Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99912 * 2 1 4 4 H 1.48496 * 109.46946 * 240.00159 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46687 * 120.00541 * 3 2 1 7 7 C 1.37879 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99801 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47152 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00051 * 84.09533 * 10 9 7 12 12 C 1.53003 * 109.46693 * 269.99842 * 11 10 9 13 13 N 1.46902 * 109.46573 * 180.02562 * 12 11 10 14 14 C 1.47014 * 111.00179 * 293.62937 * 13 12 11 15 15 C 1.53101 * 109.25909 * 177.60895 * 14 13 12 16 16 O 1.43015 * 109.25546 * 56.85600 * 15 14 13 17 17 C 1.43015 * 113.73791 * 301.32434 * 16 15 14 18 18 C 1.47019 * 110.99640 * 170.00050 * 13 12 11 19 19 C 1.34776 * 120.00297 * 264.09324 * 10 9 7 20 20 O 1.21556 * 120.00376 * 175.13735 * 19 10 9 21 21 C 1.47796 * 119.99734 * 355.13827 * 19 10 9 22 22 C 1.39628 * 120.11757 * 49.76002 * 21 19 10 23 23 C 1.37899 * 119.91548 * 179.97438 * 22 21 19 24 24 C 1.38477 * 120.15722 * 0.02562 * 23 22 21 25 25 Cl 1.73606 * 119.87667 * 179.97438 * 24 23 22 26 26 C 1.38694 * 120.24669 * 359.97438 * 24 23 22 27 27 F 1.35104 * 119.96277 * 179.97438 * 26 24 23 28 28 C 1.38142 * 120.08038 * 359.70441 * 26 24 23 29 29 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47328 * 59.99343 * 9 7 2 31 31 H 1.09007 * 109.46820 * 299.99543 * 9 7 2 32 32 H 1.08999 * 109.47318 * 29.99475 * 11 10 9 33 33 H 1.09006 * 109.47028 * 150.00223 * 11 10 9 34 34 H 1.08999 * 109.47359 * 299.99530 * 12 11 10 35 35 H 1.08992 * 109.47120 * 60.00210 * 12 11 10 36 36 H 1.08999 * 109.50792 * 297.55055 * 14 13 12 37 37 H 1.09010 * 109.50283 * 57.67534 * 14 13 12 38 38 H 1.08999 * 109.50782 * 296.91632 * 15 14 13 39 39 H 1.09002 * 109.53674 * 176.81252 * 15 14 13 40 40 H 1.08996 * 109.50692 * 298.74016 * 17 16 15 41 41 H 1.09000 * 109.54158 * 178.62896 * 17 16 15 42 42 H 1.08997 * 109.50975 * 302.32559 * 18 13 12 43 43 H 1.09004 * 109.50415 * 62.41423 * 18 13 12 44 44 H 1.08003 * 120.04161 * 0.02562 * 22 21 19 45 45 H 1.07997 * 119.91673 * 179.97438 * 23 22 21 46 46 H 1.07995 * 120.07832 * 180.27474 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0027 11 6 2.7783 -4.0857 1.2589 12 6 4.0691 -3.3178 1.5504 13 7 4.6462 -3.7926 2.8151 14 6 3.7789 -3.4497 3.9516 15 6 4.3866 -4.0136 5.2388 16 8 5.7133 -3.5034 5.3970 17 6 6.5853 -3.8194 4.3084 18 6 5.9998 -3.2536 3.0117 19 6 2.5497 -4.2019 -1.1642 20 8 3.4048 -5.0657 -1.1760 21 6 1.8901 -3.7977 -2.4235 22 6 1.7922 -2.4462 -2.7608 23 6 1.1764 -2.0738 -3.9371 24 6 0.6545 -3.0368 -4.7843 25 17 -0.1198 -2.5597 -6.2630 26 6 0.7480 -4.3811 -4.4559 27 9 0.2364 -5.3158 -5.2864 28 6 1.3687 -4.7657 -3.2832 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.0664 -3.9200 2.0676 33 1 2.9985 -5.1504 1.1811 34 1 4.7810 -3.4835 0.7418 35 1 3.8489 -2.2532 1.6282 36 1 3.6964 -2.3659 4.0324 37 1 2.7894 -3.8802 3.7972 38 1 4.4196 -5.1015 5.1795 39 1 3.7772 -3.7139 6.0914 40 1 6.6822 -4.9017 4.2221 41 1 7.5662 -3.3792 4.4873 42 1 6.6317 -3.5409 2.1713 43 1 5.9528 -2.1665 3.0768 44 1 2.1990 -1.6936 -2.1015 45 1 1.1003 -1.0285 -4.1977 46 1 1.4455 -5.8127 -3.0297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131601477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = -93.140546 kcal Electronic energy + Delta-G solvation = -31862.816725 eV Core-core repulsion = 27307.178448 eV Total energy + Delta-G solvation = -4555.638276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.80677 -40.03568 -39.41858 -38.03708 -36.41489 -36.10074 -34.97139 -32.82582 -31.28565 -31.05533 -30.58983 -29.30678 -27.54073 -26.13182 -24.00653 -23.86972 -22.93749 -22.60624 -21.78359 -20.27436 -19.24466 -17.40327 -17.08235 -16.68028 -16.40921 -16.27174 -16.11225 -15.73577 -15.59199 -15.46848 -15.06563 -14.95901 -14.70024 -14.58116 -14.00409 -13.79722 -13.69756 -13.31715 -13.15948 -12.84001 -12.69810 -12.50108 -12.32045 -12.10985 -11.95083 -11.65668 -11.51252 -11.38615 -11.34838 -11.24055 -11.15761 -10.93235 -10.74957 -10.65618 -10.55801 -10.12870 -9.95564 -9.66756 -9.42917 -8.84566 -8.79872 -8.38464 -8.25555 -7.97468 -6.39515 -4.48820 0.90995 1.31461 2.07552 3.02592 3.08672 3.16262 3.18746 3.43476 3.74641 3.83626 4.06407 4.14963 4.27569 4.82234 4.88770 4.91025 4.99132 5.04862 5.07156 5.16607 5.28786 5.29933 5.38419 5.45209 5.55302 5.59464 5.66654 5.72020 5.82168 5.86910 5.92161 5.98215 6.00687 6.11958 6.23830 6.39128 6.42205 6.52515 6.56817 6.93327 7.00077 7.03310 7.08876 7.13917 7.32580 7.53180 7.81082 8.05938 8.53417 8.71063 9.18758 10.65945 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.002925 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.125213 B = 9569.474306 C =11517.032024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.228 3.772 10 N -0.585 5.585 11 C 0.132 3.868 12 C 0.041 3.959 13 N -0.535 5.535 14 C 0.013 3.987 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.066 3.934 18 C 0.018 3.982 19 C 0.559 3.441 20 O -0.556 6.556 21 C -0.087 4.087 22 C -0.063 4.063 23 C -0.090 4.090 24 C -0.058 4.058 25 Cl -0.060 7.060 26 C 0.089 3.911 27 F -0.132 7.132 28 C -0.101 4.101 29 H 0.269 0.731 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.182 0.818 45 H 0.145 0.855 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.031 -5.109 0.545 6.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.083 0.917 9 C 0.109 3.891 10 N -0.315 5.315 11 C 0.009 3.991 12 C -0.088 4.088 13 N -0.261 5.261 14 C -0.115 4.115 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.011 4.011 18 C -0.110 4.110 19 C 0.346 3.654 20 O -0.436 6.436 21 C -0.091 4.091 22 C -0.081 4.081 23 C -0.109 4.109 24 C -0.086 4.086 25 Cl -0.032 7.032 26 C 0.069 3.931 27 F -0.110 7.110 28 C -0.121 4.121 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.198 0.802 45 H 0.163 0.837 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.270 -5.820 0.543 7.239 hybrid contribution -0.098 1.787 -0.542 1.870 sum 4.172 -4.033 0.001 5.803 Atomic orbital electron populations 1.69901 1.05972 1.27800 1.47736 1.24930 0.94801 0.99144 0.94375 0.86676 0.79769 0.82805 0.79090 1.19760 1.20920 1.20088 1.21397 0.93615 0.90261 1.53339 0.91698 1.19708 0.87627 0.82463 0.99330 1.48135 1.44124 1.34383 1.04866 1.21185 0.93882 0.98603 0.85463 1.22581 0.96892 0.99014 0.90265 1.62181 1.02043 1.59421 1.02472 1.22849 0.97709 0.99817 0.91142 1.22675 0.83314 0.98223 0.97012 1.87955 1.21674 1.77954 1.43189 1.22643 0.93105 0.99929 0.85465 1.22745 0.91230 0.98118 0.98908 1.18101 0.82303 0.81399 0.83605 1.90738 1.32755 1.33469 1.86656 1.19850 0.99936 0.93759 0.95505 1.22444 0.94274 0.96273 0.95121 1.20995 0.97468 0.99267 0.93179 1.21199 1.03163 0.92727 0.91489 1.98363 1.79600 1.91992 1.33201 1.17074 1.01073 0.84343 0.90644 1.91510 1.84973 1.64089 1.70449 1.20992 0.98101 1.00922 0.92057 0.92102 0.93433 0.94568 0.90875 0.90329 0.90707 0.92291 0.93536 0.89284 0.92409 0.88650 0.92379 0.88769 0.89743 0.93922 0.80162 0.83703 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.68 13.29 55.43 0.74 -20.94 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 18.55 29.54 -169.99 -5.02 13.53 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -12.19 6.21 -34.44 -0.21 -12.40 16 8 H 0.06 1.46 6.79 -52.49 -0.36 1.11 16 9 C 0.23 4.78 4.71 -5.20 -0.02 4.76 16 10 N -0.59 -11.08 2.47 -176.19 -0.43 -11.51 16 11 C 0.13 2.24 5.34 -4.04 -0.02 2.22 16 12 C 0.04 0.67 5.05 -3.82 -0.02 0.65 16 13 N -0.54 -7.68 4.73 -234.29 -1.11 -8.78 16 14 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 15 C 0.06 0.75 7.01 37.21 0.26 1.01 16 16 O -0.39 -5.09 10.83 -35.23 -0.38 -5.47 16 17 C 0.07 0.74 7.01 37.21 0.26 1.00 16 18 C 0.02 0.24 5.65 -3.70 -0.02 0.22 16 19 C 0.56 10.82 7.22 -12.35 -0.09 10.73 16 20 O -0.56 -11.77 16.66 5.32 0.09 -11.68 16 21 C -0.09 -1.56 4.89 -104.97 -0.51 -2.07 16 22 C -0.06 -1.11 7.55 -39.19 -0.30 -1.41 16 23 C -0.09 -1.43 9.81 -39.62 -0.39 -1.82 16 24 C -0.06 -0.90 6.33 -39.32 -0.25 -1.15 16 25 Cl -0.06 -0.85 28.60 -51.86 -1.48 -2.33 16 26 C 0.09 1.40 7.27 -39.45 -0.29 1.12 16 27 F -0.13 -2.03 16.83 2.25 0.04 -2.00 16 28 C -0.10 -1.64 9.70 -39.12 -0.38 -2.02 16 29 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.05 1.04 5.46 -51.93 -0.28 0.76 16 31 H 0.04 0.81 7.98 -51.93 -0.41 0.40 16 32 H 0.07 1.17 6.33 -51.93 -0.33 0.84 16 33 H 0.08 1.35 7.49 -51.93 -0.39 0.96 16 34 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 35 H 0.06 1.09 6.59 -51.93 -0.34 0.74 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.11 6.38 -51.92 -0.33 0.78 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.18 3.49 4.92 -52.48 -0.26 3.24 16 45 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 46 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -25.52 390.24 -9.84 -35.36 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.06 Total: 5.37 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.10 Total: 2.57 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.81 Total: -41.24 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.29 Total: -17.15 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -25.52 -9.84 -35.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131601477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.778 kcal (2) G-P(sol) polarization free energy of solvation -25.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds