Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29948 * 126.28617 * 2 1 4 4 O 1.21306 * 110.24847 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81221 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.55097 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.53559 * 180.12105 * 6 5 4 8 8 C 1.53127 * 109.50008 * 300.21355 * 6 5 4 9 9 C 1.53119 * 109.16282 * 177.59624 * 8 6 5 10 10 C 1.53040 * 109.27639 * 302.35048 * 9 8 6 11 11 N 1.46844 * 109.52756 * 59.17775 * 10 9 8 12 12 C 1.38107 * 111.00401 * 174.15946 * 11 10 9 13 13 N 1.32858 * 120.81448 * 124.18575 * 12 11 10 14 14 C 1.32123 * 121.19451 * 180.02562 * 13 12 11 15 15 N 1.31510 * 122.64648 * 0.02562 * 14 13 12 16 16 C 1.33199 * 120.68256 * 0.02562 * 15 14 13 17 17 C 1.40818 * 120.81214 * 304.21092 * 12 11 10 18 18 C 1.41168 * 134.69640 * 0.03213 * 17 12 11 19 19 N 1.30249 * 108.46928 * 180.20253 * 18 17 12 20 20 N 1.36308 * 134.61923 * 179.97438 * 16 15 14 21 21 C 1.46510 * 125.87260 * 0.07553 * 20 16 15 22 22 C 1.50695 * 109.46809 * 90.00139 * 21 20 16 23 23 H 1.07999 * 120.00635 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99588 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99924 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47128 * 59.99465 * 26 24 22 28 28 H 1.48495 * 109.47062 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46817 * 299.99843 * 26 24 22 30 30 C 1.46850 * 111.19706 * 298.26018 * 11 10 9 31 31 N 1.31132 * 106.89765 * 0.22150 * 5 4 3 32 32 H 1.09008 * 109.47317 * 89.97311 * 1 2 3 33 33 H 1.08995 * 109.47280 * 209.97370 * 1 2 3 34 34 H 1.09006 * 109.47240 * 329.97484 * 1 2 3 35 35 H 1.08998 * 109.52283 * 297.50441 * 8 6 5 36 36 H 1.08999 * 109.52287 * 57.63049 * 8 6 5 37 37 H 1.08994 * 109.50248 * 62.28430 * 9 8 6 38 38 H 1.08995 * 109.50630 * 182.40506 * 9 8 6 39 39 H 1.09004 * 109.46291 * 299.15871 * 10 9 8 40 40 H 1.09007 * 109.46095 * 179.19625 * 10 9 8 41 41 H 1.08001 * 118.67951 * 180.02562 * 14 13 12 42 42 H 1.08002 * 125.76328 * 359.93061 * 18 17 12 43 43 H 1.08997 * 109.46820 * 210.00471 * 21 20 16 44 44 H 1.08996 * 109.46904 * 330.00105 * 21 20 16 45 45 H 0.97001 * 119.99480 * 180.02562 * 25 24 22 46 46 H 1.08998 * 109.46476 * 181.76054 * 30 11 10 47 47 H 1.09004 * 109.45585 * 301.72388 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 1 4.5472 -2.4980 -0.0056 8 6 5.6190 -1.1021 -1.2506 9 6 6.9315 -1.8900 -1.2140 10 6 7.6903 -1.5482 0.0703 11 7 6.8624 -1.8875 1.2346 12 6 7.5662 -1.7135 2.4101 13 7 7.1005 -0.9237 3.3716 14 6 7.7678 -0.7514 4.4989 15 7 8.9187 -1.3406 4.7391 16 6 9.4689 -2.1510 3.8365 17 6 8.7952 -2.3684 2.6187 18 6 9.5890 -3.2554 1.8597 19 7 10.6484 -3.5583 2.5542 20 7 10.6141 -2.8884 3.7838 21 6 11.6299 -2.9730 4.8361 22 6 11.2929 -4.1072 5.7694 23 1 10.4107 -4.7055 5.5958 24 6 12.1110 -4.3812 6.8449 25 7 13.1856 -3.6530 7.0560 26 14 11.6938 -5.7876 8.0014 27 1 11.6632 -7.0622 7.2400 28 1 12.7233 -5.8733 9.0681 29 1 10.3633 -5.5456 8.6151 30 6 5.6176 -1.1084 1.2462 31 7 2.3030 -1.0841 -0.0063 32 1 -0.3634 0.0005 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3634 0.8898 0.5142 35 1 5.0550 -1.3750 -2.1425 36 1 5.8348 -0.0339 -1.2687 37 1 6.7154 -2.9581 -1.2357 38 1 7.5400 -1.6236 -2.0781 39 1 7.9181 -0.4824 0.0848 40 1 8.6187 -2.1184 0.1062 41 1 7.3514 -0.1005 5.2534 42 1 9.3549 -3.6242 0.8720 43 1 12.6061 -3.1512 4.3853 44 1 11.6531 -2.0374 5.3948 45 1 13.7614 -3.8461 7.8124 46 1 5.0405 -1.3590 2.1363 47 1 5.8552 -0.0446 1.2552 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = 193.819114 kcal Electronic energy + Delta-G solvation = -32792.472751 eV Core-core repulsion = 28401.642204 eV Total energy + Delta-G solvation = -4390.830547 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.90928 -41.76085 -39.85133 -38.24925 -36.41568 -35.41399 -33.80049 -33.40428 -32.00558 -31.61807 -30.95755 -29.72230 -29.36941 -27.34760 -25.58513 -24.99339 -23.97928 -23.51578 -23.28302 -22.29846 -21.80331 -20.27417 -20.02313 -18.42110 -17.94917 -17.64722 -17.38210 -16.74832 -16.53122 -15.76882 -15.46033 -15.15062 -15.08769 -14.66815 -14.53079 -14.37164 -14.27423 -13.98068 -13.86342 -13.65809 -13.38249 -13.31141 -13.03900 -12.80014 -12.67595 -12.22087 -12.01744 -11.76207 -11.72404 -11.48626 -11.35155 -11.24365 -11.23009 -11.07594 -11.03912 -10.84573 -10.78990 -10.31906 -10.25707 -10.16123 -9.86802 -9.39388 -8.88997 -8.63355 -8.43361 -7.95029 -6.25859 -4.32773 0.80149 0.95350 1.68241 1.87470 2.40383 2.82636 2.92253 3.07837 3.24432 3.27621 3.32327 3.38932 3.69739 4.09754 4.21934 4.24154 4.29533 4.31810 4.41143 4.59008 4.63916 4.75279 4.82483 4.88970 4.96717 4.98897 5.03066 5.07855 5.09793 5.18256 5.24193 5.27471 5.34965 5.43595 5.48422 5.51862 5.56705 5.62513 5.68053 5.70541 5.84825 6.18327 6.31567 6.53908 6.94249 6.96162 7.02330 7.21445 7.58432 7.74757 7.84277 7.85553 8.07885 8.56246 8.70458 9.32589 10.82290 Molecular weight = 369.17amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.002009 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.103803 B =13931.460559 C =14632.274743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.081 5.919 5 C 0.197 3.803 6 C 0.004 3.996 7 H 0.128 0.872 8 C -0.120 4.120 9 C -0.114 4.114 10 C 0.050 3.950 11 N -0.466 5.466 12 C 0.432 3.568 13 N -0.598 5.598 14 C 0.351 3.649 15 N -0.531 5.531 16 C 0.352 3.648 17 C -0.295 4.295 18 C 0.068 3.932 19 N -0.233 5.233 20 N -0.330 5.330 21 C 0.263 3.737 22 C -0.536 4.536 23 H 0.061 0.939 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 C 0.072 3.928 31 N -0.479 5.479 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.197 0.803 42 H 0.190 0.810 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.269 0.731 46 H 0.098 0.902 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.233 7.543 -18.853 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.095 5.095 4 O 0.022 5.978 5 C -0.025 4.025 6 C -0.017 4.017 7 H 0.145 0.855 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.075 4.075 11 N -0.183 5.183 12 C 0.182 3.818 13 N -0.323 5.323 14 C 0.057 3.943 15 N -0.253 5.253 16 C 0.103 3.897 17 C -0.311 4.311 18 C -0.127 4.127 19 N -0.049 5.049 20 N -0.117 5.117 21 C 0.146 3.854 22 C -0.575 4.575 23 H 0.079 0.921 24 C -0.136 4.136 25 N -0.528 5.528 26 Si 0.734 3.266 27 H -0.200 1.200 28 H -0.209 1.209 29 H -0.199 1.199 30 C -0.056 4.056 31 N -0.213 5.213 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.214 0.786 42 H 0.206 0.794 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.827 7.423 -17.915 27.028 hybrid contribution -0.359 -0.252 0.387 0.585 sum -19.186 7.172 -17.527 26.958 Atomic orbital electron populations 1.20145 0.82906 1.04784 1.04267 1.25931 1.00648 0.83523 1.00553 1.74663 0.89389 1.23919 1.21483 1.85291 1.22303 1.24721 1.65448 1.28589 0.96556 0.82080 0.95231 1.19991 0.85490 0.98796 0.97381 0.85455 1.21753 0.96336 1.01650 0.96113 1.21619 0.95273 1.01661 0.96650 1.22492 0.96494 1.00872 0.87682 1.58454 1.05583 1.53195 1.01038 1.19274 0.86149 0.86337 0.90002 1.68312 1.37577 1.21584 1.04796 1.24517 0.85599 0.92668 0.91555 1.67533 1.13438 1.12003 1.32296 1.19031 0.88854 0.92038 0.89793 1.19640 1.00226 1.11070 1.00199 1.23571 0.91819 0.97239 1.00036 1.76989 1.21000 1.14423 0.92440 1.49546 1.16384 1.32253 1.13493 1.19837 0.84415 0.99541 0.81561 1.21194 1.10759 1.15193 1.10315 0.92058 1.24898 0.94541 0.96908 0.97275 1.69906 1.13752 1.39213 1.29934 0.86394 0.78288 0.81900 0.79980 1.19957 1.20861 1.19950 1.21983 0.89511 0.97089 0.97017 1.71930 0.99607 1.29385 1.20387 0.89345 0.88944 0.89464 0.90428 0.90627 0.89844 0.89604 0.92762 0.88404 0.78633 0.79366 0.92639 0.92202 0.92153 0.88330 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.00 0.38 0.00 16 2 C 0.17 1.67 8.22 -156.37 -1.28 0.38 16 3 N -0.39 -4.35 12.16 30.90 0.38 -3.97 16 4 O 0.08 0.85 11.31 18.10 0.20 1.05 16 5 C 0.20 1.86 7.03 -13.06 -0.09 1.77 16 6 C 0.00 0.03 2.82 -91.69 -0.26 -0.23 16 7 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 8 C -0.12 -0.67 5.27 -26.60 -0.14 -0.81 16 9 C -0.11 -0.59 6.09 -26.65 -0.16 -0.76 16 10 C 0.05 0.41 5.23 -3.83 -0.02 0.38 16 11 N -0.47 -5.00 4.68 -172.84 -0.81 -5.80 16 12 C 0.43 6.33 6.43 -154.85 -1.00 5.33 16 13 N -0.60 -9.02 8.85 -13.62 -0.12 -9.14 16 14 C 0.35 5.63 12.24 -92.11 -1.13 4.50 16 15 N -0.53 -10.76 10.47 -13.97 -0.15 -10.90 16 16 C 0.35 7.43 8.04 -156.24 -1.26 6.17 16 17 C -0.29 -5.07 5.73 -106.82 -0.61 -5.69 16 18 C 0.07 1.09 10.69 -17.11 -0.18 0.91 16 19 N -0.23 -4.74 12.45 30.80 0.38 -4.36 16 20 N -0.33 -7.60 3.63 -61.64 -0.22 -7.83 16 21 C 0.26 6.83 6.19 -5.19 -0.03 6.80 16 22 C -0.54 -15.03 9.39 -34.44 -0.32 -15.36 16 23 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 24 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 26 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 29 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 30 C 0.07 0.69 3.93 -3.84 -0.02 0.67 16 31 N -0.48 -5.12 11.55 -9.87 -0.11 -5.23 16 32 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.81 4.97 -51.92 -0.26 0.55 16 41 H 0.20 2.38 8.06 -52.49 -0.42 1.95 16 42 H 0.19 2.08 6.88 -52.49 -0.36 1.72 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 45 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 46 H 0.10 1.10 7.73 -51.93 -0.40 0.69 16 47 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -33.67 393.96 -11.08 -44.75 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.06 Total: -2.18 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -6.22 Total: 5.86 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: 0.08 Total: -71.87 kcal Atomic # 8 Polarization: 0.85 SS G_CDS: 0.20 Total: 1.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.67 -11.08 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.571 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds