Wall clock time and date at job start Tue Mar 31 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48494 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46892 * 299.99686 * 3 2 1 6 6 H 1.48502 * 109.47122 * 59.99470 * 3 2 1 7 7 C 1.40048 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99487 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00293 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99782 * 4.95625 * 9 7 2 11 11 N 1.34774 * 119.99847 * 184.68033 * 9 7 2 12 12 C 1.46928 * 120.63243 * 355.11124 * 11 9 7 13 13 C 1.53185 * 108.77668 * 126.36917 * 12 11 9 14 14 C 1.53046 * 109.31484 * 54.63593 * 13 12 11 15 15 C 1.53043 * 109.53359 * 298.63362 * 14 13 12 16 16 C 1.46931 * 120.62942 * 174.83281 * 11 9 7 17 17 H 1.08998 * 109.58900 * 113.84052 * 16 11 9 18 18 C 1.50701 * 109.58406 * 353.41342 * 16 11 9 19 19 O 1.21286 * 120.00313 * 310.27069 * 18 16 11 20 20 N 1.34777 * 119.99465 * 130.26957 * 18 16 11 21 21 C 1.40027 * 119.99945 * 174.51182 * 20 18 16 22 22 C 1.38842 * 120.06307 * 335.61337 * 21 20 18 23 23 C 1.38107 * 119.95881 * 179.97438 * 22 21 20 24 24 C 1.38400 * 120.07660 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 119.93576 * 179.97438 * 24 23 22 26 26 C 1.38355 * 120.12724 * 359.97438 * 24 23 22 27 27 C 1.38232 * 120.03775 * 359.74326 * 26 24 23 28 28 Cl 1.73601 * 120.03390 * 180.25638 * 27 26 24 29 29 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58205 * 246.15730 * 12 11 9 31 31 H 1.08996 * 109.58748 * 6.43345 * 12 11 9 32 32 H 1.09005 * 109.50068 * 174.58575 * 13 12 11 33 33 H 1.09001 * 109.49901 * 294.68624 * 13 12 11 34 34 H 1.08992 * 109.46102 * 58.65430 * 14 13 12 35 35 H 1.09000 * 109.45805 * 178.63060 * 14 13 12 36 36 H 1.08999 * 109.49524 * 181.31579 * 15 14 13 37 37 H 1.08999 * 109.49974 * 301.38091 * 15 14 13 38 38 H 0.97000 * 120.00155 * 354.51392 * 20 18 16 39 39 H 1.08008 * 120.02129 * 359.95327 * 22 21 20 40 40 H 1.08007 * 119.96131 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.98204 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8818 2.3966 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0618 -2.4825 -0.0910 11 7 1.9457 -3.6457 0.0963 12 6 3.4148 -3.6664 0.0938 13 6 3.8992 -4.4327 1.3286 14 6 3.2512 -5.8190 1.3505 15 6 1.7305 -5.6716 1.4393 16 6 1.2214 -4.9189 0.2113 17 1 1.3957 -5.5204 -0.6808 18 6 -0.2536 -4.6492 0.3620 19 8 -0.6428 -3.8497 1.1869 20 7 -1.1402 -5.2964 -0.4199 21 6 -2.5141 -5.1334 -0.2037 22 6 -2.9813 -4.7563 1.0481 23 6 -4.3367 -4.5956 1.2588 24 6 -5.2298 -4.8106 0.2236 25 17 -6.9329 -4.6083 0.4926 26 6 -4.7679 -5.1865 -1.0252 27 6 -3.4119 -5.3430 -1.2432 28 17 -2.8320 -5.8082 -2.8120 29 1 -0.4850 0.8400 -0.0004 30 1 3.7716 -4.1636 -0.8082 31 1 3.7947 -2.6452 0.1225 32 1 4.9834 -4.5385 1.2889 33 1 3.6193 -3.8860 2.2290 34 1 3.5113 -6.3559 0.4383 35 1 3.6130 -6.3753 2.2151 36 1 1.2709 -6.6592 1.4785 37 1 1.4709 -5.1137 2.3390 38 1 -0.8267 -5.8751 -1.1324 39 1 -2.2852 -4.5890 1.8569 40 1 -4.7002 -4.3027 2.2328 41 1 -5.4669 -5.3532 -1.8314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:35 Heat of formation + Delta-G solvation = -33.495661 kcal Electronic energy + Delta-G solvation = -29646.702697 eV Core-core repulsion = 25386.154097 eV Total energy + Delta-G solvation = -4260.548599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 370.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49582 -39.13561 -37.44616 -36.66669 -36.10403 -35.84364 -34.16286 -32.56437 -31.71849 -31.20364 -30.75637 -29.03534 -26.52152 -24.81083 -23.50456 -23.08946 -22.19470 -20.78427 -20.15606 -18.91480 -17.83366 -17.06764 -16.65890 -16.22496 -15.63758 -15.28137 -14.80781 -14.64352 -14.43007 -14.16249 -13.99400 -13.79420 -13.73439 -13.52961 -13.03874 -12.98154 -12.55821 -12.51487 -12.32247 -12.08204 -11.83662 -11.56225 -11.21406 -11.13408 -11.09550 -10.98294 -10.96465 -10.87044 -10.68110 -10.61213 -10.48114 -10.22970 -9.92824 -9.79668 -9.00620 -8.84470 -8.72449 -7.80104 -7.45534 -7.14991 -6.15715 -4.63160 1.11709 1.26407 1.91777 2.36259 3.10764 3.13953 3.21005 3.24074 3.32735 3.81567 4.07023 4.43288 4.60854 4.76962 4.89487 5.05699 5.10595 5.13653 5.30002 5.33303 5.45331 5.49723 5.57833 5.75520 5.79896 5.86341 5.94726 5.99167 6.08574 6.14714 6.20680 6.25305 6.28692 6.36668 6.48033 6.54784 6.70320 7.02667 7.39462 7.45904 7.74981 8.06694 8.27001 8.83895 9.03544 9.35096 10.56955 10.75613 Molecular weight = 370.06amu Principal moments of inertia in cm(-1) A = 0.009252 B = 0.003474 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.554063 B = 8058.496778 C = 9589.550562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.089 3.911 3 Si 0.903 3.097 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.551 3.449 10 O -0.537 6.537 11 N -0.632 5.632 12 C 0.124 3.876 13 C -0.138 4.138 14 C -0.111 4.111 15 C -0.122 4.122 16 C 0.144 3.856 17 H 0.062 0.938 18 C 0.526 3.474 19 O -0.451 6.451 20 N -0.675 5.675 21 C 0.204 3.796 22 C -0.109 4.109 23 C -0.079 4.079 24 C -0.058 4.058 25 Cl -0.074 7.074 26 C -0.080 4.080 27 C -0.072 4.072 28 Cl -0.062 7.062 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.405 0.595 39 H 0.163 0.837 40 H 0.138 0.862 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 -14.108 -0.041 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.357 3.643 10 O -0.417 6.417 11 N -0.373 5.373 12 C 0.000 4.000 13 C -0.177 4.177 14 C -0.149 4.149 15 C -0.161 4.161 16 C 0.036 3.964 17 H 0.080 0.920 18 C 0.314 3.686 19 O -0.320 6.320 20 N -0.320 5.320 21 C 0.106 3.894 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.086 4.086 25 Cl -0.045 7.045 26 C -0.099 4.099 27 C -0.102 4.102 28 Cl -0.034 7.034 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.240 0.760 39 H 0.181 0.819 40 H 0.156 0.844 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.218 -13.385 0.428 13.774 hybrid contribution 0.609 0.612 -0.698 1.110 sum -2.609 -12.774 -0.270 13.040 Atomic orbital electron populations 1.70035 1.06900 1.27055 1.34811 1.25692 0.94582 1.00127 0.92773 0.86383 0.80478 0.82112 0.78207 1.18791 1.20237 1.20216 1.20919 0.93361 0.88996 1.54490 0.91030 1.18313 0.87302 0.81981 0.76725 1.90743 1.13539 1.84367 1.53068 1.48287 1.04884 1.03884 1.80277 1.21471 0.81440 1.01852 0.95243 1.21977 0.99270 0.96030 1.00374 1.21438 0.94567 0.97461 1.01416 1.21766 0.96492 0.99431 0.98409 1.20465 0.89040 0.89094 0.97830 0.91991 1.20156 0.87581 0.78946 0.81962 1.90715 1.79012 1.26855 1.35415 1.43702 1.03103 1.48564 1.36635 1.17575 0.83610 0.96142 0.92115 1.21415 0.95259 0.99827 0.96510 1.21037 0.92020 0.98117 0.98689 1.20555 0.84910 1.07926 0.95210 1.98347 1.13391 1.96171 1.96619 1.20548 0.93246 0.99781 0.96375 1.20384 0.93082 1.10500 0.86199 1.98350 1.88853 1.90757 1.25416 0.92242 0.93942 0.88431 0.91795 0.91437 0.92158 0.92106 0.91677 0.90650 0.75955 0.81930 0.84376 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.77 11.84 55.55 0.66 -22.11 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.90 20.07 29.56 -169.99 -5.02 15.05 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.84 8.88 -35.63 -0.32 -15.16 16 8 H 0.07 1.79 5.64 -52.48 -0.30 1.49 16 9 C 0.55 15.05 7.23 -12.99 -0.09 14.96 16 10 O -0.54 -16.36 10.26 -20.48 -0.21 -16.57 16 11 N -0.63 -13.52 2.98 -168.44 -0.50 -14.02 16 12 C 0.12 2.14 6.35 -3.71 -0.02 2.11 16 13 C -0.14 -1.93 6.08 -26.61 -0.16 -2.09 16 14 C -0.11 -1.37 5.89 -26.69 -0.16 -1.53 16 15 C -0.12 -1.78 5.33 -26.83 -0.14 -1.92 16 16 C 0.14 2.58 3.29 -68.97 -0.23 2.36 16 17 H 0.06 0.96 7.95 -51.93 -0.41 0.54 16 18 C 0.53 10.69 4.74 -10.98 -0.05 10.64 16 19 O -0.45 -11.17 10.88 -20.13 -0.22 -11.39 16 20 N -0.68 -11.63 5.20 -9.83 -0.05 -11.68 16 21 C 0.20 3.52 6.44 -83.63 -0.54 2.98 16 22 C -0.11 -1.89 8.72 -39.41 -0.34 -2.23 16 23 C -0.08 -1.18 9.82 -39.57 -0.39 -1.57 16 24 C -0.06 -0.82 6.32 -39.48 -0.25 -1.07 16 25 Cl -0.07 -0.92 28.95 -51.86 -1.50 -2.42 16 26 C -0.08 -1.11 9.61 -39.54 -0.38 -1.49 16 27 C -0.07 -1.10 6.34 -39.32 -0.25 -1.35 16 28 Cl -0.06 -0.86 27.78 -51.86 -1.44 -2.30 16 29 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.81 5.30 -51.93 -0.28 1.54 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.40 5.84 7.62 -40.82 -0.31 5.53 16 39 H 0.16 3.06 5.76 -52.48 -0.30 2.75 16 40 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -34.46 362.96 -10.78 -45.24 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.54 Total: 7.74 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -3.42 Total: 7.00 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.10 Total: -47.82 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.43 Total: -27.95 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.94 Total: -4.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.46 -10.78 -45.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.742 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds