Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 117.00256 * 2 1 4 4 C 1.38562 * 120.06884 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99730 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.14933 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.93102 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47244 * 89.99838 * 7 6 5 9 9 C 1.46896 * 111.00148 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.82657 * 328.70253 * 9 8 7 11 11 C 1.54707 * 110.96695 * 92.42666 * 9 8 7 12 12 O 1.43779 * 102.77725 * 92.95056 * 11 9 8 13 13 C 1.36136 * 109.20388 * 27.89168 * 12 11 9 14 14 C 1.39285 * 129.90168 * 161.19788 * 13 12 11 15 15 C 1.37934 * 120.23813 * 179.03214 * 14 13 12 16 16 C 1.38286 * 120.35096 * 0.29847 * 15 14 13 17 17 C 1.38344 * 119.76916 * 359.63649 * 16 15 14 18 18 C 1.37743 * 119.97801 * 0.52682 * 17 16 15 19 19 C 1.38241 * 120.14367 * 0.23350 * 6 5 4 20 20 C 1.38568 * 119.99710 * 359.49265 * 19 6 5 21 21 O 1.36000 * 120.07028 * 180.25391 * 20 19 6 22 22 C 1.42898 * 117.00217 * 0.27303 * 21 20 19 23 23 C 1.52994 * 109.47229 * 180.02562 * 22 21 20 24 24 C 1.50694 * 109.47404 * 180.02562 * 23 22 21 25 25 H 1.08006 * 120.00131 * 359.97438 * 24 23 22 26 26 C 1.37877 * 120.00370 * 179.97438 * 24 23 22 27 27 N 1.31515 * 119.99860 * 0.02562 * 26 24 23 28 28 Si 1.86805 * 120.00161 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47152 * 60.00081 * 28 26 24 30 30 H 1.48493 * 109.47316 * 180.02562 * 28 26 24 31 31 H 1.48502 * 109.47252 * 300.00408 * 28 26 24 32 32 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46858 * 299.99985 * 1 2 3 34 34 H 1.08994 * 109.47683 * 59.99444 * 1 2 3 35 35 H 1.08004 * 120.00542 * 0.02562 * 4 3 2 36 36 H 1.08003 * 119.92421 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46810 * 330.00141 * 7 6 5 38 38 H 1.08998 * 109.47358 * 210.00220 * 7 6 5 39 39 H 1.00901 * 111.00092 * 56.04575 * 8 7 6 40 40 H 1.09007 * 110.75121 * 211.27343 * 11 9 8 41 41 H 1.08997 * 110.74976 * 334.44223 * 11 9 8 42 42 H 1.07999 * 119.87688 * 359.05647 * 14 13 12 43 43 H 1.08002 * 119.82037 * 180.02562 * 15 14 13 44 44 H 1.07999 * 120.11654 * 179.90616 * 16 15 14 45 45 H 1.08006 * 120.01499 * 180.27204 * 17 16 15 46 46 H 1.08004 * 120.00030 * 179.74336 * 19 6 5 47 47 H 1.08995 * 109.47084 * 300.00096 * 22 21 20 48 48 H 1.09000 * 109.47288 * 59.99936 * 22 21 20 49 49 H 1.09004 * 109.47270 * 300.00284 * 23 22 21 50 50 H 1.09002 * 109.47505 * 60.00054 * 23 22 21 51 51 H 0.97002 * 119.99893 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3029 3.6799 -0.0016 7 6 3.9837 5.0243 -0.0028 8 7 4.2054 5.4622 1.3818 9 6 4.8682 6.7725 1.4199 10 1 5.5254 6.8995 0.5596 11 6 3.8293 7.9164 1.4955 12 8 3.7059 8.1408 2.9103 13 6 4.8717 7.7944 3.5220 14 6 5.3602 8.1452 4.7784 15 6 6.5754 7.6578 5.2121 16 6 7.3224 6.8221 4.4022 17 6 6.8438 6.4678 3.1535 18 6 5.6320 6.9560 2.7169 19 6 4.0603 2.5234 -0.0065 20 6 3.4359 1.2863 -0.0002 21 8 4.1795 0.1477 0.0002 22 6 5.6003 0.3006 0.0001 23 6 6.2618 -1.0789 0.0000 24 6 7.7600 -0.9177 0.0004 25 1 8.1969 0.0701 0.0004 26 6 8.5733 -2.0310 0.0010 27 7 8.0415 -3.2338 0.0006 28 14 10.4306 -1.8310 0.0009 29 1 10.8479 -1.0815 1.2130 30 1 11.0727 -3.1700 0.0009 31 1 10.8479 -1.0825 -1.2120 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 -0.3634 0.5139 -0.8898 35 1 0.2146 2.3197 -0.0005 36 1 1.3342 4.5115 -0.0011 37 1 3.3536 5.7501 -0.5169 38 1 4.9416 4.9461 -0.5169 39 1 4.7330 4.7745 1.8984 40 1 4.2013 8.8098 0.9937 41 1 2.8775 7.6026 1.0669 42 1 4.7850 8.8009 5.4153 43 1 6.9475 7.9339 6.1877 44 1 8.2742 6.4439 4.7451 45 1 7.4219 5.8118 2.5195 46 1 5.1386 2.5840 -0.0111 47 1 5.9065 0.8500 -0.8901 48 1 5.9066 0.8508 0.8898 49 1 5.9556 -1.6288 0.8900 50 1 5.9555 -1.6287 -0.8900 51 1 8.6136 -4.0171 0.0005 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105468236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = -51.485480 kcal Electronic energy + Delta-G solvation = -32274.608616 eV Core-core repulsion = 27912.095705 eV Total energy + Delta-G solvation = -4362.512911 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42808 -40.33496 -38.17711 -37.70995 -37.38328 -35.61155 -33.37750 -32.15197 -30.69729 -30.44865 -30.01961 -29.35414 -28.56132 -27.28509 -25.24936 -24.75169 -23.32912 -22.43031 -22.37076 -21.40633 -21.19933 -20.48756 -18.30102 -17.63452 -17.18026 -16.93876 -16.78882 -16.34536 -15.99831 -15.85601 -15.79800 -15.07382 -14.99524 -14.75024 -14.60905 -14.50356 -14.30261 -14.22734 -13.92509 -13.67294 -13.22396 -12.92123 -12.78777 -12.64707 -12.51828 -12.31360 -12.05757 -11.91971 -11.82584 -11.53553 -11.49206 -11.24568 -11.07758 -11.02360 -10.92503 -10.81725 -10.80013 -10.55668 -9.83637 -9.65643 -9.34853 -9.30491 -8.78021 -8.52724 -8.43995 -8.42235 -7.50430 -6.09402 -4.14331 0.96201 1.13594 1.37934 1.59025 3.02770 3.27892 3.32422 3.33921 3.36933 3.41708 3.72870 3.80426 3.98599 4.11416 4.39288 4.40561 4.56502 4.73471 4.78808 4.80650 4.90519 4.97066 5.01912 5.13362 5.17258 5.18013 5.20664 5.24581 5.26676 5.28778 5.34574 5.39393 5.49151 5.54080 5.58793 5.72029 5.81262 6.02587 6.03515 6.04616 6.13499 6.22061 6.26616 6.32957 6.33378 6.57512 6.64538 6.69930 6.83323 6.93433 7.04226 7.32545 7.56211 7.66832 7.84042 8.10718 8.24794 8.91046 9.49654 11.02134 Molecular weight = 369.18amu Principal moments of inertia in cm(-1) A = 0.005880 B = 0.002667 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4760.369905 B =10494.207005 C =14458.853504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.092 3.908 4 C -0.176 4.176 5 C -0.106 4.106 6 C -0.085 4.085 7 C 0.102 3.898 8 N -0.669 5.669 9 C 0.098 3.902 10 H 0.075 0.925 11 C 0.061 3.939 12 O -0.297 6.297 13 C 0.123 3.877 14 C -0.146 4.146 15 C -0.079 4.079 16 C -0.152 4.152 17 C -0.061 4.061 18 C -0.185 4.185 19 C -0.171 4.171 20 C 0.120 3.880 21 O -0.304 6.304 22 C 0.065 3.935 23 C 0.027 3.973 24 C -0.527 4.527 25 H 0.057 0.943 26 C 0.061 3.939 27 N -0.889 5.889 28 Si 0.898 3.102 29 H -0.275 1.275 30 H -0.285 1.285 31 H -0.276 1.276 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.353 0.647 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.048 0.952 48 H 0.048 0.952 49 H 0.028 0.972 50 H 0.028 0.972 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 23.573 3.741 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.046 3.954 4 C -0.195 4.195 5 C -0.125 4.125 6 C -0.086 4.086 7 C -0.026 4.026 8 N -0.301 5.301 9 C -0.012 4.012 10 H 0.093 0.907 11 C -0.015 4.015 12 O -0.211 6.211 13 C 0.077 3.923 14 C -0.165 4.165 15 C -0.097 4.097 16 C -0.170 4.170 17 C -0.079 4.079 18 C -0.187 4.187 19 C -0.191 4.191 20 C 0.072 3.928 21 O -0.217 6.217 22 C -0.009 4.009 23 C -0.011 4.011 24 C -0.565 4.565 25 H 0.075 0.925 26 C -0.141 4.141 27 N -0.527 5.527 28 Si 0.725 3.275 29 H -0.201 1.201 30 H -0.211 1.211 31 H -0.201 1.201 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.173 0.827 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.151 0.849 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.833 23.314 3.873 26.430 hybrid contribution 1.879 -0.071 -0.392 1.920 sum -9.955 23.243 3.481 25.523 Atomic orbital electron populations 1.23019 0.79192 1.03751 1.00785 1.86244 1.20452 1.25962 1.88934 1.18358 0.89445 0.85113 1.02442 1.20961 0.99555 0.91556 1.07391 1.20531 0.93537 0.96670 1.01772 1.19262 0.93468 0.93379 1.02511 1.20904 0.98892 0.93585 0.89180 1.60661 1.52606 1.03277 1.13572 1.21659 0.92910 0.91536 0.95080 0.90745 1.23889 1.01330 0.96476 0.79771 1.86843 1.31129 1.82503 1.20599 1.19553 0.85535 0.93288 0.93941 1.20271 0.97269 1.04265 0.94651 1.20915 0.93301 0.96034 0.99453 1.21058 1.01013 1.00608 0.94321 1.20398 0.93710 0.97771 0.96040 1.20744 0.97410 1.02669 0.97836 1.21016 1.00439 0.90752 1.06873 1.18394 0.88513 0.87009 0.98841 1.86290 1.20895 1.27254 1.87285 1.23313 0.75006 1.03238 0.99312 1.19099 0.94097 0.88927 0.98938 1.20923 0.90353 0.92826 1.52416 0.92511 1.24986 0.99080 0.95131 0.94936 1.69970 1.35543 0.97612 1.49542 0.86562 0.84881 0.77338 0.78672 1.20098 1.21097 1.20123 0.88404 0.93002 0.93028 0.85195 0.86006 0.90114 0.93953 0.82686 0.90433 0.86996 0.85493 0.85139 0.85310 0.85728 0.84851 0.93353 0.93340 0.95366 0.95382 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.00 10.28 -34.23 -0.35 -5.35 16 3 C 0.09 1.51 6.70 -39.12 -0.26 1.24 16 4 C -0.18 -2.27 9.04 -39.46 -0.36 -2.62 16 5 C -0.11 -1.28 9.69 -39.57 -0.38 -1.66 16 6 C -0.09 -1.08 5.39 -104.62 -0.56 -1.64 16 7 C 0.10 1.01 5.67 -4.98 -0.03 0.99 16 8 N -0.67 -6.93 6.36 -107.77 -0.69 -7.61 16 9 C 0.10 0.89 3.46 -67.50 -0.23 0.66 16 10 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 11 C 0.06 0.52 7.73 38.06 0.29 0.81 16 12 O -0.30 -3.37 11.11 -20.17 -0.22 -3.60 16 13 C 0.12 1.36 7.03 -38.95 -0.27 1.09 16 14 C -0.15 -1.40 10.06 -39.30 -0.40 -1.80 16 15 C -0.08 -0.66 10.02 -39.67 -0.40 -1.06 16 16 C -0.15 -1.34 10.07 -39.52 -0.40 -1.74 16 17 C -0.06 -0.59 10.03 -39.72 -0.40 -0.99 16 18 C -0.19 -1.92 5.63 -104.10 -0.59 -2.51 16 19 C -0.17 -2.62 8.69 -39.46 -0.34 -2.97 16 20 C 0.12 2.17 6.70 -39.12 -0.26 1.91 16 21 O -0.30 -6.59 9.92 -34.24 -0.34 -6.93 16 22 C 0.07 1.42 4.68 37.15 0.17 1.60 16 23 C 0.03 0.71 5.34 -27.89 -0.15 0.56 16 24 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 25 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 26 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 27 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 28 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.47 7.66 -51.92 -0.40 0.07 16 34 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 35 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 39 H 0.35 4.05 8.41 -39.29 -0.33 3.72 16 40 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.13 1.98 6.30 -52.48 -0.33 1.65 16 47 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 48 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 49 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 424.73 15.07 6.40 6.40 Total: -1.00 -33.35 424.73 -11.06 -44.41 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.59 Total: 2.60 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -3.98 Total: -20.25 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.05 Total: -33.51 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.92 Total: -15.87 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.35 -11.06 -44.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105468236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.073 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds