Wall clock time and date at job start Tue Mar 31 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 N 1.40064 * 125.87463 * 90.02199 * 10 9 7 12 12 C 1.30251 * 109.69527 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.47014 * 359.97438 * 12 11 10 14 14 C 1.36314 * 125.87284 * 269.71875 * 10 9 7 15 15 N 1.33205 * 134.61802 * 0.02778 * 14 10 9 16 16 C 1.31506 * 120.68482 * 179.97438 * 15 14 10 17 17 N 1.32125 * 122.64781 * 0.02562 * 16 15 14 18 18 C 1.32875 * 121.19082 * 359.62994 * 17 16 15 19 19 N 1.38103 * 120.80930 * 179.91341 * 18 17 16 20 20 C 1.46495 * 120.00264 * 0.66569 * 19 18 17 21 21 H 1.09002 * 109.47183 * 35.00369 * 20 19 18 22 22 C 1.52998 * 109.47384 * 275.00005 * 20 19 18 23 23 C 1.53006 * 109.46964 * 299.99910 * 22 20 19 24 24 C 1.52993 * 109.47214 * 299.99747 * 23 22 20 25 25 C 1.53007 * 109.47043 * 60.00099 * 24 23 22 26 26 H 1.08996 * 109.47115 * 59.99666 * 25 24 23 27 27 C 1.53001 * 109.46807 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47461 * 59.99810 * 27 25 24 29 29 F 1.39906 * 109.46879 * 179.97438 * 27 25 24 30 30 F 1.39898 * 109.47342 * 299.99434 * 27 25 24 31 31 C 1.53002 * 109.46947 * 299.99654 * 25 24 23 32 32 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 33 33 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 34 34 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 35 35 H 1.07996 * 125.76616 * 180.02562 * 12 11 10 36 36 H 1.07999 * 118.67412 * 179.97438 * 16 15 14 37 37 H 0.97005 * 119.99934 * 180.66032 * 19 18 17 38 38 H 1.09002 * 109.46959 * 59.99454 * 22 20 19 39 39 H 1.08996 * 109.47280 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.47205 * 59.99818 * 23 22 20 41 41 H 1.08996 * 109.47102 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.47122 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47438 * 299.99962 * 24 23 22 44 44 H 1.08996 * 109.47223 * 299.99945 * 31 25 24 45 45 H 1.09000 * 109.47156 * 179.97438 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 7 2.7360 -4.2318 1.1541 12 6 3.5486 -5.1845 0.7953 13 6 3.5849 -5.2339 -0.6151 14 6 2.7179 -4.2282 -1.0855 15 7 2.5704 -4.0706 -2.3999 16 6 3.2202 -4.8403 -3.2453 17 7 4.0416 -5.7973 -2.8513 18 6 4.2606 -6.0283 -1.5612 19 7 5.1194 -7.0319 -1.1582 20 6 5.8132 -7.8477 -2.1578 21 1 6.0592 -7.2313 -3.0225 22 6 4.9064 -9.0001 -2.5942 23 6 4.5613 -9.8652 -1.3803 24 6 5.8475 -10.4299 -0.7742 25 6 6.7544 -9.2774 -0.3378 26 1 6.2382 -8.6704 0.4059 27 6 8.0410 -9.8422 0.2678 28 9 8.7033 -10.6209 -0.6873 29 9 8.8705 -8.7884 0.6663 30 9 7.7259 -10.6334 1.3776 31 6 7.0996 -8.4123 -1.5517 32 1 -0.4850 0.8401 -0.0041 33 1 0.6241 -2.5528 0.9015 34 1 0.6247 -2.5609 -0.8785 35 1 4.1006 -5.8285 1.4638 36 1 3.0761 -4.6844 -4.3042 37 1 5.2634 -7.1966 -0.2131 38 1 3.9900 -8.5978 -3.0260 39 1 5.4228 -9.6073 -3.3376 40 1 4.0450 -9.2583 -0.6365 41 1 3.9149 -10.6860 -1.6911 42 1 5.6017 -11.0458 0.0908 43 1 6.3637 -11.0368 -1.5179 44 1 7.6158 -9.0193 -2.2954 45 1 7.7453 -7.5911 -1.2407 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:25 Heat of formation + Delta-G solvation = -54.551651 kcal Electronic energy + Delta-G solvation = -33725.693172 eV Core-core repulsion = 28749.942969 eV Total energy + Delta-G solvation = -4975.750203 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.48917 -47.96422 -47.95104 -41.45317 -39.80037 -38.23388 -35.47044 -33.72678 -32.37640 -32.02412 -31.30669 -30.70423 -28.72413 -27.19595 -26.14432 -24.00086 -23.70532 -23.06518 -22.47990 -22.18491 -20.49035 -19.74140 -18.78898 -18.61892 -18.29257 -17.66424 -17.12194 -16.68051 -16.33579 -15.86150 -15.49334 -15.25150 -14.93224 -14.72083 -14.66100 -14.61146 -14.37082 -14.22912 -14.11573 -14.09452 -13.82488 -13.68098 -13.46205 -13.37020 -12.98272 -12.60026 -12.52071 -12.40210 -12.17081 -11.90556 -11.66796 -11.48193 -11.14753 -11.08433 -10.98282 -10.76375 -10.74445 -10.60118 -10.29486 -10.10825 -9.86261 -9.28884 -8.70187 -8.60133 -8.25892 -7.67653 -6.22708 -4.29342 1.27953 1.90953 2.33770 2.87853 2.99694 3.07842 3.25895 3.28977 3.33851 3.33978 3.53093 3.57680 4.20599 4.23801 4.30242 4.37395 4.44449 4.51559 4.62421 4.71116 4.71664 4.76112 4.88841 4.93793 5.03968 5.11872 5.13117 5.19385 5.38897 5.43985 5.46754 5.50012 5.66949 5.68713 5.78727 5.91287 5.97164 6.30604 6.65161 6.86615 7.01508 7.08402 7.20142 7.46508 7.70343 7.88207 7.90520 8.20302 8.70275 8.80258 9.35691 10.85491 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002172 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.147676 B =12886.889580 C =13493.305677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.242 5.242 12 C 0.067 3.933 13 C -0.338 4.338 14 C 0.364 3.636 15 N -0.554 5.554 16 C 0.366 3.634 17 N -0.616 5.616 18 C 0.511 3.489 19 N -0.703 5.703 20 C 0.163 3.837 21 H 0.103 0.897 22 C -0.133 4.133 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.134 4.134 26 H 0.111 0.889 27 C 0.453 3.547 28 F -0.182 7.182 29 F -0.183 7.183 30 F -0.184 7.184 31 C -0.129 4.129 32 H 0.268 0.732 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.181 0.819 36 H 0.194 0.806 37 H 0.405 0.595 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.223 -23.864 -3.785 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.128 4.128 13 C -0.355 4.355 14 C 0.116 3.884 15 N -0.278 5.278 16 C 0.072 3.928 17 N -0.347 5.347 18 C 0.259 3.741 19 N -0.337 5.337 20 C 0.058 3.942 21 H 0.121 0.879 22 C -0.171 4.171 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.153 4.153 26 H 0.130 0.870 27 C 0.399 3.601 28 F -0.164 7.164 29 F -0.164 7.164 30 F -0.165 7.165 31 C -0.167 4.167 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.198 0.802 36 H 0.211 0.789 37 H 0.242 0.758 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.267 -22.806 -3.751 26.649 hybrid contribution 1.201 0.330 0.797 1.479 sum 14.468 -22.475 -2.954 26.892 Atomic orbital electron populations 1.69909 1.06006 1.27760 1.49222 1.24897 0.94982 0.99350 0.94412 0.86402 0.79448 0.81863 0.78880 1.19954 1.20874 1.20014 1.21203 0.93506 0.89684 1.52912 0.92111 1.19789 0.85678 0.79841 0.99970 1.49469 1.35930 1.27590 0.98808 1.76947 1.11457 1.08109 1.09285 1.23345 0.99167 0.97932 0.92374 1.19617 1.12478 1.08146 0.95304 1.18941 0.91109 0.89877 0.88520 1.67515 1.29631 1.30611 1.00087 1.24409 0.85256 0.83929 0.99188 1.67938 1.26521 1.25909 1.14300 1.17872 0.84147 0.83866 0.88225 1.44450 1.46514 1.34009 1.08770 1.20828 0.89637 0.91776 0.91946 0.87906 1.21988 1.01149 0.96387 0.97622 1.21459 0.96014 0.99604 0.98164 1.21645 0.96238 0.95694 1.01980 1.22518 0.92188 1.00021 1.00594 0.87048 1.20621 0.86990 0.76078 0.76367 1.93170 1.83050 1.76118 1.64049 1.93202 1.74838 1.57134 1.91219 1.93186 1.92816 1.75505 1.54992 1.21976 0.98609 0.99679 0.96436 0.92191 0.92831 0.92258 0.80245 0.78911 0.75803 0.90322 0.90900 0.91347 0.91097 0.90544 0.90363 0.88835 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.26 6.99 6.19 -5.20 -0.03 6.96 16 10 N -0.33 -7.81 3.63 -61.65 -0.22 -8.03 16 11 N -0.24 -5.08 12.45 30.80 0.38 -4.70 16 12 C 0.07 1.09 11.87 -17.11 -0.20 0.89 16 13 C -0.34 -5.82 6.14 -106.82 -0.66 -6.47 16 14 C 0.36 7.79 8.04 -156.22 -1.26 6.53 16 15 N -0.55 -11.31 10.47 -13.97 -0.15 -11.46 16 16 C 0.37 5.81 12.24 -92.12 -1.13 4.68 16 17 N -0.62 -8.88 9.35 -13.62 -0.13 -9.01 16 18 C 0.51 7.14 7.53 -154.84 -1.17 5.97 16 19 N -0.70 -6.56 4.35 -53.60 -0.23 -6.79 16 20 C 0.16 1.20 2.81 -67.93 -0.19 1.00 16 21 H 0.10 0.89 7.58 -51.93 -0.39 0.50 16 22 C -0.13 -0.89 5.61 -26.73 -0.15 -1.04 16 23 C -0.11 -0.68 5.77 -26.73 -0.15 -0.83 16 24 C -0.12 -0.60 4.96 -26.73 -0.13 -0.73 16 25 C -0.13 -0.73 1.99 -90.61 -0.18 -0.91 16 26 H 0.11 0.53 6.50 -51.93 -0.34 0.19 16 27 C 0.45 3.24 2.69 37.16 0.10 3.34 16 28 F -0.18 -1.40 16.28 2.25 0.04 -1.36 16 29 F -0.18 -1.54 16.80 2.25 0.04 -1.50 16 30 F -0.18 -1.48 16.80 2.25 0.04 -1.45 16 31 C -0.13 -0.73 4.64 -26.73 -0.12 -0.85 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.40 3.08 6.73 -40.82 -0.27 2.80 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 7.60 -51.93 -0.39 0.08 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.38 7.80 -51.93 -0.41 -0.03 16 43 H 0.08 0.38 7.80 -51.93 -0.41 -0.03 16 44 H 0.09 0.45 7.80 -51.93 -0.41 0.05 16 45 H 0.08 0.52 7.80 -51.93 -0.41 0.11 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -32.56 382.18 -9.98 -42.54 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.53 Total: -0.45 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -5.69 Total: 4.79 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 0.39 Total: -64.93 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.11 Total: -4.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.56 -9.98 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.014 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds