Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48502 * 109.46756 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47151 * 299.99432 * 3 2 1 6 6 H 1.48494 * 109.47069 * 59.99831 * 3 2 1 7 7 C 1.37878 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00087 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46879 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00120 * 269.72356 * 10 9 7 12 12 C 1.53002 * 109.46950 * 90.00564 * 11 10 9 13 13 N 1.46901 * 109.47225 * 179.97438 * 12 11 10 14 14 C 1.47019 * 111.00028 * 293.63683 * 13 12 11 15 15 C 1.53098 * 109.25784 * 177.60740 * 14 13 12 16 16 O 1.43015 * 109.26092 * 56.84677 * 15 14 13 17 17 C 1.43017 * 113.73600 * 301.33008 * 16 15 14 18 18 C 1.47008 * 111.00176 * 169.99875 * 13 12 11 19 19 C 1.34772 * 119.99558 * 90.00535 * 10 9 7 20 20 O 1.21596 * 120.00023 * 180.02562 * 19 10 9 21 21 N 1.34777 * 120.00615 * 359.97438 * 19 10 9 22 22 C 1.39937 * 120.00665 * 174.63953 * 21 19 10 23 23 C 1.38841 * 120.04283 * 326.55592 * 22 21 19 24 24 C 1.38348 * 119.95372 * 179.74469 * 23 22 21 25 25 F 1.35101 * 119.97522 * 180.27817 * 24 23 22 26 26 C 1.38467 * 120.04403 * 0.50002 * 24 23 22 27 27 C 1.38471 * 120.08835 * 359.77547 * 26 24 23 28 28 F 1.35104 * 119.97589 * 179.97438 * 27 26 24 29 29 C 1.38343 * 120.04304 * 359.97215 * 27 26 24 30 30 H 0.97005 * 119.99383 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46538 * 60.00173 * 9 7 2 32 32 H 1.08993 * 109.47364 * 300.00097 * 9 7 2 33 33 H 1.08999 * 109.47425 * 210.00078 * 11 10 9 34 34 H 1.09004 * 109.47445 * 330.00531 * 11 10 9 35 35 H 1.09004 * 109.47242 * 299.99561 * 12 11 10 36 36 H 1.08997 * 109.47331 * 60.00004 * 12 11 10 37 37 H 1.08998 * 109.50465 * 297.53914 * 14 13 12 38 38 H 1.08998 * 109.50849 * 57.66652 * 14 13 12 39 39 H 1.08997 * 109.50746 * 296.90962 * 15 14 13 40 40 H 1.08999 * 109.53665 * 176.80094 * 15 14 13 41 41 H 1.09000 * 109.50570 * 298.73313 * 17 16 15 42 42 H 1.09000 * 109.53986 * 178.62626 * 17 16 15 43 43 H 1.08999 * 109.50665 * 302.32588 * 18 13 12 44 44 H 1.09004 * 109.50995 * 62.41636 * 18 13 12 45 45 H 0.97008 * 119.99554 * 354.64788 * 21 19 10 46 46 H 1.08006 * 120.01841 * 359.97438 * 23 22 21 47 47 H 1.07996 * 119.95454 * 179.74778 * 26 24 23 48 48 H 1.08002 * 120.01930 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6742 -4.1734 -1.2681 12 6 3.9348 -3.4313 -1.7166 13 7 4.4079 -3.9940 -2.9885 14 6 4.8691 -5.3789 -2.8128 15 6 5.2961 -5.9449 -4.1698 16 8 6.3067 -5.1051 -4.7343 17 6 5.8912 -3.7492 -4.9198 18 6 5.4702 -3.1610 -3.5704 19 6 2.6407 -4.1249 1.1677 20 8 3.4312 -5.0488 1.1678 21 7 2.2031 -3.6125 2.3350 22 6 2.5685 -4.2143 3.5443 23 6 2.7411 -5.5903 3.6117 24 6 3.1076 -6.1828 4.8069 25 9 3.2811 -7.5211 4.8716 26 6 3.2922 -5.4057 5.9380 27 6 3.1150 -4.0338 5.8742 28 9 3.2952 -3.2778 6.9793 29 6 2.7536 -3.4369 4.6796 30 1 -0.4849 0.8401 -0.0004 31 1 0.6246 -2.5570 -0.8897 32 1 0.6239 -2.5568 0.8902 33 1 2.9031 -5.2308 -1.1353 34 1 1.8982 -4.0619 -2.0254 35 1 3.7061 -2.3739 -1.8495 36 1 4.7109 -3.5429 -0.9595 37 1 5.7171 -5.3960 -2.1283 38 1 4.0590 -5.9833 -2.4049 39 1 4.4353 -5.9777 -4.8376 40 1 5.6920 -6.9516 -4.0366 41 1 5.0476 -3.7182 -5.6094 42 1 6.7172 -3.1674 -5.3287 43 1 5.0989 -2.1465 -3.7156 44 1 6.3277 -3.1420 -2.8976 45 1 1.6346 -2.8264 2.3367 46 1 2.5929 -6.1972 2.7306 47 1 3.5743 -5.8702 6.8712 48 1 2.6151 -2.3670 4.6304 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096446399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -120.969376 kcal Electronic energy + Delta-G solvation = -34012.676958 eV Core-core repulsion = 29125.214220 eV Total energy + Delta-G solvation = -4887.462738 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.99402 -48.94013 -40.45161 -39.48841 -38.37031 -36.22331 -34.99022 -34.37305 -32.76391 -31.21837 -30.29522 -30.18556 -29.01765 -27.49125 -25.91159 -23.99978 -23.55357 -22.94424 -22.77903 -21.75039 -20.29772 -19.63094 -18.50951 -17.53764 -17.04088 -16.74618 -16.38608 -16.31906 -16.13462 -15.96656 -15.91438 -15.57507 -15.26699 -15.13231 -15.03320 -14.85028 -14.72598 -14.52564 -14.32881 -14.09616 -13.78719 -13.10108 -12.90858 -12.82916 -12.63952 -12.22873 -12.13290 -12.05338 -11.88350 -11.82108 -11.62208 -11.48851 -11.37856 -11.10472 -10.94396 -10.71526 -10.46576 -10.24234 -10.12441 -9.86062 -9.70010 -9.67473 -8.75382 -8.70505 -8.33404 -8.23283 -7.85833 -6.36062 -4.45152 1.01629 1.06153 2.88149 3.10331 3.20422 3.22347 3.26205 3.69846 3.78381 3.88220 4.01378 4.16748 4.40352 4.48519 4.86371 4.89084 4.91791 4.97481 5.03718 5.06259 5.12718 5.15671 5.27317 5.32240 5.46302 5.54835 5.59367 5.66696 5.82660 5.84418 5.84769 5.92605 5.96650 5.99141 6.02782 6.19300 6.23299 6.38833 6.51686 6.55993 6.88770 6.98652 7.01113 7.04284 7.12672 7.18399 7.51191 7.58337 7.83255 8.26841 8.63329 8.93778 9.24902 10.70164 Molecular weight = 369.17amu Principal moments of inertia in cm(-1) A = 0.006516 B = 0.003352 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4296.082752 B = 8350.553731 C =11646.247278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.235 3.765 10 N -0.604 5.604 11 C 0.147 3.853 12 C 0.042 3.958 13 N -0.533 5.533 14 C 0.014 3.986 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.708 3.292 20 O -0.598 6.598 21 N -0.678 5.678 22 C 0.247 3.753 23 C -0.173 4.173 24 C 0.149 3.851 25 F -0.132 7.132 26 C -0.223 4.223 27 C 0.151 3.849 28 F -0.132 7.132 29 C -0.201 4.201 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.035 0.965 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.425 0.575 46 H 0.155 0.845 47 H 0.144 0.856 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -8.310 0.781 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.116 3.884 10 N -0.337 5.337 11 C 0.022 3.978 12 C -0.087 4.087 13 N -0.259 5.259 14 C -0.114 4.114 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.411 3.589 20 O -0.479 6.479 21 N -0.326 5.326 22 C 0.147 3.853 23 C -0.195 4.195 24 C 0.128 3.872 25 F -0.111 7.111 26 C -0.244 4.244 27 C 0.131 3.869 28 F -0.111 7.111 29 C -0.223 4.223 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.266 0.734 46 H 0.173 0.827 47 H 0.162 0.838 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.044 -8.882 0.286 10.218 hybrid contribution 0.586 1.675 0.916 1.997 sum 5.630 -7.206 1.203 9.224 Atomic orbital electron populations 1.69921 1.05996 1.27501 1.49041 1.24939 0.94829 0.99343 0.94451 0.86478 0.80109 0.83225 0.77929 1.19705 1.20719 1.20742 1.21519 0.93639 0.90246 1.52831 0.91863 1.19467 0.87406 0.82802 0.98766 1.47411 1.46686 1.36553 1.03040 1.21098 0.95695 0.96789 0.84193 1.22604 0.96842 1.00862 0.88388 1.62174 1.35098 1.01779 1.26872 1.22837 1.00146 0.90970 0.97440 1.22672 0.91515 0.93759 0.93289 1.87951 1.39354 1.20307 1.83237 1.22657 1.00112 0.82658 0.95753 1.22755 0.93608 0.98202 0.96431 1.15783 0.80513 0.81987 0.80648 1.90863 1.38356 1.32177 1.86460 1.42952 1.53483 1.33547 1.02649 1.16847 0.93087 0.90271 0.85047 1.21190 1.05780 0.94400 0.98114 1.16959 0.99496 0.77250 0.93464 1.91513 1.92769 1.29805 1.96985 1.20822 1.11091 0.92629 0.99822 1.16794 0.99576 0.87928 0.82644 1.91520 1.92734 1.75744 1.51063 1.20875 1.08396 1.01500 0.91494 0.92348 0.93779 0.95020 0.91012 0.89886 0.88815 0.94702 0.93990 0.89258 0.92303 0.88726 0.92236 0.88730 0.89389 0.94180 0.73359 0.82719 0.83809 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.53 13.29 55.43 0.74 -21.80 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -12.64 8.93 -34.44 -0.31 -12.94 16 8 H 0.06 1.52 7.45 -52.49 -0.39 1.13 16 9 C 0.24 4.95 4.92 -5.19 -0.03 4.92 16 10 N -0.60 -11.38 2.46 -180.80 -0.44 -11.82 16 11 C 0.15 2.47 5.39 -4.04 -0.02 2.45 16 12 C 0.04 0.69 5.28 -3.82 -0.02 0.67 16 13 N -0.53 -7.70 4.73 -234.30 -1.11 -8.81 16 14 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -5.09 10.83 -35.23 -0.38 -5.47 16 17 C 0.07 0.75 7.01 37.21 0.26 1.01 16 18 C 0.02 0.24 5.64 -3.71 -0.02 0.22 16 19 C 0.71 13.53 8.01 -86.92 -0.70 12.84 16 20 O -0.60 -12.30 13.62 5.28 0.07 -12.23 16 21 N -0.68 -11.65 5.17 -14.24 -0.07 -11.73 16 22 C 0.25 3.87 6.27 -83.71 -0.53 3.34 16 23 C -0.17 -2.69 8.63 -39.32 -0.34 -3.03 16 24 C 0.15 2.07 7.29 -39.46 -0.29 1.79 16 25 F -0.13 -1.84 17.27 2.25 0.04 -1.80 16 26 C -0.22 -2.79 10.00 -39.41 -0.39 -3.19 16 27 C 0.15 1.99 7.29 -39.46 -0.29 1.70 16 28 F -0.13 -1.72 17.27 2.25 0.04 -1.68 16 29 C -0.20 -2.80 9.94 -39.32 -0.39 -3.19 16 30 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.04 0.99 7.89 -51.93 -0.41 0.58 16 32 H 0.03 0.68 6.45 -51.93 -0.33 0.34 16 33 H 0.07 1.19 5.79 -51.93 -0.30 0.89 16 34 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 35 H 0.09 1.73 7.20 -51.93 -0.37 1.36 16 36 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.43 7.28 6.63 -40.82 -0.27 7.01 16 46 H 0.16 2.60 6.43 -52.48 -0.34 2.26 16 47 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 48 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -26.41 399.59 -9.55 -35.96 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.52 Total: 9.80 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -2.91 Total: 9.32 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.89 Total: -54.15 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.31 Total: -17.69 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -26.41 -9.55 -35.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096446399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.008 kcal (2) G-P(sol) polarization free energy of solvation -26.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds