Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99592 * 2 1 4 4 H 1.48498 * 109.47082 * 269.99612 * 3 2 1 5 5 H 1.48502 * 109.47495 * 29.99959 * 3 2 1 6 6 H 1.48507 * 109.47165 * 149.99926 * 3 2 1 7 7 C 1.37880 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99715 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99737 * 180.02562 * 7 2 1 10 10 N 1.46508 * 109.46724 * 180.02562 * 9 7 2 11 11 N 1.40062 * 125.87275 * 269.97485 * 10 9 7 12 12 C 1.30247 * 109.69277 * 180.02562 * 11 10 9 13 13 C 1.41164 * 108.47489 * 359.97438 * 12 11 10 14 14 C 1.36311 * 125.87148 * 89.99729 * 10 9 7 15 15 N 1.33201 * 134.61933 * 359.96154 * 14 10 9 16 16 C 1.31496 * 120.68327 * 180.02562 * 15 14 10 17 17 N 1.32128 * 122.64886 * 359.71431 * 16 15 14 18 18 C 1.32857 * 121.18969 * 0.57934 * 17 16 15 19 19 N 1.38108 * 120.80925 * 179.71563 * 18 17 16 20 20 C 1.46492 * 120.00228 * 359.72209 * 19 18 17 21 21 H 1.09000 * 109.47152 * 35.00073 * 20 19 18 22 22 C 1.52999 * 109.47381 * 274.99849 * 20 19 18 23 23 C 1.52997 * 109.47592 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47165 * 60.00300 * 23 22 20 25 25 C 1.53002 * 109.46972 * 300.00293 * 24 23 22 26 26 H 1.09000 * 109.46986 * 299.99742 * 25 24 23 27 27 C 1.52996 * 109.47346 * 179.97438 * 25 24 23 28 28 F 1.39898 * 109.47139 * 299.99749 * 27 25 24 29 29 F 1.39905 * 109.47262 * 59.99438 * 27 25 24 30 30 F 1.39904 * 109.47514 * 179.97438 * 27 25 24 31 31 C 1.52997 * 109.47415 * 59.99860 * 25 24 23 32 32 H 0.96997 * 120.00577 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.47344 * 60.00155 * 9 7 2 34 34 H 1.09004 * 109.47222 * 299.99803 * 9 7 2 35 35 H 1.08004 * 125.76302 * 179.97438 * 12 11 10 36 36 H 1.08007 * 118.67551 * 180.02562 * 16 15 14 37 37 H 0.97006 * 119.99809 * 179.72127 * 19 18 17 38 38 H 1.09000 * 109.47160 * 300.00219 * 22 20 19 39 39 H 1.09002 * 109.46719 * 59.99939 * 22 20 19 40 40 H 1.09000 * 109.47140 * 300.00346 * 23 22 20 41 41 H 1.09001 * 109.47375 * 180.02562 * 23 22 20 42 42 H 1.08992 * 109.47534 * 180.02562 * 24 23 22 43 43 H 1.08996 * 109.47134 * 59.99508 * 24 23 22 44 44 H 1.09001 * 109.46922 * 180.02562 * 31 25 24 45 45 H 1.09000 * 109.47140 * 59.99976 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5752 0.0010 11 7 4.2736 -3.3491 1.1359 12 6 4.6911 -4.5282 0.7728 13 6 4.7097 -4.5814 -0.6377 14 6 4.2666 -3.3280 -1.1036 15 7 4.1931 -3.1205 -2.4173 16 6 4.5280 -4.0674 -3.2660 17 7 4.9542 -5.2558 -2.8763 18 6 5.0565 -5.5614 -1.5875 19 7 5.4975 -6.8080 -1.1889 20 6 5.8534 -7.8144 -2.1922 21 1 6.3051 -7.3239 -3.0545 22 6 4.5938 -8.5628 -2.6330 23 6 4.9653 -9.6134 -3.6813 24 6 5.9628 -10.6047 -3.0787 25 6 7.2224 -9.8564 -2.6378 26 1 7.6738 -9.3656 -3.5000 27 6 8.2196 -10.8475 -2.0346 28 9 7.6399 -11.4770 -0.9278 29 9 8.5595 -11.8087 -2.9927 30 9 9.3717 -10.1634 -1.6320 31 6 6.8509 -8.8058 -1.5895 32 1 -0.4851 0.8400 0.0004 33 1 3.8745 -0.6799 0.8911 34 1 3.8752 -0.6802 -0.8889 35 1 4.9751 -5.3298 1.4385 36 1 4.4564 -3.8639 -4.3243 37 1 5.5716 -7.0173 -0.2446 38 1 4.1421 -9.0533 -1.7708 39 1 3.8834 -7.8566 -3.0628 40 1 5.4168 -9.1226 -4.5435 41 1 4.0679 -10.1463 -3.9957 42 1 6.2278 -11.3530 -3.8256 43 1 5.5114 -11.0955 -2.2165 44 1 7.7482 -8.2724 -1.2758 45 1 6.3994 -9.2966 -0.7273 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -52.309509 kcal Electronic energy + Delta-G solvation = -33195.793296 eV Core-core repulsion = 28220.140320 eV Total energy + Delta-G solvation = -4975.652977 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.51444 -47.99316 -47.97503 -41.50293 -39.58134 -38.31973 -35.87403 -33.76736 -32.46773 -32.06178 -31.51648 -30.64006 -28.61056 -27.72380 -26.16182 -24.01639 -23.69434 -22.83230 -22.45025 -21.85943 -20.63018 -20.08450 -18.78419 -18.65339 -18.16027 -17.87845 -17.17168 -17.12644 -16.44588 -15.75946 -15.36928 -15.26593 -15.02218 -14.73903 -14.65278 -14.45596 -14.37961 -14.29785 -14.14556 -14.12048 -14.00605 -13.81986 -13.73408 -13.39690 -13.00588 -12.84323 -12.47512 -12.38025 -12.07364 -11.93604 -11.79433 -11.56030 -11.23313 -11.16603 -11.03733 -10.83314 -10.77056 -10.70011 -10.27785 -10.17017 -9.71097 -9.34212 -8.76684 -8.74487 -8.31117 -7.71892 -6.23475 -4.26136 1.22147 1.84878 2.29631 2.76903 2.91441 2.98237 3.20166 3.25766 3.27783 3.33050 3.55897 3.61474 4.18870 4.25009 4.28017 4.30947 4.38679 4.47358 4.62552 4.64420 4.69357 4.79757 4.85333 4.89595 4.97634 5.03498 5.07997 5.12300 5.36494 5.43800 5.45367 5.50243 5.61187 5.64124 5.71799 5.92335 6.00352 6.22893 6.47956 6.51216 6.82328 6.85563 7.14643 7.29243 7.38283 7.76935 8.08974 8.29488 8.71407 8.78635 9.31252 10.89218 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.001892 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.078247 B =14798.565110 C =15165.355278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.332 5.332 11 N -0.240 5.240 12 C 0.073 3.927 13 C -0.336 4.336 14 C 0.367 3.633 15 N -0.556 5.556 16 C 0.369 3.631 17 N -0.616 5.616 18 C 0.513 3.487 19 N -0.703 5.703 20 C 0.163 3.837 21 H 0.098 0.902 22 C -0.134 4.134 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.125 4.125 26 H 0.119 0.881 27 C 0.454 3.546 28 F -0.182 7.182 29 F -0.184 7.184 30 F -0.183 7.183 31 C -0.130 4.130 32 H 0.269 0.731 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.184 0.816 36 H 0.196 0.804 37 H 0.409 0.591 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.461 -23.578 -6.795 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.118 5.118 11 N -0.056 5.056 12 C -0.123 4.123 13 C -0.353 4.353 14 C 0.119 3.881 15 N -0.281 5.281 16 C 0.075 3.925 17 N -0.346 5.346 18 C 0.260 3.740 19 N -0.335 5.335 20 C 0.058 3.942 21 H 0.116 0.884 22 C -0.173 4.173 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.145 4.145 26 H 0.137 0.863 27 C 0.400 3.600 28 F -0.164 7.164 29 F -0.165 7.165 30 F -0.165 7.165 31 C -0.168 4.168 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.201 0.799 36 H 0.212 0.788 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.914 -22.288 -6.751 28.206 hybrid contribution 0.637 -0.032 0.704 0.950 sum 16.551 -22.320 -6.046 28.437 Atomic orbital electron populations 1.69865 1.06160 1.27387 1.49028 1.24772 0.94844 0.98838 0.93995 0.86875 0.80339 0.83617 0.79115 1.19487 1.20524 1.18877 1.21094 0.87861 0.95454 1.53197 0.90417 1.20090 0.96686 0.72479 0.98914 1.48957 1.50473 1.13227 0.99117 1.76952 1.16112 1.03626 1.08897 1.23397 1.00284 0.96204 0.92383 1.19584 1.22130 0.98291 0.95330 1.18903 0.92362 0.88376 0.88456 1.67502 1.24930 1.35720 0.99929 1.24420 0.86738 0.82145 0.99173 1.67941 1.28642 1.23582 1.14447 1.17858 0.84098 0.83818 0.88200 1.44326 1.70295 1.09938 1.08975 1.20784 0.94094 0.87472 0.91815 0.88399 1.22016 0.98125 0.98000 0.99146 1.21429 0.98847 0.96180 0.98410 1.21676 0.93672 0.98329 1.02161 1.22408 0.95945 0.95258 1.00938 0.86307 1.20616 0.81474 0.81480 0.76459 1.93176 1.84107 1.83893 1.55180 1.93183 1.93120 1.66309 1.63902 1.93195 1.52700 1.79416 1.91163 1.21889 1.00886 0.96196 0.97873 0.92133 0.93051 0.93088 0.79893 0.78797 0.75447 0.91691 0.90314 0.91031 0.90773 0.90397 0.90417 0.89769 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.54 -15.50 9.94 -34.44 -0.34 -15.84 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.24 5.88 5.26 -5.19 -0.03 5.86 16 10 N -0.33 -7.64 3.63 -61.64 -0.22 -7.86 16 11 N -0.24 -4.96 12.45 30.80 0.38 -4.57 16 12 C 0.07 1.17 11.87 -17.11 -0.20 0.96 16 13 C -0.34 -5.73 6.14 -106.82 -0.66 -6.38 16 14 C 0.37 7.74 8.04 -156.23 -1.26 6.49 16 15 N -0.56 -11.15 10.47 -13.97 -0.15 -11.30 16 16 C 0.37 5.76 12.24 -92.12 -1.13 4.63 16 17 N -0.62 -8.81 9.34 -13.62 -0.13 -8.93 16 18 C 0.51 7.15 7.53 -154.86 -1.17 5.99 16 19 N -0.70 -6.64 5.20 -53.60 -0.28 -6.92 16 20 C 0.16 1.21 2.49 -67.93 -0.17 1.04 16 21 H 0.10 0.83 7.57 -51.93 -0.39 0.44 16 22 C -0.13 -0.97 5.51 -26.73 -0.15 -1.12 16 23 C -0.11 -0.59 5.92 -26.73 -0.16 -0.75 16 24 C -0.12 -0.57 4.96 -26.73 -0.13 -0.71 16 25 C -0.13 -0.64 2.17 -90.62 -0.20 -0.84 16 26 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 27 C 0.45 3.07 2.69 37.16 0.10 3.17 16 28 F -0.18 -1.39 16.28 2.25 0.04 -1.35 16 29 F -0.18 -1.38 16.80 2.25 0.04 -1.34 16 30 F -0.18 -1.46 16.80 2.25 0.04 -1.42 16 31 C -0.13 -0.73 4.43 -26.73 -0.12 -0.84 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.05 1.25 7.20 -51.93 -0.37 0.87 16 34 H 0.05 1.24 7.57 -51.93 -0.39 0.85 16 35 H 0.18 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.20 2.25 8.06 -52.48 -0.42 1.83 16 37 H 0.41 3.05 8.47 -40.82 -0.35 2.70 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.33 7.80 -51.93 -0.41 -0.07 16 43 H 0.08 0.38 7.80 -51.93 -0.41 -0.02 16 44 H 0.08 0.49 7.80 -51.93 -0.41 0.08 16 45 H 0.08 0.43 7.80 -51.93 -0.41 0.02 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -34.05 382.99 -9.78 -43.82 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.68 Total: 0.28 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -5.70 Total: 3.84 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.38 Total: -65.68 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.11 Total: -4.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.05 -9.78 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.487 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds