Wall clock time and date at job start Tue Mar 31 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 N 1.40064 * 125.87463 * 90.02199 * 10 9 7 12 12 C 1.30251 * 109.69527 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.47014 * 359.97438 * 12 11 10 14 14 C 1.36314 * 125.87284 * 269.71875 * 10 9 7 15 15 N 1.33205 * 134.61802 * 0.02778 * 14 10 9 16 16 C 1.31506 * 120.68482 * 179.97438 * 15 14 10 17 17 N 1.32125 * 122.64781 * 0.02562 * 16 15 14 18 18 C 1.32875 * 121.19082 * 359.62994 * 17 16 15 19 19 N 1.38103 * 120.80930 * 179.91341 * 18 17 16 20 20 C 1.46495 * 120.00264 * 0.66569 * 19 18 17 21 21 H 1.09002 * 109.47183 * 35.00369 * 20 19 18 22 22 C 1.52998 * 109.47384 * 275.00005 * 20 19 18 23 23 C 1.53006 * 109.46964 * 299.99910 * 22 20 19 24 24 C 1.52993 * 109.47214 * 299.99747 * 23 22 20 25 25 C 1.53007 * 109.47043 * 60.00099 * 24 23 22 26 26 H 1.08996 * 109.47115 * 59.99666 * 25 24 23 27 27 C 1.53001 * 109.46807 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47461 * 59.99810 * 27 25 24 29 29 F 1.39906 * 109.46879 * 179.97438 * 27 25 24 30 30 F 1.39898 * 109.47342 * 299.99434 * 27 25 24 31 31 C 1.53002 * 109.46947 * 299.99654 * 25 24 23 32 32 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 33 33 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 34 34 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 35 35 H 1.07996 * 125.76616 * 180.02562 * 12 11 10 36 36 H 1.07999 * 118.67412 * 179.97438 * 16 15 14 37 37 H 0.97005 * 119.99934 * 180.66032 * 19 18 17 38 38 H 1.09002 * 109.46959 * 59.99454 * 22 20 19 39 39 H 1.08996 * 109.47280 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.47205 * 59.99818 * 23 22 20 41 41 H 1.08996 * 109.47102 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.47122 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47438 * 299.99962 * 24 23 22 44 44 H 1.08996 * 109.47223 * 299.99945 * 31 25 24 45 45 H 1.09000 * 109.47156 * 179.97438 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 7 2.7360 -4.2318 1.1541 12 6 3.5486 -5.1845 0.7953 13 6 3.5849 -5.2339 -0.6151 14 6 2.7179 -4.2282 -1.0855 15 7 2.5704 -4.0706 -2.3999 16 6 3.2202 -4.8403 -3.2453 17 7 4.0416 -5.7973 -2.8513 18 6 4.2606 -6.0283 -1.5612 19 7 5.1194 -7.0319 -1.1582 20 6 5.8132 -7.8477 -2.1578 21 1 6.0592 -7.2313 -3.0225 22 6 4.9064 -9.0001 -2.5942 23 6 4.5613 -9.8652 -1.3803 24 6 5.8475 -10.4299 -0.7742 25 6 6.7544 -9.2774 -0.3378 26 1 6.2382 -8.6704 0.4059 27 6 8.0410 -9.8422 0.2678 28 9 8.7033 -10.6209 -0.6873 29 9 8.8705 -8.7884 0.6663 30 9 7.7259 -10.6334 1.3776 31 6 7.0996 -8.4123 -1.5517 32 1 -0.4850 0.8401 -0.0041 33 1 0.6241 -2.5528 0.9015 34 1 0.6247 -2.5609 -0.8785 35 1 4.1006 -5.8285 1.4638 36 1 3.0761 -4.6844 -4.3042 37 1 5.2634 -7.1966 -0.2131 38 1 3.9900 -8.5978 -3.0260 39 1 5.4228 -9.6073 -3.3376 40 1 4.0450 -9.2583 -0.6365 41 1 3.9149 -10.6860 -1.6911 42 1 5.6017 -11.0458 0.0908 43 1 6.3637 -11.0368 -1.5179 44 1 7.6158 -9.0193 -2.2954 45 1 7.7453 -7.5911 -1.2407 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:24 Heat of formation + Delta-G solvation = -72.247208 kcal Electronic energy + Delta-G solvation = -33726.460509 eV Core-core repulsion = 28749.942969 eV Total energy + Delta-G solvation = -4976.517540 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.06238 -48.55421 -48.52724 -42.81192 -40.56202 -39.46105 -36.49387 -35.64747 -33.71658 -32.86481 -32.60845 -31.68786 -29.82126 -29.04806 -26.68142 -25.56410 -25.14403 -24.11089 -23.37152 -22.84977 -21.73444 -20.56995 -19.59401 -19.24024 -19.17088 -18.82642 -18.57182 -18.23271 -17.53804 -16.81750 -16.62820 -16.37430 -16.13578 -15.58981 -15.41376 -15.33487 -15.28459 -15.10455 -14.97005 -14.95194 -14.74236 -14.70108 -14.67677 -14.24035 -14.02747 -13.70540 -13.68637 -13.12908 -13.11250 -13.02677 -12.97612 -12.74193 -12.63532 -12.35743 -12.29148 -12.26475 -11.85454 -11.62296 -11.46048 -11.34380 -11.17864 -10.75770 -10.54814 -10.02710 -9.75094 -8.96874 -8.35324 -6.52469 -0.00251 0.56053 1.33051 1.37455 1.40345 1.49115 1.65258 1.80573 2.03399 2.31793 2.81742 2.94340 3.00761 3.04825 3.07376 3.30114 3.42511 3.66408 3.72604 3.74147 3.81943 3.96648 4.11123 4.11924 4.17777 4.30748 4.39541 4.44304 4.61322 4.67532 4.81999 4.86770 4.88789 5.00334 5.01594 5.09799 5.20617 5.29398 5.40654 5.44406 5.47777 5.57405 5.77523 5.78918 6.00842 6.15173 6.52870 6.59604 6.80151 7.17043 7.48788 8.72055 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002172 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.147676 B =12886.889580 C =13493.305677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.286 3.714 10 N -0.367 5.367 11 N -0.291 5.291 12 C 0.099 3.901 13 C -0.346 4.346 14 C 0.337 3.663 15 N -0.607 5.607 16 C 0.376 3.624 17 N -0.608 5.608 18 C 0.523 3.477 19 N -0.679 5.679 20 C 0.162 3.838 21 H 0.096 0.904 22 C -0.128 4.128 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.129 4.129 26 H 0.122 0.878 27 C 0.453 3.547 28 F -0.186 7.186 29 F -0.191 7.191 30 F -0.190 7.190 31 C -0.122 4.122 32 H 0.274 0.726 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.237 0.763 36 H 0.229 0.771 37 H 0.417 0.583 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.777 -25.700 -4.225 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.167 3.833 10 N -0.154 5.154 11 N -0.106 5.106 12 C -0.096 4.096 13 C -0.364 4.364 14 C 0.090 3.910 15 N -0.334 5.334 16 C 0.083 3.917 17 N -0.339 5.339 18 C 0.268 3.732 19 N -0.312 5.312 20 C 0.058 3.942 21 H 0.114 0.886 22 C -0.167 4.167 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.149 4.149 26 H 0.140 0.860 27 C 0.399 3.601 28 F -0.167 7.167 29 F -0.172 7.172 30 F -0.171 7.171 31 C -0.160 4.160 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.253 0.747 36 H 0.245 0.755 37 H 0.256 0.744 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.874 -24.723 -4.180 29.677 hybrid contribution 0.548 0.633 0.832 1.180 sum 16.422 -24.090 -3.348 29.347 Atomic orbital electron populations 1.70008 1.07391 1.28962 1.49403 1.25801 0.95906 1.02855 0.93559 0.85367 0.78342 0.77539 0.78985 1.19577 1.19367 1.19381 1.21362 0.92881 0.91205 1.53650 0.93596 1.19086 0.85958 0.80938 0.97339 1.49082 1.37393 1.28397 1.00515 1.76892 1.14179 1.10524 1.09043 1.24243 0.96541 0.96007 0.92819 1.19755 1.12538 1.07990 0.96070 1.19364 0.91981 0.90868 0.88786 1.67522 1.32292 1.33253 1.00382 1.25159 0.83716 0.82721 1.00104 1.68103 1.26203 1.25372 1.14203 1.17953 0.83830 0.83909 0.87472 1.44592 1.44335 1.32074 1.10162 1.20987 0.90360 0.91567 0.91238 0.88646 1.21941 1.00109 0.96264 0.98388 1.21417 0.96459 0.99509 0.97486 1.21613 0.95590 0.95526 1.02310 1.22541 0.91467 1.00236 1.00650 0.86038 1.20827 0.87295 0.75790 0.76159 1.93165 1.83237 1.76232 1.64074 1.93188 1.75234 1.57490 1.91332 1.93177 1.92833 1.75697 1.55403 1.21922 0.97401 0.99834 0.96796 0.91690 0.95234 0.95024 0.74667 0.75542 0.74388 0.92451 0.89066 0.92214 0.90597 0.90139 0.89649 0.87402 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 13.29 21.45 0.28 -54.42 16 2 C 0.02 1.13 5.46 84.66 0.46 1.59 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -32.96 9.39 25.60 0.24 -32.72 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.29 16.25 6.19 85.63 0.53 16.78 16 10 N -0.37 -18.23 3.63 -348.95 -1.27 -19.50 16 11 N -0.29 -12.51 12.45 -56.46 -0.70 -13.21 16 12 C 0.10 3.08 11.87 85.65 1.02 4.09 16 13 C -0.35 -11.62 6.14 -21.29 -0.13 -11.75 16 14 C 0.34 14.89 8.04 134.14 1.08 15.97 16 15 N -0.61 -25.55 10.47 -198.10 -2.07 -27.62 16 16 C 0.38 11.68 12.24 180.87 2.21 13.89 16 17 N -0.61 -16.49 9.35 -197.01 -1.84 -18.34 16 18 C 0.52 13.55 7.53 133.64 1.01 14.55 16 19 N -0.68 -10.52 4.35 -323.48 -1.41 -11.93 16 20 C 0.16 1.85 2.81 44.99 0.13 1.98 16 21 H 0.10 1.35 7.58 -2.39 -0.02 1.34 16 22 C -0.13 -1.33 5.61 30.60 0.17 -1.16 16 23 C -0.11 -0.97 5.77 30.59 0.18 -0.79 16 24 C -0.11 -0.75 4.96 30.59 0.15 -0.60 16 25 C -0.13 -0.97 1.99 -10.79 -0.02 -0.99 16 26 H 0.12 0.67 6.50 -2.39 -0.02 0.66 16 27 C 0.45 5.21 2.69 71.98 0.19 5.40 16 28 F -0.19 -2.34 16.28 44.97 0.73 -1.61 16 29 F -0.19 -2.75 16.80 44.97 0.76 -1.99 16 30 F -0.19 -2.60 16.80 44.97 0.76 -1.85 16 31 C -0.12 -0.93 4.64 30.60 0.14 -0.79 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.03 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.24 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.23 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.42 4.67 6.73 -92.70 -0.62 4.05 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.64 7.60 -2.39 -0.02 0.62 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.08 0.53 7.80 -2.39 -0.02 0.51 16 43 H 0.08 0.50 7.80 -2.39 -0.02 0.48 16 44 H 0.11 0.61 7.80 -2.39 -0.02 0.60 16 45 H 0.08 0.73 7.80 -2.39 -0.02 0.71 16 Total: -1.00 -75.89 382.18 5.05 -70.84 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.43 Total: 7.17 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 7.36 Total: 25.44 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -7.01 Total: -145.02 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 2.24 Total: -5.45 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.89 5.05 -70.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal (2) G-P(sol) polarization free energy of solvation -75.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds