 0.86287 0.86890 0.94005 0.89669 0.83236 0.89805 0.89745 0.87123 0.88923 0.85801 0.85495 0.85440 0.84138 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.41 4.68 37.16 0.17 1.58 16 11 O -0.32 -6.51 10.14 -19.43 -0.20 -6.70 16 12 C 0.15 2.52 6.69 -39.22 -0.26 2.26 16 13 C -0.21 -3.27 9.04 -39.43 -0.36 -3.62 16 14 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 15 C -0.17 -1.92 9.70 -39.56 -0.38 -2.30 16 16 C -0.05 -0.58 5.44 -104.65 -0.57 -1.15 16 17 C 0.10 0.94 4.87 -4.98 -0.02 0.92 16 18 N -0.67 -5.57 5.17 -110.18 -0.57 -6.14 16 19 C 0.13 0.95 2.66 -69.76 -0.19 0.76 16 20 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.16 -0.96 4.80 -27.02 -0.13 -1.09 16 22 C -0.10 -0.58 6.53 37.44 0.24 -0.33 16 23 S -0.13 -1.13 21.99 -107.50 -2.36 -3.49 16 24 C -0.07 -0.72 6.05 -39.08 -0.24 -0.96 16 25 C -0.11 -1.04 9.65 -39.25 -0.38 -1.42 16 26 C -0.10 -0.94 10.06 -39.72 -0.40 -1.34 16 27 C -0.12 -1.24 10.03 -39.72 -0.40 -1.64 16 28 C -0.08 -0.81 8.12 -39.35 -0.32 -1.13 16 29 C -0.08 -0.81 4.49 -104.55 -0.47 -1.28 16 30 C -0.14 -2.09 9.64 -39.43 -0.38 -2.47 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 35 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 36 H 0.13 1.98 6.30 -52.49 -0.33 1.65 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.04 0.36 6.56 -51.93 -0.34 0.02 16 40 H 0.08 0.95 6.28 -51.93 -0.33 0.62 16 41 H 0.35 2.48 8.84 -39.29 -0.35 2.13 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.62 6.43 -51.93 -0.33 0.29 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 46 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 47 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 48 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 49 H 0.14 1.53 7.26 -52.49 -0.38 1.15 16 50 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 413.99 15.07 6.24 6.24 Total: -1.00 -30.64 413.99 -13.68 -44.32 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.47 Total: 2.74 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -5.03 Total: -27.50 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.17 Total: -31.84 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.20 Total: -6.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.36 Total: -3.49 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -30.64 -13.68 -44.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096403299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.706 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds