Wall clock time and date at job start Tue Mar 31 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 H 1.09002 * 109.47025 * 55.00095 * 3 2 1 5 5 C 1.50700 * 109.47289 * 175.00360 * 3 2 1 6 6 H 1.07997 * 120.00322 * 119.99849 * 5 3 2 7 7 C 1.37878 * 119.99816 * 300.00045 * 5 3 2 8 8 N 1.31514 * 120.00176 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47010 * 90.00031 * 9 7 5 11 11 H 1.48499 * 109.47067 * 210.00178 * 9 7 5 12 12 H 1.48505 * 109.46845 * 330.00243 * 9 7 5 13 13 N 1.46499 * 109.47161 * 295.00364 * 3 2 1 14 14 C 1.34773 * 120.00195 * 84.99941 * 13 3 2 15 15 O 1.21596 * 119.99975 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00598 * 180.02562 * 14 13 3 17 17 C 1.39939 * 120.00381 * 185.62137 * 16 14 13 18 18 C 1.38896 * 120.06774 * 24.81684 * 17 16 14 19 19 C 1.38096 * 119.95269 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.07807 * 359.97438 * 19 18 17 21 21 C 1.38349 * 120.13144 * 0.02562 * 20 19 18 22 22 Br 1.89100 * 119.97481 * 179.97438 * 21 20 19 23 23 C 1.38223 * 120.05173 * 359.97438 * 21 20 19 24 24 C 1.50693 * 120.03997 * 179.72759 * 23 21 20 25 25 O 1.42901 * 109.47492 * 90.00193 * 24 23 21 26 26 C 1.42898 * 114.00433 * 180.02562 * 25 24 23 27 27 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46636 * 299.99383 * 1 2 3 29 29 H 1.08995 * 109.47707 * 59.99781 * 1 2 3 30 30 H 1.08999 * 109.46980 * 240.00907 * 2 1 3 31 31 H 1.08995 * 109.47707 * 120.00219 * 2 1 3 32 32 H 0.96997 * 120.00380 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99852 * 264.99656 * 13 3 2 34 34 H 0.97005 * 119.99503 * 5.61894 * 16 14 13 35 35 H 1.08007 * 120.01975 * 0.04267 * 18 17 16 36 36 H 1.08003 * 119.96020 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.93280 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47387 * 209.99821 * 24 23 21 39 39 H 1.08999 * 109.47446 * 329.99506 * 24 23 21 40 40 H 1.09006 * 109.47115 * 299.99918 * 26 25 24 41 41 H 1.09002 * 109.47219 * 59.99000 * 26 25 24 42 42 H 1.08999 * 109.47454 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2278 8 7 3.4064 0.3366 2.1728 9 14 6.0051 0.8801 1.3810 10 1 6.4428 2.1130 2.0835 11 1 6.4392 -0.3109 2.1543 12 1 6.6131 0.8397 0.0267 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 7 0.0781 3.2666 -2.5186 17 6 -1.1366 3.9565 -2.6003 18 6 -1.7236 4.4705 -1.4512 19 6 -2.9227 5.1506 -1.5345 20 6 -3.5391 5.3208 -2.7606 21 6 -2.9574 4.8102 -3.9073 22 35 -3.8046 5.0449 -5.5815 23 6 -1.7573 4.1286 -3.8301 24 6 -1.1270 3.5673 -5.0785 25 8 -0.2596 4.5455 -5.6554 26 6 0.3918 4.1118 -6.8511 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8294 -0.0618 2.9493 33 1 2.2718 2.1233 -1.9978 34 1 0.6634 3.2217 -3.2909 35 1 -1.2425 4.3387 -0.4933 36 1 -3.3795 5.5499 -0.6411 37 1 -4.4771 5.8527 -2.8230 38 1 -0.5524 2.6760 -4.8262 39 1 -1.9070 3.3063 -5.7937 40 1 0.9978 3.2316 -6.6360 41 1 -0.3570 3.8624 -7.6029 42 1 1.0313 4.9106 -7.2267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097141421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:18 Heat of formation + Delta-G solvation = -41.912650 kcal Electronic energy + Delta-G solvation = -25674.882364 eV Core-core repulsion = 21894.665020 eV Total energy + Delta-G solvation = -3780.217343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 370.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63006 -38.90812 -37.64310 -35.59732 -34.38349 -32.71345 -32.45362 -31.25120 -30.41919 -28.81781 -27.38721 -26.84598 -25.44984 -23.45302 -22.60483 -21.49366 -20.53273 -19.61416 -18.34704 -17.53576 -16.61896 -16.45762 -16.09885 -15.97265 -15.30929 -15.05974 -14.72901 -14.62072 -14.19533 -13.80151 -13.36176 -13.32076 -12.91018 -12.70918 -12.57891 -12.37271 -11.74075 -11.66424 -11.60873 -11.36202 -11.30456 -11.06759 -10.98820 -10.87824 -10.38174 -10.35832 -10.25112 -10.13461 -9.78027 -9.64662 -9.41000 -9.10199 -8.76740 -8.56016 -8.11110 -7.78349 -6.17680 -4.27269 1.05397 1.24666 1.50260 3.05476 3.21461 3.28756 3.30535 3.35716 3.69666 4.01377 4.27729 4.63849 4.69257 4.80897 4.96905 5.07349 5.14255 5.16019 5.21776 5.32384 5.48264 5.50273 5.55721 5.65378 6.08891 6.24246 6.35824 6.38060 6.42785 6.52789 6.62100 6.89801 6.94104 7.00633 7.07832 7.27160 7.30228 7.37512 7.59096 7.79362 7.89515 8.12497 8.64194 8.75457 9.12256 9.40536 10.87637 Molecular weight = 370.07amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.002470 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.513469 B =11331.438006 C =12147.631714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.715 5.715 14 C 0.692 3.308 15 O -0.571 6.571 16 N -0.690 5.690 17 C 0.216 3.784 18 C -0.120 4.120 19 C -0.085 4.085 20 C -0.126 4.126 21 C -0.049 4.049 22 Br -0.053 7.053 23 C -0.114 4.114 24 C 0.097 3.903 25 O -0.378 6.378 26 C 0.029 3.971 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 8.506 -17.041 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.449 6.449 16 N -0.336 5.336 17 C 0.117 3.883 18 C -0.141 4.141 19 C -0.104 4.104 20 C -0.148 4.148 21 C -0.129 4.129 22 Br 0.032 6.968 23 C -0.120 4.120 24 C 0.020 3.980 25 O -0.297 6.297 26 C -0.068 4.068 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.240 0.760 35 H 0.178 0.822 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.280 8.547 -16.459 22.810 hybrid contribution 1.749 -0.435 -0.475 1.864 sum -11.531 8.113 -16.934 22.035 Atomic orbital electron populations 1.21821 0.98238 0.98001 1.01256 1.21965 0.92698 0.99812 1.02313 1.18762 0.94116 0.88915 0.79750 0.93078 1.21205 0.90565 1.39245 1.06406 0.92068 1.24870 0.98656 0.94718 0.95341 1.69887 1.35188 1.37413 1.09328 0.86442 0.84731 0.77686 0.78207 1.20535 1.21047 1.19864 1.45892 1.12814 1.58430 1.19414 1.16113 0.83733 0.78737 0.82132 1.90861 1.51551 1.64227 1.38267 1.42995 1.20197 1.55187 1.15229 1.17273 0.86092 0.92128 0.92851 1.21754 0.96475 0.96191 0.99671 1.21112 0.94847 0.97355 0.97124 1.20969 1.00859 1.01765 0.91158 1.21303 0.96617 1.03420 0.91566 1.96633 1.78828 1.96394 1.24926 1.18976 0.94924 1.04625 0.93450 1.21326 0.93523 0.90912 0.92211 1.88001 1.60975 1.39905 1.40859 1.22776 0.96577 1.00627 0.86772 0.95927 0.93065 0.94376 0.95079 0.88165 0.92480 0.78141 0.75980 0.82193 0.84807 0.85160 0.92315 0.91296 0.93910 0.94000 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.29 6.89 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.37 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.71 -14.04 5.03 -59.81 -0.30 -14.34 16 14 C 0.69 13.12 6.93 -86.92 -0.60 12.51 16 15 O -0.57 -12.44 10.64 5.28 0.06 -12.38 16 16 N -0.69 -10.48 4.98 -14.23 -0.07 -10.55 16 17 C 0.22 3.25 6.41 -83.69 -0.54 2.71 16 18 C -0.12 -1.83 8.71 -39.39 -0.34 -2.18 16 19 C -0.08 -1.05 10.04 -39.62 -0.40 -1.45 16 20 C -0.13 -1.48 9.78 -39.52 -0.39 -1.86 16 21 C -0.05 -0.62 6.22 -39.55 -0.25 -0.86 16 22 Br -0.05 -0.57 31.78 -68.01 -2.16 -2.73 16 23 C -0.11 -1.53 5.53 -104.41 -0.58 -2.11 16 24 C 0.10 1.11 5.04 36.00 0.18 1.30 16 25 O -0.38 -4.41 10.69 -35.23 -0.38 -4.79 16 26 C 0.03 0.24 11.01 101.05 1.11 1.35 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 29 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.39 6.57 8.56 -40.82 -0.35 6.22 16 34 H 0.40 5.16 7.42 -40.82 -0.30 4.85 16 35 H 0.16 2.79 5.79 -52.48 -0.30 2.48 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.06 0.64 6.98 -51.93 -0.36 0.27 16 39 H 0.07 0.74 6.65 -51.93 -0.35 0.39 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -28.94 360.47 -9.56 -38.50 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.57 Total: 11.08 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.18 Total: -1.94 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.25 Total: -48.26 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.32 Total: -17.17 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.16 Total: -2.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.94 -9.56 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097141421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.414 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds