Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 H 1.09002 * 109.47025 * 55.00095 * 3 2 1 5 5 C 1.50700 * 109.47289 * 175.00360 * 3 2 1 6 6 H 1.07997 * 120.00322 * 119.99849 * 5 3 2 7 7 C 1.37878 * 119.99816 * 300.00045 * 5 3 2 8 8 N 1.31514 * 120.00176 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47010 * 90.00031 * 9 7 5 11 11 H 1.48499 * 109.47067 * 210.00178 * 9 7 5 12 12 H 1.48505 * 109.46845 * 330.00243 * 9 7 5 13 13 N 1.46499 * 109.47161 * 295.00364 * 3 2 1 14 14 C 1.34773 * 120.00195 * 84.99941 * 13 3 2 15 15 O 1.21596 * 119.99975 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00598 * 180.02562 * 14 13 3 17 17 C 1.39939 * 120.00381 * 185.62137 * 16 14 13 18 18 C 1.38896 * 120.06774 * 24.81684 * 17 16 14 19 19 C 1.38096 * 119.95269 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.07807 * 359.97438 * 19 18 17 21 21 C 1.38349 * 120.13144 * 0.02562 * 20 19 18 22 22 Br 1.89100 * 119.97481 * 179.97438 * 21 20 19 23 23 C 1.38223 * 120.05173 * 359.97438 * 21 20 19 24 24 C 1.50693 * 120.03997 * 179.72759 * 23 21 20 25 25 O 1.42901 * 109.47492 * 90.00193 * 24 23 21 26 26 C 1.42898 * 114.00433 * 180.02562 * 25 24 23 27 27 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46636 * 299.99383 * 1 2 3 29 29 H 1.08995 * 109.47707 * 59.99781 * 1 2 3 30 30 H 1.08999 * 109.46980 * 240.00907 * 2 1 3 31 31 H 1.08995 * 109.47707 * 120.00219 * 2 1 3 32 32 H 0.96997 * 120.00380 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99852 * 264.99656 * 13 3 2 34 34 H 0.97005 * 119.99503 * 5.61894 * 16 14 13 35 35 H 1.08007 * 120.01975 * 0.04267 * 18 17 16 36 36 H 1.08003 * 119.96020 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.93280 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47387 * 209.99821 * 24 23 21 39 39 H 1.08999 * 109.47446 * 329.99506 * 24 23 21 40 40 H 1.09006 * 109.47115 * 299.99918 * 26 25 24 41 41 H 1.09002 * 109.47219 * 59.99000 * 26 25 24 42 42 H 1.08999 * 109.47454 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2278 8 7 3.4064 0.3366 2.1728 9 14 6.0051 0.8801 1.3810 10 1 6.4428 2.1130 2.0835 11 1 6.4392 -0.3109 2.1543 12 1 6.6131 0.8397 0.0267 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 7 0.0781 3.2666 -2.5186 17 6 -1.1366 3.9565 -2.6003 18 6 -1.7236 4.4705 -1.4512 19 6 -2.9227 5.1506 -1.5345 20 6 -3.5391 5.3208 -2.7606 21 6 -2.9574 4.8102 -3.9073 22 35 -3.8046 5.0449 -5.5815 23 6 -1.7573 4.1286 -3.8301 24 6 -1.1270 3.5673 -5.0785 25 8 -0.2596 4.5455 -5.6554 26 6 0.3918 4.1118 -6.8511 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8294 -0.0618 2.9493 33 1 2.2718 2.1233 -1.9978 34 1 0.6634 3.2217 -3.2909 35 1 -1.2425 4.3387 -0.4933 36 1 -3.3795 5.5499 -0.6411 37 1 -4.4771 5.8527 -2.8230 38 1 -0.5524 2.6760 -4.8262 39 1 -1.9070 3.3063 -5.7937 40 1 0.9978 3.2316 -6.6360 41 1 -0.3570 3.8624 -7.6029 42 1 1.0313 4.9106 -7.2267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097141421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -59.677986 kcal Electronic energy + Delta-G solvation = -25675.652727 eV Core-core repulsion = 21894.665020 eV Total energy + Delta-G solvation = -3780.987706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 370.068 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90858 -40.17560 -38.51233 -37.24699 -35.79929 -34.36492 -33.60103 -32.88143 -31.61621 -29.96243 -28.77315 -28.07526 -26.28722 -25.17370 -24.02214 -22.54179 -22.00656 -21.36631 -19.81440 -18.84322 -17.87027 -17.44727 -17.43877 -17.16043 -16.77355 -16.48974 -15.98987 -15.71924 -15.56009 -15.12754 -14.73804 -14.54395 -14.50575 -13.95748 -13.76845 -13.52080 -13.36564 -13.17736 -12.86989 -12.70405 -12.66489 -12.50747 -12.29955 -12.15200 -12.07508 -12.05650 -11.58530 -11.30961 -11.22753 -11.06397 -10.86901 -10.58569 -10.53259 -9.79733 -9.70745 -9.04215 -8.15661 -6.32409 0.03291 0.18583 0.54102 1.45908 1.46154 1.56210 1.71539 2.11576 2.42493 2.56293 3.04019 3.14242 3.37382 3.73001 3.78344 3.99780 4.22652 4.33092 4.43009 4.48720 4.51134 4.58088 4.58620 4.61547 4.68643 4.76576 4.90657 5.05550 5.11155 5.13228 5.28369 5.33567 5.41787 5.45171 5.55060 5.61431 5.73970 5.85946 5.89452 6.14581 6.16678 6.21797 6.75001 7.16697 7.35314 7.64508 8.89651 Molecular weight = 370.07amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.002470 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.513469 B =11331.438006 C =12147.631714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.713 5.713 14 C 0.694 3.306 15 O -0.602 6.602 16 N -0.674 5.674 17 C 0.192 3.808 18 C -0.143 4.143 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.060 4.060 22 Br -0.032 7.032 23 C -0.114 4.114 24 C 0.099 3.901 25 O -0.397 6.397 26 C 0.022 3.978 27 H 0.042 0.958 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.401 0.599 34 H 0.417 0.583 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 9.071 -19.403 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.185 1.185 13 N -0.365 5.365 14 C 0.395 3.605 15 O -0.482 6.482 16 N -0.322 5.322 17 C 0.093 3.907 18 C -0.164 4.164 19 C -0.101 4.101 20 C -0.138 4.138 21 C -0.140 4.140 22 Br 0.054 6.946 23 C -0.119 4.119 24 C 0.022 3.978 25 O -0.317 6.317 26 C -0.074 4.074 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.255 0.745 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.530 9.140 -18.895 24.973 hybrid contribution 1.701 -0.518 0.176 1.787 sum -11.829 8.622 -18.720 23.763 Atomic orbital electron populations 1.21645 0.96988 0.98928 1.00232 1.21808 0.93692 0.99209 1.01335 1.18302 0.93446 0.88845 0.80037 0.97876 1.21549 0.91343 1.38999 1.06732 0.91085 1.25712 1.03092 0.94381 0.95042 1.70035 1.36991 1.38223 1.09841 0.85403 0.79346 0.77365 0.78563 1.20556 1.21021 1.18519 1.45502 1.13631 1.58719 1.18619 1.16129 0.83095 0.78573 0.82709 1.90854 1.52362 1.65221 1.39760 1.42640 1.20696 1.54572 1.14276 1.17424 0.86286 0.93285 0.93659 1.21652 0.97954 0.98060 0.98705 1.21351 0.93720 0.96405 0.98609 1.21307 1.01397 1.00695 0.90382 1.21587 0.96513 1.02978 0.92927 1.96650 1.78213 1.96267 1.23503 1.19174 0.95163 1.04159 0.93446 1.21322 0.93926 0.90879 0.91651 1.87968 1.61208 1.40322 1.42170 1.22980 0.97001 1.01508 0.85870 0.93876 0.95352 0.94062 0.94109 0.90844 0.92568 0.76452 0.74532 0.85070 0.82500 0.82376 0.91855 0.90375 0.92956 0.92915 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.65 16 3 C 0.30 14.72 2.24 44.25 0.10 14.82 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -28.13 8.73 25.60 0.22 -27.91 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -51.01 11.29 21.45 0.24 -50.76 16 9 Si 0.97 41.21 29.54 68.60 2.03 43.23 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 13 N -0.71 -28.35 5.03 -461.40 -2.32 -30.67 16 14 C 0.69 26.90 6.93 179.06 1.24 28.14 16 15 O -0.60 -27.39 10.64 -4.02 -0.04 -27.43 16 16 N -0.67 -20.49 4.98 -317.18 -1.58 -22.07 16 17 C 0.19 5.74 6.41 38.15 0.24 5.98 16 18 C -0.14 -4.43 8.71 22.39 0.20 -4.24 16 19 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 20 C -0.12 -2.48 9.78 22.31 0.22 -2.26 16 21 C -0.06 -1.39 6.22 22.29 0.14 -1.25 16 22 Br -0.03 -0.61 31.78 -20.37 -0.65 -1.25 16 23 C -0.11 -2.91 5.53 -19.73 -0.11 -3.02 16 24 C 0.10 2.10 5.04 71.23 0.36 2.46 16 25 O -0.40 -8.51 10.69 -148.98 -1.59 -10.10 16 26 C 0.02 0.32 11.01 113.37 1.25 1.57 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.03 1.35 7.84 -2.38 -0.02 1.33 16 29 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 32 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.40 13.45 8.56 -92.71 -0.79 12.65 16 34 H 0.42 10.32 7.42 -92.70 -0.69 9.63 16 35 H 0.13 4.86 5.79 -2.91 -0.02 4.84 16 36 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.06 1.27 6.98 -2.38 -0.02 1.25 16 39 H 0.08 1.49 6.65 -2.39 -0.02 1.48 16 40 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -63.76 360.47 0.99 -62.78 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.41 Total: 32.69 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.31 Total: 3.60 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -3.66 Total: -103.51 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.63 Total: -37.54 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.65 Total: -1.25 kcal Total: -63.76 0.99 -62.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097141421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.099 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds