Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29947 * 126.28644 * 2 1 4 4 O 1.21301 * 110.25097 * 179.72792 * 3 2 1 5 5 C 1.33642 * 109.80851 * 0.46823 * 4 3 2 6 6 C 1.50704 * 126.54941 * 179.80030 * 5 4 3 7 7 H 1.09005 * 109.49878 * 179.76475 * 6 5 4 8 8 C 1.53121 * 109.50205 * 59.69429 * 6 5 4 9 9 C 1.53120 * 109.15620 * 182.36518 * 8 6 5 10 10 C 1.53038 * 109.28163 * 57.65135 * 9 8 6 11 11 N 1.46850 * 109.52052 * 300.81966 * 10 9 8 12 12 C 1.38117 * 110.99375 * 185.83932 * 11 10 9 13 13 N 1.32854 * 120.80819 * 236.09410 * 12 11 10 14 14 C 1.32133 * 121.19355 * 179.97438 * 13 12 11 15 15 N 1.31504 * 122.64027 * 359.97438 * 14 13 12 16 16 C 1.33191 * 120.68634 * 359.97438 * 15 14 13 17 17 C 1.40804 * 120.81313 * 56.04814 * 12 11 10 18 18 C 1.41173 * 134.70530 * 0.06270 * 17 12 11 19 19 N 1.30247 * 108.47322 * 179.97438 * 18 17 12 20 20 N 1.36311 * 134.61560 * 179.97438 * 16 15 14 21 21 C 1.46501 * 125.87287 * 0.05014 * 20 16 15 22 22 C 1.50701 * 109.46977 * 89.99819 * 21 20 16 23 23 H 1.07993 * 120.00236 * 359.97438 * 22 21 20 24 24 C 1.37884 * 119.99741 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99758 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00102 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47217 * 89.99781 * 26 24 22 28 28 H 1.48499 * 109.47134 * 209.99568 * 26 24 22 29 29 H 1.48501 * 109.46930 * 329.99829 * 26 24 22 30 30 C 1.46839 * 111.19909 * 61.74219 * 11 10 9 31 31 N 1.31132 * 106.89985 * 359.54084 * 5 4 3 32 32 H 1.08998 * 109.47045 * 269.97469 * 1 2 3 33 33 H 1.09001 * 109.47121 * 29.97369 * 1 2 3 34 34 H 1.08997 * 109.47437 * 149.97033 * 1 2 3 35 35 H 1.09000 * 109.52600 * 62.45743 * 8 6 5 36 36 H 1.08999 * 109.52031 * 302.26368 * 8 6 5 37 37 H 1.09001 * 109.50190 * 297.70803 * 9 8 6 38 38 H 1.08999 * 109.53232 * 177.61218 * 9 8 6 39 39 H 1.09004 * 109.46250 * 180.80144 * 10 9 8 40 40 H 1.09004 * 109.46017 * 60.83625 * 10 9 8 41 41 H 1.07998 * 118.67467 * 180.26378 * 14 13 12 42 42 H 1.08005 * 125.76077 * 359.97438 * 18 17 12 43 43 H 1.09003 * 109.47499 * 209.99669 * 21 20 16 44 44 H 1.08999 * 109.47241 * 329.99926 * 21 20 16 45 45 H 0.97001 * 119.99798 * 180.02562 * 25 24 22 46 46 H 1.09000 * 109.46296 * 58.27147 * 30 11 10 47 47 H 1.08996 * 109.46321 * 178.23776 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0054 5 6 3.5299 -0.6211 -0.0008 6 6 4.7970 -1.4369 -0.0014 7 1 4.5467 -2.4978 -0.0030 8 6 5.6178 -1.1073 1.2485 9 6 6.9298 -1.8958 1.2103 10 6 7.6904 -1.5496 -0.0718 11 7 6.8635 -1.8840 -1.2383 12 6 7.5689 -1.7059 -2.4123 13 7 7.1074 -0.9078 -3.3690 14 6 7.7762 -0.7315 -4.4948 15 7 8.9244 -1.3246 -4.7381 16 6 9.4702 -2.1432 -3.8404 17 6 8.7950 -2.3649 -2.6241 18 6 9.5837 -3.2613 -1.8709 19 7 10.6445 -3.5609 -2.5647 20 7 10.6115 -2.8870 -3.7921 21 6 11.6281 -2.9687 -4.8439 22 6 12.6669 -1.8996 -4.6226 23 1 12.5785 -1.2264 -3.7828 24 6 13.7302 -1.7810 -5.4923 25 7 14.6365 -0.8478 -5.2995 26 14 13.8827 -2.9451 -6.9453 27 1 13.1795 -2.3671 -8.1186 28 1 15.3175 -3.1401 -7.2749 29 1 13.2724 -4.2534 -6.5975 30 6 5.6193 -1.1041 -1.2484 31 7 2.3030 -1.0841 -0.0005 32 1 -0.3633 -0.0005 1.0276 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5143 35 1 5.0527 -1.3832 2.1387 36 1 5.8351 -0.0394 1.2703 37 1 6.7131 -2.9639 1.2278 38 1 7.5378 -1.6336 2.0762 39 1 8.6184 -2.1201 -0.1088 40 1 7.9188 -0.4838 -0.0820 41 1 7.3655 -0.0702 -5.2434 42 1 9.3474 -3.6355 -0.8857 43 1 12.1037 -3.9491 -4.8142 44 1 11.1576 -2.8224 -5.8161 45 1 15.3844 -0.7641 -5.9116 46 1 5.8574 -0.0405 -1.2531 47 1 5.0431 -1.3511 -2.1400 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = 199.237439 kcal Electronic energy + Delta-G solvation = -32837.589705 eV Core-core repulsion = 28446.994114 eV Total energy + Delta-G solvation = -4390.595591 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.91569 -41.82719 -39.88708 -38.31077 -36.42293 -35.44110 -33.81994 -33.40723 -32.08619 -31.70996 -31.03712 -29.77944 -29.38268 -27.89927 -25.60468 -25.01794 -23.98715 -23.53641 -23.02974 -22.31557 -21.82230 -20.26371 -20.01980 -18.42783 -17.96256 -17.68581 -17.41100 -17.17840 -16.62074 -15.78463 -15.49346 -15.19612 -15.12436 -14.74190 -14.48229 -14.35499 -14.16804 -13.99059 -13.87254 -13.78272 -13.61476 -13.31623 -12.90022 -12.81983 -12.68091 -12.51103 -12.14852 -12.02405 -11.73110 -11.52955 -11.37820 -11.29509 -11.28377 -11.14101 -11.04595 -10.88810 -10.74119 -10.37614 -10.25093 -10.16578 -9.74808 -9.44046 -8.95782 -8.78572 -8.49130 -8.00292 -6.27376 -4.30603 0.79666 0.89453 1.61899 1.86660 2.39753 2.71585 2.81507 3.06789 3.17457 3.23045 3.25332 3.37437 3.69029 4.06344 4.20374 4.21664 4.23115 4.28967 4.40305 4.50934 4.62087 4.74237 4.76722 4.87613 4.93425 4.95929 5.02222 5.03159 5.08038 5.17565 5.21428 5.28283 5.33812 5.38776 5.46827 5.51086 5.55217 5.61329 5.67169 5.68552 5.84856 6.11653 6.27996 6.39077 6.43788 6.75266 6.90340 7.10813 7.24925 7.52020 7.83789 7.95378 8.24080 8.51147 8.73527 9.27064 10.85155 Molecular weight = 369.17amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.001994 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.382238 B =14035.432503 C =14634.127452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.081 5.919 5 C 0.196 3.804 6 C 0.005 3.995 7 H 0.127 0.873 8 C -0.121 4.121 9 C -0.114 4.114 10 C 0.049 3.951 11 N -0.466 5.466 12 C 0.434 3.566 13 N -0.596 5.596 14 C 0.354 3.646 15 N -0.533 5.533 16 C 0.355 3.645 17 C -0.293 4.293 18 C 0.073 3.927 19 N -0.231 5.231 20 N -0.331 5.331 21 C 0.236 3.764 22 C -0.540 4.540 23 H 0.078 0.922 24 C 0.081 3.919 25 N -0.886 5.886 26 Si 0.874 3.126 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.264 1.264 30 C 0.071 3.929 31 N -0.480 5.480 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.198 0.802 42 H 0.192 0.808 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.269 0.731 46 H 0.066 0.934 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.347 -1.186 13.879 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.094 5.094 4 O 0.023 5.977 5 C -0.025 4.025 6 C -0.016 4.016 7 H 0.145 0.855 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.076 4.076 11 N -0.183 5.183 12 C 0.184 3.816 13 N -0.321 5.321 14 C 0.060 3.940 15 N -0.255 5.255 16 C 0.107 3.893 17 C -0.310 4.310 18 C -0.122 4.122 19 N -0.046 5.046 20 N -0.117 5.117 21 C 0.118 3.882 22 C -0.578 4.578 23 H 0.096 0.904 24 C -0.124 4.124 25 N -0.523 5.523 26 Si 0.700 3.300 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.188 1.188 30 C -0.056 4.056 31 N -0.213 5.213 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.215 0.785 42 H 0.208 0.792 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.939 -1.251 12.984 27.262 hybrid contribution 0.126 0.169 -0.398 0.450 sum -23.814 -1.083 12.586 26.957 Atomic orbital electron populations 1.20142 0.82907 1.04765 1.04275 1.25930 1.00644 0.83528 1.00598 1.74667 0.89389 1.23921 1.21414 1.85297 1.22296 1.24709 1.65398 1.28591 0.96548 0.82100 0.95251 1.19985 0.85488 0.98741 0.97391 0.85485 1.21759 0.96332 1.01754 0.96061 1.21618 0.95270 1.01569 0.96704 1.22506 0.96430 1.01122 0.87553 1.58467 1.05629 1.53179 1.01019 1.19278 0.86126 0.86129 0.90072 1.68334 1.37581 1.21263 1.04927 1.24535 0.85259 0.92667 0.91555 1.67519 1.13234 1.11591 1.33188 1.18987 0.88579 0.91563 0.90186 1.19614 1.00458 1.10714 1.00178 1.23602 0.91288 0.97185 1.00128 1.76994 1.19764 1.15616 0.92215 1.49021 1.15645 1.33168 1.13829 1.20131 0.85430 0.99822 0.82852 1.21076 1.06711 1.15753 1.14283 0.90384 1.24768 0.94930 0.95269 0.97417 1.69865 1.12487 1.32323 1.37598 0.86878 0.78229 0.81665 0.83211 1.19492 1.20462 1.18840 1.21986 0.89448 0.97176 0.97031 1.71924 0.99596 1.29396 1.20432 0.89338 0.89464 0.88968 0.90398 0.90571 0.89883 0.89536 0.88389 0.92597 0.78519 0.79154 0.92865 0.93049 0.92080 0.91546 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.01 16 2 C 0.17 1.64 8.22 -156.37 -1.28 0.36 16 3 N -0.39 -4.34 12.16 30.90 0.38 -3.96 16 4 O 0.08 0.86 11.31 18.10 0.20 1.06 16 5 C 0.20 1.84 7.03 -13.06 -0.09 1.74 16 6 C 0.00 0.03 2.82 -91.69 -0.26 -0.22 16 7 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 8 C -0.12 -0.68 5.27 -26.61 -0.14 -0.82 16 9 C -0.11 -0.61 6.09 -26.65 -0.16 -0.77 16 10 C 0.05 0.41 5.23 -3.83 -0.02 0.39 16 11 N -0.47 -4.89 4.68 -172.85 -0.81 -5.70 16 12 C 0.43 6.23 6.42 -154.85 -0.99 5.23 16 13 N -0.60 -8.83 8.85 -13.62 -0.12 -8.95 16 14 C 0.35 5.56 12.24 -92.11 -1.13 4.43 16 15 N -0.53 -10.56 10.47 -13.97 -0.15 -10.71 16 16 C 0.36 7.35 8.04 -156.24 -1.26 6.09 16 17 C -0.29 -4.95 5.73 -106.82 -0.61 -5.56 16 18 C 0.07 1.15 10.70 -17.11 -0.18 0.96 16 19 N -0.23 -4.59 12.45 30.80 0.38 -4.21 16 20 N -0.33 -7.41 3.63 -61.64 -0.22 -7.63 16 21 C 0.24 5.73 5.26 -5.19 -0.03 5.71 16 22 C -0.54 -15.26 9.94 -34.44 -0.34 -15.60 16 23 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 24 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 25 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 26 Si 0.87 20.45 27.47 -169.99 -4.67 15.78 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 30 C 0.07 0.67 3.93 -3.84 -0.02 0.65 16 31 N -0.48 -5.02 11.55 -9.87 -0.11 -5.13 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.85 5.01 -51.93 -0.26 0.59 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.20 2.32 8.06 -52.49 -0.42 1.89 16 42 H 0.19 2.03 6.90 -52.48 -0.36 1.67 16 43 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 44 H 0.05 1.23 7.57 -51.93 -0.39 0.84 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 47 H 0.10 1.05 7.74 -51.93 -0.40 0.64 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.75 390.42 -10.73 -45.47 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.03 Total: -1.01 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -6.24 Total: 4.78 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: 0.12 Total: -71.98 kcal Atomic # 8 Polarization: 0.86 SS G_CDS: 0.20 Total: 1.06 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.75 -10.73 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.709 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds