Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99860 * 2 1 4 4 H 1.48501 * 109.47364 * 270.00053 * 3 2 1 5 5 H 1.48500 * 109.46954 * 30.00119 * 3 2 1 6 6 H 1.48500 * 109.47222 * 149.99917 * 3 2 1 7 7 C 1.38813 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00023 * 166.17818 * 7 2 1 9 9 N 1.36938 * 120.00301 * 346.18642 * 7 2 1 10 10 C 1.46925 * 120.62426 * 331.32485 * 9 7 2 11 11 C 1.53191 * 108.77424 * 233.62988 * 10 9 7 12 12 C 1.53046 * 109.31526 * 305.36809 * 11 10 9 13 13 C 1.52994 * 109.46036 * 181.38221 * 12 11 10 14 14 N 1.46506 * 109.46858 * 174.97178 * 13 12 11 15 15 C 1.34783 * 119.99759 * 179.97438 * 14 13 12 16 16 O 1.21764 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.46137 * 119.99576 * 179.97438 * 15 14 13 18 18 C 1.37831 * 126.02525 * 180.02562 * 17 15 14 19 19 C 1.39905 * 106.68278 * 180.02562 * 18 17 15 20 20 C 1.36106 * 107.17462 * 0.02562 * 19 18 17 21 21 O 1.35358 * 125.58146 * 180.02562 * 20 19 18 22 22 C 1.35888 * 117.99942 * 185.18779 * 21 20 19 23 23 C 1.38764 * 120.05629 * 256.30420 * 22 21 20 24 24 C 1.38139 * 119.93797 * 179.74378 * 23 22 21 25 25 C 1.38274 * 120.05800 * 0.51046 * 24 23 22 26 26 C 1.38275 * 120.11572 * 359.76891 * 25 24 23 27 27 C 1.38135 * 120.05822 * 359.97427 * 26 25 24 28 28 O 1.34037 * 108.83712 * 0.26055 * 20 19 18 29 29 C 1.53045 * 109.52369 * 61.36835 * 12 11 10 30 30 C 1.46920 * 120.63303 * 151.34947 * 9 7 2 31 31 H 0.96995 * 120.00390 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.58829 * 113.84997 * 10 9 7 33 33 H 1.08999 * 109.71146 * 353.48621 * 10 9 7 34 34 H 1.09000 * 109.50291 * 185.41855 * 11 10 9 35 35 H 1.08998 * 109.50113 * 65.31821 * 11 10 9 36 36 H 1.08999 * 109.45672 * 301.36105 * 12 11 10 37 37 H 1.08999 * 109.47095 * 54.98016 * 13 12 11 38 38 H 1.09000 * 109.47625 * 294.97247 * 13 12 11 39 39 H 0.96998 * 120.00057 * 0.02562 * 14 13 12 40 40 H 1.08001 * 126.66121 * 0.02562 * 18 17 15 41 41 H 1.08000 * 126.41144 * 180.02562 * 19 18 17 42 42 H 1.07995 * 120.02855 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.96708 * 180.23225 * 24 23 22 44 44 H 1.07994 * 119.94267 * 179.73868 * 25 24 23 45 45 H 1.07994 * 119.96893 * 179.97438 * 26 25 24 46 46 H 1.08008 * 120.02732 * 179.97438 * 27 26 25 47 47 H 1.09008 * 109.49437 * 58.58518 * 29 12 11 48 48 H 1.09000 * 109.49496 * 178.67726 * 29 12 11 49 49 H 1.09002 * 109.58558 * 246.15197 * 30 9 7 50 50 H 1.09000 * 109.58644 * 6.43829 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0669 -1.2158 -0.2229 9 7 1.3554 -2.3708 0.2842 10 6 0.1761 -2.3743 1.1605 11 6 0.4012 -3.3887 2.2861 12 6 0.7369 -4.7527 1.6786 13 6 0.9286 -5.7766 2.7992 14 7 1.1310 -7.1056 2.2170 15 6 1.3227 -8.1710 3.0200 16 8 1.3272 -8.0289 4.2293 17 6 1.5241 -9.4968 2.4392 18 6 1.7297 -10.6660 3.1396 19 6 1.8731 -11.6832 2.1898 20 6 1.7524 -11.1071 0.9626 21 8 1.8303 -11.7556 -0.2230 22 6 1.7945 -11.0126 -1.3601 23 6 0.6359 -10.9637 -2.1222 24 6 0.6006 -10.2033 -3.2750 25 6 1.7216 -9.4998 -3.6752 26 6 2.8792 -9.5514 -2.9207 27 6 2.9182 -10.3060 -1.7643 28 8 1.5487 -9.7917 1.1201 29 6 2.0258 -4.6450 0.8604 30 6 1.8190 -3.6451 -0.2815 31 1 -0.4850 0.8400 0.0004 32 1 -0.7058 -2.6565 0.5854 33 1 0.0320 -1.3815 1.5869 34 1 -0.5038 -3.4714 2.8879 35 1 1.2276 -3.0572 2.9148 36 1 -0.0790 -5.0722 1.0304 37 1 0.0432 -5.7895 3.4349 38 1 1.7998 -5.5044 3.3951 39 1 1.1278 -7.2187 1.2536 40 1 1.7719 -10.7756 4.2132 41 1 2.0471 -12.7296 2.3925 42 1 -0.2385 -11.5167 -1.8124 43 1 -0.3021 -10.1620 -3.8665 44 1 1.6932 -8.9093 -4.5790 45 1 3.7535 -9.0014 -3.2357 46 1 3.8228 -10.3464 -1.1755 47 1 2.8368 -4.3015 1.5027 48 1 2.2772 -5.6219 0.4473 49 1 1.0711 -4.0309 -0.9743 50 1 2.7601 -3.4898 -0.8090 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096452097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -4.769724 kcal Electronic energy + Delta-G solvation = -33004.670528 eV Core-core repulsion = 28578.757453 eV Total energy + Delta-G solvation = -4425.913075 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.11810 -40.63914 -39.56697 -38.17698 -37.79744 -35.08418 -33.56143 -32.87756 -31.50322 -31.07161 -30.77290 -29.81785 -29.19502 -26.86286 -24.61510 -23.69477 -23.25681 -22.46506 -22.29961 -21.99115 -21.03975 -20.51718 -19.55461 -19.17698 -18.18817 -17.34427 -17.11332 -16.73316 -16.28586 -15.98378 -15.80165 -15.11186 -14.90565 -14.77696 -14.46528 -13.99346 -13.95351 -13.70180 -13.58790 -13.50088 -13.36632 -13.30677 -13.29096 -13.13481 -12.95037 -12.37658 -12.34871 -12.06714 -11.90486 -11.44518 -11.35431 -10.99219 -10.73080 -10.53512 -10.45714 -10.37406 -10.23952 -10.22059 -9.91765 -9.57346 -9.49171 -9.47503 -9.34435 -9.14089 -8.48646 -8.42991 -6.66555 -5.79240 -3.23812 0.48296 0.78163 0.85433 1.93900 2.01610 2.65587 3.05049 3.15866 3.29595 3.36209 3.43292 3.45485 4.36873 4.40276 4.45886 4.48305 4.64449 4.66001 4.83791 4.89910 4.99794 5.07581 5.20143 5.29040 5.36117 5.37399 5.41035 5.47429 5.48218 5.58450 5.81057 5.83493 5.86229 5.89366 5.96196 6.00760 6.01049 6.10583 6.15086 6.30024 6.30872 6.37718 6.44658 6.58582 6.67596 6.74971 6.79928 6.95621 6.96561 7.35998 7.41194 7.68131 7.77987 7.99863 8.45399 9.21253 9.84028 10.40691 11.28885 Molecular weight = 370.17amu Principal moments of inertia in cm(-1) A = 0.009849 B = 0.002286 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.169452 B =12245.435483 C =14394.404469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.122 3.878 14 N -0.713 5.713 15 C 0.603 3.397 16 O -0.524 6.524 17 C -0.092 4.092 18 C -0.087 4.087 19 C -0.232 4.232 20 C 0.207 3.793 21 O -0.201 6.201 22 C 0.055 3.945 23 C -0.111 4.111 24 C -0.106 4.106 25 C -0.105 4.105 26 C -0.104 4.104 27 C -0.119 4.119 28 O -0.181 6.181 29 C -0.127 4.127 30 C 0.146 3.854 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.060 0.940 48 H 0.045 0.955 49 H 0.015 0.985 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -25.339 -2.628 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.109 4.109 13 C -0.001 4.001 14 N -0.363 5.363 15 C 0.389 3.611 16 O -0.403 6.403 17 C -0.143 4.143 18 C -0.108 4.108 19 C -0.252 4.252 20 C 0.112 3.888 21 O -0.113 6.113 22 C 0.014 3.986 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.137 4.137 28 O -0.081 6.081 29 C -0.167 4.167 30 C 0.020 3.980 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.239 0.761 40 H 0.187 0.813 41 H 0.183 0.817 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.034 -25.009 -2.023 25.173 hybrid contribution 0.428 0.662 -0.628 1.008 sum 2.462 -24.347 -2.651 24.615 Atomic orbital electron populations 1.69989 1.05235 1.25456 1.54333 1.25075 0.95361 0.98365 1.00894 0.86286 0.79118 0.83620 0.77681 1.21423 1.21547 1.20496 1.19184 0.91598 0.84409 1.42850 0.91810 1.44041 1.32672 1.02085 1.52747 1.20797 0.88084 0.97917 0.88667 1.22192 1.00249 0.94683 1.00135 1.21325 0.98745 0.95169 0.95705 1.21693 1.01825 0.79921 0.96619 1.46029 1.71903 1.07972 1.10419 1.16349 0.77375 0.81262 0.86083 1.90905 1.52393 1.84111 1.12922 1.22123 1.17041 0.96654 0.78502 1.21991 0.98268 0.89412 1.01100 1.20791 1.15225 1.01797 0.87347 1.20968 1.00179 0.80491 0.87126 1.84783 1.87939 1.29200 1.09387 1.18719 0.94856 0.98004 0.86999 1.21281 0.96500 0.99029 0.96081 1.21128 0.99079 0.96207 0.96036 1.21409 0.92846 0.98244 0.99838 1.21140 0.98893 0.98043 0.94124 1.21459 0.97902 0.96323 0.98035 1.84040 1.71294 1.24552 1.28178 1.22081 0.96747 0.98675 0.99178 1.20873 0.97489 0.87090 0.92578 0.93624 0.96539 0.89024 0.93002 0.92335 0.91287 0.91321 0.91148 0.76052 0.81332 0.81700 0.84845 0.84750 0.84934 0.84745 0.85062 0.92095 0.93605 0.96675 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.98 11.03 55.49 0.61 -25.37 16 2 C 0.00 0.03 5.00 -17.43 -0.09 -0.05 16 3 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.80 9.60 -15.06 -0.14 -6.95 16 8 H 0.06 1.70 7.87 -52.48 -0.41 1.29 16 9 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 10 C 0.17 3.99 5.28 -3.71 -0.02 3.97 16 11 C -0.13 -2.44 5.36 -26.61 -0.14 -2.58 16 12 C -0.09 -1.43 2.19 -90.58 -0.20 -1.62 16 13 C 0.12 1.74 5.06 -4.04 -0.02 1.72 16 14 N -0.71 -9.41 5.27 -61.78 -0.33 -9.73 16 15 C 0.60 8.55 7.77 -13.09 -0.10 8.45 16 16 O -0.52 -8.84 16.87 5.13 0.09 -8.76 16 17 C -0.09 -1.15 7.15 -36.56 -0.26 -1.41 16 18 C -0.09 -0.92 10.66 -39.11 -0.42 -1.34 16 19 C -0.23 -2.19 10.89 -39.72 -0.43 -2.62 16 20 C 0.21 2.22 7.76 29.97 0.23 2.45 16 21 O -0.20 -2.05 10.04 -25.16 -0.25 -2.30 16 22 C 0.06 0.53 5.41 -39.20 -0.21 0.32 16 23 C -0.11 -0.92 9.99 -39.42 -0.39 -1.32 16 24 C -0.11 -0.77 10.04 -39.60 -0.40 -1.16 16 25 C -0.11 -0.75 10.04 -39.55 -0.40 -1.15 16 26 C -0.10 -0.80 10.04 -39.61 -0.40 -1.19 16 27 C -0.12 -1.05 9.89 -39.43 -0.39 -1.44 16 28 O -0.18 -2.14 9.91 -19.31 -0.19 -2.33 16 29 C -0.13 -2.10 5.25 -26.61 -0.14 -2.24 16 30 C 0.15 2.96 6.52 -3.72 -0.02 2.94 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 2.41 5.99 -51.93 -0.31 2.10 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.40 4.85 7.40 -40.82 -0.30 4.55 16 40 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 47 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 48 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 417.10 15.07 6.29 6.29 Total: -1.00 -31.71 417.10 -10.56 -42.27 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.29 Total: 3.75 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.95 Total: -5.23 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.23 Total: -50.18 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.36 Total: -13.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.71 -10.56 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096452097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.502 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds