Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00029 * 2 1 4 4 H 1.48497 * 109.47040 * 269.99810 * 3 2 1 5 5 H 1.48496 * 109.47246 * 30.00384 * 3 2 1 6 6 H 1.48504 * 109.47190 * 150.00172 * 3 2 1 7 7 C 1.37881 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00551 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99279 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46591 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87292 * 89.97759 * 10 9 7 12 12 C 1.30247 * 109.69654 * 179.97438 * 11 10 9 13 13 C 1.41168 * 108.46845 * 0.02562 * 12 11 10 14 14 C 1.36309 * 125.87362 * 269.97314 * 10 9 7 15 15 N 1.33202 * 134.62347 * 0.02562 * 14 10 9 16 16 C 1.31503 * 120.68549 * 180.02562 * 15 14 10 17 17 N 1.32126 * 122.64805 * 359.76792 * 16 15 14 18 18 C 1.32862 * 121.19147 * 0.47717 * 17 16 15 19 19 N 1.38110 * 120.81058 * 179.79427 * 18 17 16 20 20 C 1.46496 * 120.00352 * 359.72821 * 19 18 17 21 21 H 1.09004 * 109.46875 * 324.99432 * 20 19 18 22 22 C 1.53002 * 109.47421 * 84.99229 * 20 19 18 23 23 C 1.52997 * 109.47092 * 60.00300 * 22 20 19 24 24 C 1.53002 * 109.46978 * 59.99700 * 23 22 20 25 25 C 1.53002 * 109.47454 * 300.00078 * 24 23 22 26 26 H 1.09002 * 109.47067 * 300.00138 * 25 24 23 27 27 C 1.52997 * 109.47143 * 180.02562 * 25 24 23 28 28 F 1.39905 * 109.47157 * 299.99947 * 27 25 24 29 29 F 1.39900 * 109.47010 * 180.02562 * 27 25 24 30 30 F 1.39897 * 109.47422 * 60.00030 * 27 25 24 31 31 C 1.52997 * 109.47092 * 59.99992 * 25 24 23 32 32 H 0.97002 * 120.00223 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47135 * 60.00378 * 9 7 2 34 34 H 1.08992 * 109.47261 * 299.99967 * 9 7 2 35 35 H 1.08003 * 125.76303 * 179.97438 * 12 11 10 36 36 H 1.07999 * 118.67474 * 179.97438 * 16 15 14 37 37 H 0.97001 * 119.99402 * 179.71871 * 19 18 17 38 38 H 1.09002 * 109.47067 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.47312 * 300.00180 * 22 20 19 40 40 H 1.08988 * 109.47529 * 180.02562 * 23 22 20 41 41 H 1.09002 * 109.46777 * 300.00347 * 23 22 20 42 42 H 1.09004 * 109.47006 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47097 * 60.00199 * 24 23 22 44 44 H 1.09002 * 109.46777 * 59.99653 * 31 25 24 45 45 H 1.08998 * 109.47624 * 179.97438 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 7 4.2724 -3.3496 -1.1359 12 6 4.6901 -4.5287 -0.7729 13 6 4.7098 -4.5815 0.6376 14 6 4.2669 -3.3280 1.1036 15 7 4.1943 -3.1204 2.4173 16 6 4.5304 -4.0670 3.2660 17 7 4.9476 -5.2585 2.8762 18 6 5.0587 -5.5609 1.5872 19 7 5.4996 -6.8076 1.1886 20 6 5.8572 -7.8135 2.1918 21 1 6.3099 -7.3225 3.0533 22 6 4.5985 -8.5621 2.6347 23 6 3.9631 -9.2513 1.4255 24 6 4.9599 -10.2423 0.8212 25 6 6.2186 -9.4937 0.3784 26 1 5.9525 -8.7453 -0.3681 27 6 7.2151 -10.4846 -0.2265 28 9 7.5568 -11.4456 0.7312 29 9 8.3663 -9.8002 -0.6309 30 9 6.6338 -11.1144 -1.3322 31 6 6.8541 -8.8045 1.5875 32 1 -0.4850 0.8400 0.0004 33 1 3.8751 -0.6805 0.8888 34 1 3.8744 -0.6801 -0.8911 35 1 4.9728 -5.3308 -1.4387 36 1 4.4595 -3.8633 4.3242 37 1 5.5724 -7.0171 0.2443 38 1 4.8646 -9.3102 3.3814 39 1 3.8884 -7.8561 3.0652 40 1 3.0662 -9.7842 1.7408 41 1 3.6970 -8.5028 0.6791 42 1 4.5073 -10.7330 -0.0405 43 1 5.2260 -10.9907 1.5677 44 1 7.1201 -9.5529 2.3340 45 1 7.7510 -8.2715 1.2722 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = -49.010757 kcal Electronic energy + Delta-G solvation = -33771.088529 eV Core-core repulsion = 28795.578597 eV Total energy + Delta-G solvation = -4975.509932 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.49814 -47.97245 -47.96089 -41.52618 -39.81993 -38.30060 -35.50867 -33.73622 -32.40122 -32.03113 -31.50623 -30.75439 -28.78104 -27.74402 -26.14867 -24.03497 -23.64247 -22.92653 -22.43307 -22.19734 -20.49405 -19.75548 -18.79750 -18.62815 -18.30630 -17.68887 -17.16210 -17.13089 -16.40475 -15.87620 -15.51952 -15.34077 -14.95296 -14.74156 -14.68579 -14.40872 -14.37782 -14.27551 -14.12479 -14.10365 -13.90609 -13.74306 -13.66297 -13.32757 -12.88516 -12.60351 -12.55859 -12.48497 -12.39800 -12.05185 -11.90239 -11.53162 -11.19234 -11.13331 -11.03161 -10.76093 -10.73471 -10.60205 -10.28820 -10.15958 -9.71593 -9.34660 -8.77433 -8.74325 -8.31703 -7.72356 -6.23919 -4.26592 1.21872 1.84839 2.32952 2.78198 2.92724 2.99980 3.19096 3.26157 3.27614 3.33151 3.52432 3.57040 4.19929 4.22964 4.24709 4.31007 4.43624 4.47340 4.60737 4.63754 4.71676 4.76438 4.88365 4.89178 4.99546 5.07303 5.09511 5.17996 5.36467 5.43178 5.45380 5.48337 5.61158 5.67766 5.79176 5.93081 5.98823 6.22855 6.44756 6.52831 6.81000 6.84826 7.13929 7.28772 7.37115 7.76025 8.08159 8.29066 8.71312 8.78164 9.30859 10.88822 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.002160 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.216905 B =12962.486338 C =13388.532991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.332 5.332 11 N -0.240 5.240 12 C 0.072 3.928 13 C -0.337 4.337 14 C 0.368 3.632 15 N -0.556 5.556 16 C 0.369 3.631 17 N -0.615 5.615 18 C 0.512 3.488 19 N -0.703 5.703 20 C 0.163 3.837 21 H 0.103 0.897 22 C -0.133 4.133 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.134 4.134 26 H 0.111 0.889 27 C 0.454 3.546 28 F -0.182 7.182 29 F -0.183 7.183 30 F -0.183 7.183 31 C -0.128 4.128 32 H 0.269 0.731 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.183 0.817 36 H 0.196 0.804 37 H 0.405 0.595 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.217 -23.091 3.976 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.118 5.118 11 N -0.056 5.056 12 C -0.124 4.124 13 C -0.354 4.354 14 C 0.120 3.880 15 N -0.281 5.281 16 C 0.075 3.925 17 N -0.345 5.345 18 C 0.260 3.740 19 N -0.337 5.337 20 C 0.058 3.942 21 H 0.121 0.879 22 C -0.172 4.172 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.153 4.153 26 H 0.129 0.871 27 C 0.400 3.600 28 F -0.164 7.164 29 F -0.164 7.164 30 F -0.165 7.165 31 C -0.166 4.166 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.200 0.800 36 H 0.212 0.788 37 H 0.242 0.758 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.662 -21.821 3.948 26.584 hybrid contribution 0.597 -0.012 -0.816 1.011 sum 15.259 -21.832 3.131 26.820 Atomic orbital electron populations 1.69869 1.06171 1.27396 1.49022 1.24772 0.94839 0.98837 0.93979 0.86871 0.80472 0.83624 0.78972 1.19660 1.20458 1.18757 1.21098 0.87866 0.95459 1.53216 0.90415 1.20098 0.96691 0.72467 0.98918 1.48960 1.50492 1.13213 0.99126 1.76950 1.16082 1.03594 1.08940 1.23372 1.00400 0.96218 0.92377 1.19591 1.22143 0.98383 0.95306 1.18885 0.92324 0.88340 0.88441 1.67506 1.24803 1.35848 0.99933 1.24426 0.86748 0.82111 0.99175 1.67943 1.28698 1.23448 1.14427 1.17866 0.84089 0.83842 0.88180 1.44465 1.70341 1.10006 1.08839 1.20840 0.94138 0.87410 0.91796 0.87882 1.21992 0.97815 0.99723 0.97680 1.21462 0.97707 0.97946 0.98192 1.21651 0.93513 0.98416 1.01989 1.22519 0.95226 0.97002 1.00591 0.87061 1.20620 0.81508 0.81542 0.76374 1.93172 1.93078 1.66259 1.63872 1.93195 1.52784 1.79398 1.91072 1.93189 1.84064 1.83931 1.55275 1.21968 0.98952 0.99185 0.96532 0.92127 0.92629 0.93494 0.80035 0.78795 0.75763 0.90865 0.90279 0.91007 0.91305 0.90507 0.90355 0.88820 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.54 -15.49 9.94 -34.44 -0.34 -15.83 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 9 C 0.24 5.87 5.26 -5.19 -0.03 5.84 16 10 N -0.33 -7.61 3.63 -61.64 -0.22 -7.84 16 11 N -0.24 -4.92 12.45 30.80 0.38 -4.54 16 12 C 0.07 1.14 11.87 -17.11 -0.20 0.94 16 13 C -0.34 -5.69 6.14 -106.82 -0.66 -6.34 16 14 C 0.37 7.73 8.04 -156.23 -1.26 6.47 16 15 N -0.56 -11.12 10.47 -13.97 -0.15 -11.27 16 16 C 0.37 5.73 12.24 -92.12 -1.13 4.60 16 17 N -0.61 -8.69 9.35 -13.62 -0.13 -8.82 16 18 C 0.51 7.02 7.53 -154.85 -1.17 5.85 16 19 N -0.70 -6.40 4.35 -53.60 -0.23 -6.63 16 20 C 0.16 1.17 2.81 -67.93 -0.19 0.98 16 21 H 0.10 0.85 7.58 -51.93 -0.39 0.46 16 22 C -0.13 -0.93 5.61 -26.73 -0.15 -1.08 16 23 C -0.12 -0.74 5.77 -26.73 -0.15 -0.89 16 24 C -0.12 -0.63 4.96 -26.73 -0.13 -0.76 16 25 C -0.13 -0.72 1.99 -90.62 -0.18 -0.91 16 26 H 0.11 0.52 6.51 -51.93 -0.34 0.18 16 27 C 0.45 3.18 2.69 37.16 0.10 3.28 16 28 F -0.18 -1.38 16.28 2.25 0.04 -1.34 16 29 F -0.18 -1.48 16.80 2.25 0.04 -1.44 16 30 F -0.18 -1.48 16.80 2.25 0.04 -1.44 16 31 C -0.13 -0.69 4.65 -26.73 -0.12 -0.81 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 33 H 0.06 1.37 7.20 -51.93 -0.37 1.00 16 34 H 0.05 1.12 7.57 -51.93 -0.39 0.73 16 35 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.20 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.41 2.98 6.73 -40.82 -0.27 2.71 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.45 8.14 -51.94 -0.42 0.03 16 41 H 0.07 0.52 7.60 -51.93 -0.39 0.13 16 42 H 0.08 0.41 7.80 -51.93 -0.41 0.00 16 43 H 0.08 0.39 7.80 -51.93 -0.41 -0.02 16 44 H 0.09 0.43 7.80 -51.93 -0.41 0.03 16 45 H 0.08 0.47 7.80 -51.93 -0.41 0.07 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -33.85 378.58 -9.63 -43.48 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.49 Total: 0.65 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -5.71 Total: 3.52 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 0.43 Total: -65.18 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.85 -9.63 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.531 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds