Wall clock time and date at job start Tue Mar 31 2020 05:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48503 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47276 * 299.99524 * 3 2 1 6 6 H 1.48504 * 109.47155 * 60.00221 * 3 2 1 7 7 C 1.38653 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00403 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00300 * 174.94571 * 9 7 2 11 11 C 1.38879 * 120.07021 * 185.26425 * 10 9 7 12 12 C 1.38104 * 119.92643 * 179.72243 * 11 10 9 13 13 C 1.38296 * 120.06994 * 0.54846 * 12 11 10 14 14 C 1.50704 * 119.92727 * 179.70007 * 13 12 11 15 15 N 1.46498 * 109.47195 * 270.01996 * 14 13 12 16 16 C 1.34777 * 119.99498 * 180.02562 * 15 14 13 17 17 O 1.21271 * 120.00514 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99430 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.30999 * 30.39894 * 18 16 15 20 20 S 1.81316 * 109.31007 * 270.97606 * 18 16 15 21 21 C 1.82074 * 100.86078 * 193.78762 * 20 18 16 22 22 C 1.52147 * 107.72437 * 64.01157 * 21 20 18 23 23 C 1.50232 * 113.56327 * 306.97160 * 22 21 20 24 24 C 1.39939 * 114.46671 * 200.21841 * 23 22 21 25 25 C 1.37462 * 121.51435 * 181.74155 * 24 23 22 26 26 C 1.38284 * 119.50991 * 359.97027 * 25 24 23 27 27 C 1.37564 * 119.26912 * 359.58768 * 26 25 24 28 28 C 1.36934 * 126.71498 * 21.25674 * 23 22 21 29 29 C 1.38302 * 120.14077 * 359.72578 * 13 12 11 30 30 C 1.38103 * 120.06719 * 359.97438 * 29 13 12 31 31 H 0.96996 * 120.00022 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.03292 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.96038 * 180.25660 * 12 11 10 34 34 H 1.08993 * 109.46998 * 30.02847 * 14 13 12 35 35 H 1.09001 * 109.46796 * 150.02402 * 14 13 12 36 36 H 0.96994 * 119.99841 * 0.02562 * 15 14 13 37 37 H 1.09009 * 109.80836 * 304.45714 * 21 20 18 38 38 H 1.09003 * 109.81099 * 183.57353 * 21 20 18 39 39 H 1.08995 * 108.66713 * 185.91517 * 22 21 20 40 40 H 1.09002 * 108.66253 * 68.02662 * 22 21 20 41 41 H 1.08003 * 119.24211 * 1.75816 * 24 23 22 42 42 H 1.07999 * 120.23919 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.36594 * 179.61578 * 26 25 24 44 44 H 1.08005 * 119.33498 * 180.11676 * 27 26 25 45 45 H 1.07998 * 119.96439 * 179.97438 * 29 13 12 46 46 H 1.07999 * 120.03393 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 -0.1076 11 6 1.4365 -4.7350 -0.2243 12 6 2.1873 -5.8884 -0.3388 13 6 3.5685 -5.8202 -0.3261 14 6 4.3847 -7.0816 -0.4445 15 7 4.6427 -7.6236 0.8919 16 6 5.3596 -8.7561 1.0328 17 8 5.7915 -9.3262 0.0535 18 6 5.6244 -9.3140 2.4075 19 1 4.7954 -9.0567 3.0668 20 16 7.1526 -8.5917 3.0635 21 6 7.4769 -9.6970 4.4735 22 6 7.7367 -11.0901 3.9198 23 6 6.6554 -11.5821 3.0002 24 6 6.6241 -12.9712 2.8332 25 6 5.7160 -13.5740 1.9957 26 6 4.8096 -12.7951 1.2999 27 6 4.8290 -11.4297 1.4665 28 6 5.7461 -10.8153 2.3217 29 6 4.2023 -4.5970 -0.2043 30 6 3.4572 -3.4394 -0.0956 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3579 -4.7893 -0.2295 33 1 1.6952 -6.8451 -0.4337 34 1 3.8358 -7.8154 -1.0346 35 1 5.3321 -6.8566 -0.9344 36 1 4.2975 -7.1674 1.6752 37 1 6.6097 -9.7177 5.1337 38 1 8.3517 -9.3486 5.0225 39 1 7.8283 -11.7856 4.7540 40 1 8.6801 -11.0782 3.3740 41 1 7.3296 -13.5837 3.3751 42 1 5.7104 -14.6479 1.8820 43 1 4.0941 -13.2537 0.6335 44 1 4.1203 -10.8205 0.9251 45 1 5.2811 -4.5471 -0.1943 46 1 3.9527 -2.4845 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096430873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:28 Heat of formation + Delta-G solvation = -17.656265 kcal Electronic energy + Delta-G solvation = -29067.324615 eV Core-core repulsion = 25013.198425 eV Total energy + Delta-G solvation = -4054.126190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 369.119 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58982 -39.46085 -38.98954 -37.03559 -34.86717 -34.57783 -33.11652 -32.38335 -30.40775 -30.28956 -29.95168 -28.07387 -25.66666 -24.76379 -24.09820 -22.86315 -22.07335 -21.05703 -20.78663 -20.57916 -18.50829 -17.74866 -17.04125 -16.93660 -16.89164 -16.06672 -15.76069 -15.50936 -15.37395 -15.03528 -14.65521 -14.31511 -14.10166 -14.00231 -13.87923 -13.83050 -13.54024 -13.44489 -13.29091 -13.23452 -12.96764 -12.84821 -12.48369 -12.16954 -11.86892 -11.58236 -11.44410 -11.27479 -11.17815 -10.97354 -10.85289 -10.41107 -10.37922 -10.37130 -10.05196 -9.52394 -9.12984 -9.03364 -8.95230 -8.86443 -8.38579 -8.08137 -7.44005 -6.87522 -4.16973 0.83638 1.06739 1.10921 1.91740 1.95490 2.02955 2.74427 3.08287 3.19083 3.26606 3.35964 3.46794 3.98473 4.02984 4.21821 4.33849 4.37753 4.56876 4.62868 4.67137 4.75361 4.82719 4.94205 4.97884 5.07734 5.12186 5.13576 5.24658 5.31161 5.32169 5.40153 5.55906 5.62268 5.70146 5.71764 5.80977 6.02525 6.12924 6.14770 6.23088 6.24598 6.34603 6.48388 6.65079 6.68843 6.89768 7.09201 7.18146 7.40298 7.46618 7.57948 8.04489 8.29005 8.80199 9.47611 10.56256 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.001761 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.203834 B =15895.579170 C =16828.317479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.011 3.989 3 Si 1.102 2.898 4 H -0.282 1.282 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.473 4.473 8 H 0.087 0.913 9 O -0.197 6.197 10 C 0.164 3.836 11 C -0.198 4.198 12 C -0.053 4.053 13 C -0.214 4.214 14 C 0.180 3.820 15 N -0.713 5.713 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.045 4.045 19 H 0.118 0.882 20 S -0.203 6.203 21 C -0.087 4.087 22 C -0.081 4.081 23 C -0.067 4.067 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.121 4.121 27 C -0.086 4.086 28 C -0.065 4.065 29 C -0.049 4.049 30 C -0.232 4.232 31 H 0.283 0.717 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.404 0.596 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.954 -24.016 8.739 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.195 4.195 3 Si 0.926 3.074 4 H -0.208 1.208 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.104 0.896 9 O -0.101 6.101 10 C 0.109 3.891 11 C -0.217 4.217 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.058 3.942 15 N -0.365 5.365 16 C 0.315 3.685 17 O -0.396 6.396 18 C -0.176 4.176 19 H 0.135 0.865 20 S 0.025 5.975 21 C -0.236 4.236 22 C -0.119 4.119 23 C -0.068 4.068 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.105 4.105 28 C -0.067 4.067 29 C -0.067 4.067 30 C -0.252 4.252 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.239 0.761 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.395 -21.734 7.677 26.660 hybrid contribution -0.603 -2.429 0.758 2.615 sum 12.792 -24.163 8.435 28.611 Atomic orbital electron populations 1.70520 1.06604 1.31798 1.41963 1.26593 0.96820 1.01238 0.94845 0.82996 0.73919 0.72709 0.77803 1.20793 1.20406 1.20406 1.22324 0.93252 0.82045 1.57198 0.89574 1.83663 1.35755 1.12376 1.78305 1.19290 0.90336 0.87403 0.92026 1.20188 0.99548 0.90320 1.11691 1.20513 0.92745 0.96796 0.97168 1.19190 0.93513 0.93467 1.15378 1.20023 0.98796 0.92668 0.82716 1.46320 1.54151 1.25280 1.10702 1.19433 0.78823 0.81178 0.89112 1.90740 1.50413 1.59167 1.39293 1.22188 1.00666 0.95360 0.99392 0.86459 1.87368 1.31676 1.42163 1.36247 1.23389 1.06173 0.96403 0.97610 1.20437 0.97850 0.95407 0.98245 1.19315 0.95732 0.93667 0.98076 1.21267 0.99649 0.93576 0.99957 1.21027 0.95485 0.99898 0.96534 1.21024 0.99477 0.93620 0.99838 1.21264 0.97752 0.95153 0.96328 1.18800 0.97349 0.91588 0.98967 1.20675 0.98540 0.91593 0.95933 1.21181 0.93679 0.99084 1.11208 0.90659 0.86517 0.86896 0.91307 0.91291 0.76119 0.89081 0.86549 0.89576 0.89200 0.86040 0.85820 0.85688 0.86245 0.87202 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.70 55.48 0.76 -24.83 16 2 C 0.01 0.30 5.49 -17.52 -0.10 0.20 16 3 Si 1.10 23.21 29.92 -169.99 -5.09 18.13 16 4 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -12.90 9.49 30.89 0.29 -12.60 16 8 H 0.09 2.22 5.20 -52.49 -0.27 1.94 16 9 O -0.20 -5.37 9.16 0.04 0.00 -5.37 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.20 -3.89 9.99 -39.39 -0.39 -4.28 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.35 5.25 -104.58 -0.55 -3.90 16 14 C 0.18 2.45 5.80 -5.19 -0.03 2.42 16 15 N -0.71 -8.76 5.55 -61.47 -0.34 -9.10 16 16 C 0.53 6.96 5.70 -10.98 -0.06 6.89 16 17 O -0.52 -8.51 15.19 5.56 0.08 -8.42 16 18 C -0.04 -0.48 3.00 -28.95 -0.09 -0.57 16 19 H 0.12 1.03 8.14 -51.91 -0.42 0.61 16 20 S -0.20 -2.13 21.67 -107.50 -2.33 -4.46 16 21 C -0.09 -0.59 6.57 36.72 0.24 -0.35 16 22 C -0.08 -0.55 5.29 -28.54 -0.15 -0.70 16 23 C -0.07 -0.63 5.74 -104.68 -0.60 -1.23 16 24 C -0.13 -1.03 9.39 -39.23 -0.37 -1.40 16 25 C -0.11 -0.92 10.05 -39.85 -0.40 -1.32 16 26 C -0.12 -1.15 10.06 -39.81 -0.40 -1.55 16 27 C -0.09 -0.95 8.15 -39.30 -0.32 -1.27 16 28 C -0.07 -0.71 5.22 -104.49 -0.55 -1.26 16 29 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 30 C -0.23 -4.83 9.17 -39.39 -0.36 -5.19 16 31 H 0.28 8.43 7.97 -40.82 -0.33 8.11 16 32 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.40 4.46 8.46 -40.82 -0.35 4.11 16 37 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.39 7.96 -51.93 -0.41 -0.03 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.12 0.69 7.94 -52.48 -0.42 0.28 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.37 6.75 -52.48 -0.35 1.02 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -32.26 395.85 -11.67 -43.93 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.86 Total: 9.24 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -4.86 Total: -25.07 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.42 Total: -33.93 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.09 Total: 18.13 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -2.33 Total: -4.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.26 -11.67 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096430873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.269 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds