Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48504 * 109.46727 * 273.28694 * 3 2 1 5 5 H 1.48501 * 109.47060 * 33.28626 * 3 2 1 6 6 H 1.48494 * 109.47026 * 153.28939 * 3 2 1 7 7 C 1.40052 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00059 * 3.09397 * 7 2 1 9 9 C 1.46375 * 119.99813 * 183.09692 * 7 2 1 10 10 O 1.21683 * 120.00260 * 334.43300 * 9 7 2 11 11 N 1.34780 * 120.00120 * 154.43251 * 9 7 2 12 12 C 1.46926 * 120.62815 * 355.02973 * 11 9 7 13 13 C 1.53192 * 108.77235 * 233.58358 * 12 11 9 14 14 C 1.53039 * 109.31616 * 305.36545 * 13 12 11 15 15 C 1.53034 * 109.53937 * 61.36233 * 14 13 12 16 16 C 1.46920 * 120.63351 * 174.99889 * 11 9 7 17 17 H 1.08991 * 109.59074 * 246.34355 * 16 11 9 18 18 C 1.50704 * 109.58552 * 6.63223 * 16 11 9 19 19 O 1.21293 * 119.99822 * 56.97669 * 18 16 11 20 20 N 1.34777 * 119.99842 * 236.97973 * 18 16 11 21 21 C 1.40025 * 119.99951 * 185.12107 * 20 18 16 22 22 C 1.38848 * 120.06014 * 24.41807 * 21 20 18 23 23 C 1.38112 * 119.94930 * 180.29672 * 22 21 20 24 24 C 1.38397 * 120.08356 * 359.42972 * 23 22 21 25 25 Cl 1.73599 * 119.94186 * 180.27408 * 24 23 22 26 26 C 1.38363 * 120.12138 * 0.29650 * 24 23 22 27 27 C 1.38225 * 120.04423 * 0.02562 * 26 24 23 28 28 Cl 1.73594 * 120.03854 * 179.97438 * 27 26 24 29 29 H 0.96999 * 119.99873 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.59065 * 353.36613 * 12 11 9 31 31 H 1.08993 * 109.59023 * 113.79790 * 12 11 9 32 32 H 1.09003 * 109.50246 * 65.31813 * 13 12 11 33 33 H 1.09007 * 109.50148 * 185.37872 * 13 12 11 34 34 H 1.08995 * 109.46205 * 181.38849 * 14 13 12 35 35 H 1.09004 * 109.45781 * 301.35776 * 14 13 12 36 36 H 1.08997 * 109.49972 * 178.68657 * 15 14 13 37 37 H 1.09004 * 109.49831 * 58.58572 * 15 14 13 38 38 H 0.97000 * 120.00120 * 5.11827 * 20 18 16 39 39 H 1.07997 * 120.02616 * 0.02924 * 22 21 20 40 40 H 1.08007 * 119.95787 * 179.70879 * 23 22 21 41 41 H 1.08000 * 119.97721 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4187 2.0865 -1.3978 5 1 1.4747 2.6316 0.7684 6 1 3.5713 1.4210 0.6293 7 6 2.0069 -1.2129 -0.0005 8 1 1.4681 -2.1475 -0.0514 9 6 3.4691 -1.2139 0.0679 10 8 4.0976 -0.2516 -0.3316 11 7 4.1193 -2.2807 0.5736 12 6 3.3739 -3.4032 1.1591 13 6 3.9043 -3.6634 2.5725 14 6 5.4186 -3.8771 2.5136 15 6 6.0926 -2.6155 1.9694 16 6 5.5870 -2.3435 0.5491 17 1 5.9074 -3.1461 -0.1150 18 6 6.1407 -1.0304 0.0586 19 8 5.8579 -0.0004 0.6334 20 7 6.9500 -1.0007 -1.0187 21 6 7.5503 0.2022 -1.4104 22 6 7.7509 1.2143 -0.4813 23 6 8.3376 2.4021 -0.8716 24 6 8.7364 2.5803 -2.1848 25 17 9.4800 4.0722 -2.6697 26 6 8.5433 1.5717 -3.1120 27 6 7.9506 0.3833 -2.7286 28 17 7.7077 -0.8817 -3.8923 29 1 -0.4850 0.8401 0.0004 30 1 2.3141 -3.1529 1.2069 31 1 3.5138 -4.2939 0.5466 32 1 3.6823 -2.8061 3.2081 33 1 3.4265 -4.5534 2.9824 34 1 5.7949 -4.0868 3.5148 35 1 5.6413 -4.7191 1.8582 36 1 7.1728 -2.7599 1.9496 37 1 5.8500 -1.7680 2.6105 38 1 7.1167 -1.8126 -1.5226 39 1 7.4444 1.0744 0.5448 40 1 8.4894 3.1913 -0.1500 41 1 8.8551 1.7134 -4.1363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -42.833165 kcal Electronic energy + Delta-G solvation = -29838.837309 eV Core-core repulsion = 25577.883805 eV Total energy + Delta-G solvation = -4260.953504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 370.064 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70572 -39.34948 -37.66624 -36.78811 -36.32797 -36.22471 -34.35704 -32.80890 -32.05323 -31.36333 -30.89264 -29.19044 -26.85166 -24.96219 -23.70501 -23.22443 -22.31305 -20.89524 -20.30112 -19.02681 -17.96182 -17.19754 -16.81204 -16.48793 -15.82985 -15.44877 -15.15019 -14.74716 -14.58078 -14.37487 -14.07462 -13.95760 -13.87977 -13.68923 -13.30422 -12.96189 -12.70731 -12.50730 -12.44518 -12.19134 -12.11391 -11.90994 -11.79270 -11.26066 -11.24779 -11.08897 -10.99136 -10.92037 -10.81025 -10.64914 -10.44728 -10.25797 -10.02320 -9.33528 -9.20117 -8.98004 -8.89901 -7.98929 -7.62113 -7.44965 -6.58533 -4.79615 0.97059 1.12174 1.80041 2.24000 2.90900 3.14646 3.47370 3.52892 3.65163 3.90058 4.09997 4.26349 4.60645 4.62925 4.74422 4.92445 4.98190 5.03389 5.16830 5.20002 5.29993 5.35560 5.41307 5.49673 5.65508 5.75856 5.81425 5.88537 5.97549 6.04230 6.07445 6.10931 6.16910 6.27271 6.39144 6.47638 6.60358 6.85633 6.96471 7.43956 7.61005 7.84341 8.27658 8.58531 8.73623 9.08273 9.99391 10.42356 Molecular weight = 370.06amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.003780 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.645778 B = 7405.100614 C = 8675.117089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.105 3.895 3 Si 0.921 3.079 4 H -0.283 1.283 5 H -0.320 1.320 6 H -0.213 1.213 7 C -0.531 4.531 8 H 0.088 0.912 9 C 0.547 3.453 10 O -0.573 6.573 11 N -0.621 5.621 12 C 0.124 3.876 13 C -0.138 4.138 14 C -0.113 4.113 15 C -0.121 4.121 16 C 0.141 3.859 17 H 0.068 0.932 18 C 0.531 3.469 19 O -0.460 6.460 20 N -0.674 5.674 21 C 0.201 3.799 22 C -0.112 4.112 23 C -0.080 4.080 24 C -0.057 4.057 25 Cl -0.071 7.071 26 C -0.079 4.079 27 C -0.071 4.071 28 Cl -0.059 7.059 29 H 0.280 0.720 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.407 0.593 39 H 0.165 0.835 40 H 0.139 0.861 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.565 -4.585 -0.412 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.112 4.112 3 Si 0.751 3.249 4 H -0.209 1.209 5 H -0.251 1.251 6 H -0.136 1.136 7 C -0.567 4.567 8 H 0.106 0.894 9 C 0.355 3.645 10 O -0.461 6.461 11 N -0.359 5.359 12 C 0.000 4.000 13 C -0.176 4.176 14 C -0.150 4.150 15 C -0.160 4.160 16 C 0.033 3.967 17 H 0.086 0.914 18 C 0.319 3.681 19 O -0.330 6.330 20 N -0.319 5.319 21 C 0.102 3.898 22 C -0.133 4.133 23 C -0.100 4.100 24 C -0.085 4.085 25 Cl -0.043 7.043 26 C -0.099 4.099 27 C -0.101 4.101 28 Cl -0.031 7.031 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.243 0.757 39 H 0.182 0.818 40 H 0.157 0.843 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.447 -3.353 -0.268 17.769 hybrid contribution 0.068 0.151 -0.697 0.716 sum 17.516 -3.202 -0.964 17.832 Atomic orbital electron populations 1.69531 1.07848 1.29744 1.39475 1.25643 0.94695 1.01625 0.89222 0.86035 0.81606 0.77900 0.79323 1.20903 1.25114 1.13642 1.20640 0.88008 0.95373 1.52642 0.89360 1.18539 0.89332 0.79593 0.77022 1.90604 1.67362 1.33546 1.54596 1.47876 1.01437 1.21936 1.64613 1.21523 0.98480 0.88301 0.91681 1.21970 0.95210 1.01856 0.98562 1.21459 0.96058 0.96854 1.00654 1.21838 0.99300 0.99641 0.95211 1.20703 0.85218 0.93784 0.96999 0.91416 1.20150 0.76627 0.91458 0.79856 1.90681 1.52530 1.33666 1.56075 1.43703 1.47667 1.09237 1.31292 1.17579 0.93132 0.88513 0.90546 1.21440 0.98602 0.91855 1.01412 1.21058 0.96798 0.97883 0.94215 1.20586 1.04544 0.88778 0.94635 1.98354 1.81071 1.32835 1.92004 1.20583 0.98959 0.90361 0.99965 1.20406 1.08671 0.92256 0.88808 1.98359 1.95843 1.50788 1.58081 0.90983 0.87815 0.93436 0.91353 0.91413 0.91904 0.92055 0.91509 0.90368 0.75730 0.81830 0.84282 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.92 13.92 55.55 0.77 -23.14 16 2 C 0.11 3.00 5.52 -17.37 -0.10 2.90 16 3 Si 0.92 24.91 26.54 -169.99 -4.51 20.40 16 4 H -0.28 -7.88 7.11 56.52 0.40 -7.48 16 5 H -0.32 -8.44 7.11 56.52 0.40 -8.04 16 6 H -0.21 -6.13 5.70 56.52 0.32 -5.81 16 7 C -0.53 -14.56 8.90 -35.63 -0.32 -14.88 16 8 H 0.09 2.42 6.74 -52.48 -0.35 2.07 16 9 C 0.55 13.83 7.02 -12.99 -0.09 13.74 16 10 O -0.57 -15.57 7.24 -20.39 -0.15 -15.72 16 11 N -0.62 -12.39 2.97 -168.19 -0.50 -12.89 16 12 C 0.12 2.05 6.27 -3.71 -0.02 2.03 16 13 C -0.14 -1.85 6.08 -26.61 -0.16 -2.01 16 14 C -0.11 -1.29 5.88 -26.69 -0.16 -1.45 16 15 C -0.12 -1.63 5.33 -26.61 -0.14 -1.78 16 16 C 0.14 2.31 3.31 -68.75 -0.23 2.08 16 17 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 18 C 0.53 9.85 4.62 -10.98 -0.05 9.80 16 19 O -0.46 -10.32 10.97 -20.05 -0.22 -10.54 16 20 N -0.67 -10.66 5.20 -9.82 -0.05 -10.71 16 21 C 0.20 3.19 6.44 -83.63 -0.54 2.66 16 22 C -0.11 -1.78 8.72 -39.40 -0.34 -2.12 16 23 C -0.08 -1.10 9.82 -39.57 -0.39 -1.48 16 24 C -0.06 -0.75 6.32 -39.48 -0.25 -1.00 16 25 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.33 16 26 C -0.08 -1.02 9.61 -39.54 -0.38 -1.40 16 27 C -0.07 -1.02 6.34 -39.32 -0.25 -1.27 16 28 Cl -0.06 -0.76 27.77 -51.86 -1.44 -2.21 16 29 H 0.28 7.48 8.29 -40.82 -0.34 7.15 16 30 H 0.10 1.95 5.74 -51.93 -0.30 1.66 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 38 H 0.41 5.35 7.59 -40.82 -0.31 5.04 16 39 H 0.16 2.79 5.75 -52.49 -0.30 2.49 16 40 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -32.96 358.68 -10.30 -43.25 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.69 Total: 2.66 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -3.42 Total: 5.81 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.22 Total: -46.74 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.37 Total: -26.26 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.51 Total: 20.40 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -2.94 Total: -4.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.96 -10.30 -43.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.419 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds