Wall clock time and date at job start Tue Mar 31 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00029 * 2 1 4 4 H 1.48497 * 109.47040 * 269.99810 * 3 2 1 5 5 H 1.48496 * 109.47246 * 30.00384 * 3 2 1 6 6 H 1.48504 * 109.47190 * 150.00172 * 3 2 1 7 7 C 1.37881 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00551 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99279 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46591 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87292 * 89.97759 * 10 9 7 12 12 C 1.30247 * 109.69654 * 179.97438 * 11 10 9 13 13 C 1.41168 * 108.46845 * 0.02562 * 12 11 10 14 14 C 1.36309 * 125.87362 * 269.97314 * 10 9 7 15 15 N 1.33202 * 134.62347 * 0.02562 * 14 10 9 16 16 C 1.31503 * 120.68549 * 180.02562 * 15 14 10 17 17 N 1.32126 * 122.64805 * 359.76792 * 16 15 14 18 18 C 1.32862 * 121.19147 * 0.47717 * 17 16 15 19 19 N 1.38110 * 120.81058 * 179.79427 * 18 17 16 20 20 C 1.46496 * 120.00352 * 359.72821 * 19 18 17 21 21 H 1.09004 * 109.46875 * 324.99432 * 20 19 18 22 22 C 1.53002 * 109.47421 * 84.99229 * 20 19 18 23 23 C 1.52997 * 109.47092 * 60.00300 * 22 20 19 24 24 C 1.53002 * 109.46978 * 59.99700 * 23 22 20 25 25 C 1.53002 * 109.47454 * 300.00078 * 24 23 22 26 26 H 1.09002 * 109.47067 * 300.00138 * 25 24 23 27 27 C 1.52997 * 109.47143 * 180.02562 * 25 24 23 28 28 F 1.39905 * 109.47157 * 299.99947 * 27 25 24 29 29 F 1.39900 * 109.47010 * 180.02562 * 27 25 24 30 30 F 1.39897 * 109.47422 * 60.00030 * 27 25 24 31 31 C 1.52997 * 109.47092 * 59.99992 * 25 24 23 32 32 H 0.97002 * 120.00223 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47135 * 60.00378 * 9 7 2 34 34 H 1.08992 * 109.47261 * 299.99967 * 9 7 2 35 35 H 1.08003 * 125.76303 * 179.97438 * 12 11 10 36 36 H 1.07999 * 118.67474 * 179.97438 * 16 15 14 37 37 H 0.97001 * 119.99402 * 179.71871 * 19 18 17 38 38 H 1.09002 * 109.47067 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.47312 * 300.00180 * 22 20 19 40 40 H 1.08988 * 109.47529 * 180.02562 * 23 22 20 41 41 H 1.09002 * 109.46777 * 300.00347 * 23 22 20 42 42 H 1.09004 * 109.47006 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47097 * 60.00199 * 24 23 22 44 44 H 1.09002 * 109.46777 * 59.99653 * 31 25 24 45 45 H 1.08998 * 109.47624 * 179.97438 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 7 4.2724 -3.3496 -1.1359 12 6 4.6901 -4.5287 -0.7729 13 6 4.7098 -4.5815 0.6376 14 6 4.2669 -3.3280 1.1036 15 7 4.1943 -3.1204 2.4173 16 6 4.5304 -4.0670 3.2660 17 7 4.9476 -5.2585 2.8762 18 6 5.0587 -5.5609 1.5872 19 7 5.4996 -6.8076 1.1886 20 6 5.8572 -7.8135 2.1918 21 1 6.3099 -7.3225 3.0533 22 6 4.5985 -8.5621 2.6347 23 6 3.9631 -9.2513 1.4255 24 6 4.9599 -10.2423 0.8212 25 6 6.2186 -9.4937 0.3784 26 1 5.9525 -8.7453 -0.3681 27 6 7.2151 -10.4846 -0.2265 28 9 7.5568 -11.4456 0.7312 29 9 8.3663 -9.8002 -0.6309 30 9 6.6338 -11.1144 -1.3322 31 6 6.8541 -8.8045 1.5875 32 1 -0.4850 0.8400 0.0004 33 1 3.8751 -0.6805 0.8888 34 1 3.8744 -0.6801 -0.8911 35 1 4.9728 -5.3308 -1.4387 36 1 4.4595 -3.8633 4.3242 37 1 5.5724 -7.0171 0.2443 38 1 4.8646 -9.3102 3.3814 39 1 3.8884 -7.8561 3.0652 40 1 3.0662 -9.7842 1.7408 41 1 3.6970 -8.5028 0.6791 42 1 4.5073 -10.7330 -0.0405 43 1 5.2260 -10.9907 1.5677 44 1 7.1201 -9.5529 2.3340 45 1 7.7510 -8.2715 1.2722 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:20 Heat of formation + Delta-G solvation = -68.866519 kcal Electronic energy + Delta-G solvation = -33771.949540 eV Core-core repulsion = 28795.578597 eV Total energy + Delta-G solvation = -4976.370942 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.06246 -48.55441 -48.52588 -42.84400 -40.58025 -39.48789 -36.51454 -35.59888 -33.86221 -33.00002 -32.62501 -31.71591 -29.92648 -29.45135 -26.68758 -25.37716 -25.05876 -24.04776 -23.38966 -22.85975 -21.71710 -20.58297 -19.58813 -19.28416 -19.23762 -19.16886 -18.60736 -18.26072 -17.56612 -16.78873 -16.70155 -16.29864 -16.09454 -15.56723 -15.47160 -15.34467 -15.30373 -15.17477 -15.14694 -14.95577 -14.70098 -14.69062 -14.58335 -14.33789 -14.23242 -13.90328 -13.75221 -13.16695 -13.13926 -13.07814 -12.98762 -12.65098 -12.63448 -12.35279 -12.28698 -12.09214 -11.86145 -11.64633 -11.48694 -11.36184 -11.19311 -10.92080 -10.56700 -10.06074 -9.75429 -8.97258 -8.43687 -6.53795 -0.03259 0.53316 1.27909 1.32969 1.39169 1.46044 1.62461 1.80227 2.02021 2.24286 2.81346 2.88141 3.00220 3.02821 3.06931 3.27485 3.38833 3.64437 3.70858 3.73237 3.79926 3.95821 4.06582 4.10305 4.16393 4.29534 4.38001 4.42003 4.50977 4.60014 4.65943 4.72666 4.84556 4.99169 5.00168 5.07950 5.17252 5.20155 5.27349 5.39122 5.42073 5.52094 5.69650 5.88667 6.08885 6.20211 6.45322 6.55437 6.75563 7.08955 7.45898 8.73419 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.002160 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.216905 B =12962.486338 C =13388.532991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.548 4.548 8 H 0.020 0.980 9 C 0.251 3.749 10 N -0.367 5.367 11 N -0.288 5.288 12 C 0.101 3.899 13 C -0.346 4.346 14 C 0.339 3.661 15 N -0.606 5.606 16 C 0.377 3.623 17 N -0.608 5.608 18 C 0.523 3.477 19 N -0.679 5.679 20 C 0.163 3.837 21 H 0.099 0.901 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.130 4.130 26 H 0.121 0.879 27 C 0.454 3.546 28 F -0.185 7.185 29 F -0.190 7.190 30 F -0.190 7.190 31 C -0.120 4.120 32 H 0.274 0.726 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.238 0.762 36 H 0.230 0.770 37 H 0.417 0.583 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.695 -24.756 4.388 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.586 4.586 8 H 0.039 0.961 9 C 0.131 3.869 10 N -0.154 5.154 11 N -0.103 5.103 12 C -0.094 4.094 13 C -0.364 4.364 14 C 0.093 3.907 15 N -0.334 5.334 16 C 0.084 3.916 17 N -0.338 5.338 18 C 0.268 3.732 19 N -0.311 5.311 20 C 0.059 3.941 21 H 0.117 0.883 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.149 4.149 26 H 0.139 0.861 27 C 0.400 3.600 28 F -0.167 7.167 29 F -0.171 7.171 30 F -0.172 7.172 31 C -0.158 4.158 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.254 0.746 36 H 0.246 0.754 37 H 0.256 0.744 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.179 -23.586 4.348 29.501 hybrid contribution -0.159 0.155 -0.848 0.876 sum 17.020 -23.431 3.501 29.171 Atomic orbital electron populations 1.70026 1.08309 1.28932 1.50312 1.25829 0.95773 1.03327 0.92958 0.85649 0.79479 0.77572 0.79934 1.18104 1.19638 1.16883 1.21209 0.90294 0.93510 1.53577 0.96134 1.19640 0.93647 0.74776 0.98844 1.48726 1.52900 1.13123 1.00610 1.76889 1.19223 1.05377 1.08833 1.24250 0.96670 0.95720 0.92784 1.19759 1.22740 0.97800 0.96106 1.19343 0.92873 0.89728 0.88780 1.67515 1.27646 1.38044 1.00171 1.25182 0.84581 0.81689 1.00122 1.68100 1.28749 1.22652 1.14339 1.17960 0.83044 0.84698 0.87470 1.44607 1.67812 1.08513 1.10208 1.20992 0.94771 0.87093 0.91231 0.88322 1.21951 0.96935 0.99612 0.98341 1.21418 0.98131 0.97882 0.97589 1.21606 0.93002 0.98163 1.02253 1.22536 0.94770 0.96849 1.00784 0.86063 1.20796 0.81469 0.81590 0.76135 1.93168 1.93136 1.66497 1.63895 1.93185 1.53271 1.79487 1.91164 1.93178 1.84135 1.84124 1.55731 1.21917 0.98232 0.98888 0.96772 0.91669 0.92818 0.92788 0.74632 0.75421 0.74377 0.88940 0.92754 0.90859 0.92457 0.90269 0.89560 0.87362 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.02 1.22 5.47 84.66 0.46 1.68 16 3 Si 0.95 43.39 27.47 68.60 1.88 45.27 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.25 -10.40 6.54 99.48 0.65 -9.74 16 7 C -0.55 -33.28 9.94 25.60 0.25 -33.02 16 8 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 9 C 0.25 12.90 5.26 85.63 0.45 13.35 16 10 N -0.37 -17.46 3.63 -348.94 -1.27 -18.72 16 11 N -0.29 -11.99 12.45 -56.46 -0.70 -12.70 16 12 C 0.10 3.07 11.87 85.65 1.02 4.09 16 13 C -0.35 -11.44 6.14 -21.29 -0.13 -11.57 16 14 C 0.34 14.59 8.04 134.15 1.08 15.67 16 15 N -0.61 -24.75 10.47 -198.10 -2.07 -26.82 16 16 C 0.38 11.44 12.24 180.87 2.21 13.65 16 17 N -0.61 -16.24 9.35 -197.01 -1.84 -18.08 16 18 C 0.52 13.36 7.53 133.64 1.01 14.37 16 19 N -0.68 -10.38 4.35 -323.48 -1.41 -11.79 16 20 C 0.16 1.83 2.81 44.99 0.13 1.96 16 21 H 0.10 1.32 7.58 -2.38 -0.02 1.30 16 22 C -0.13 -1.48 5.61 30.59 0.17 -1.30 16 23 C -0.11 -1.16 5.77 30.59 0.18 -0.98 16 24 C -0.11 -0.85 4.96 30.60 0.15 -0.70 16 25 C -0.13 -0.98 1.99 -10.79 -0.02 -1.00 16 26 H 0.12 0.68 6.51 -2.39 -0.02 0.67 16 27 C 0.45 5.11 2.69 71.98 0.19 5.30 16 28 F -0.19 -2.30 16.28 44.97 0.73 -1.57 16 29 F -0.19 -2.58 16.80 44.97 0.76 -1.82 16 30 F -0.19 -2.63 16.80 44.97 0.76 -1.88 16 31 C -0.12 -0.86 4.65 30.59 0.14 -0.71 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.05 2.72 7.20 -2.39 -0.02 2.70 16 34 H 0.05 2.64 7.57 -2.39 -0.02 2.62 16 35 H 0.24 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.23 4.93 8.06 -2.91 -0.02 4.91 16 37 H 0.42 4.60 6.73 -92.71 -0.62 3.98 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.73 7.60 -2.39 -0.02 0.71 16 42 H 0.08 0.61 7.80 -2.38 -0.02 0.59 16 43 H 0.09 0.56 7.80 -2.39 -0.02 0.54 16 44 H 0.11 0.56 7.80 -2.39 -0.02 0.54 16 45 H 0.09 0.65 7.80 -2.39 -0.02 0.63 16 Total: -1.00 -80.08 378.58 4.81 -75.28 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.38 Total: 10.79 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 7.29 Total: 20.79 kcal Atomic # 7 Polarization: -139.87 SS G_CDS: -6.99 Total: -146.86 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 2.24 Total: -5.26 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -80.08 4.81 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.411 kcal (2) G-P(sol) polarization free energy of solvation -80.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds