Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99912 * 2 1 4 4 H 1.48496 * 109.46946 * 240.00159 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46687 * 120.00541 * 3 2 1 7 7 C 1.37879 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99801 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47152 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00051 * 84.09533 * 10 9 7 12 12 C 1.53003 * 109.46693 * 269.99842 * 11 10 9 13 13 N 1.46902 * 109.46573 * 180.02562 * 12 11 10 14 14 C 1.47014 * 111.00179 * 293.62937 * 13 12 11 15 15 C 1.53101 * 109.25909 * 177.60895 * 14 13 12 16 16 O 1.43015 * 109.25546 * 56.85600 * 15 14 13 17 17 C 1.43015 * 113.73791 * 301.32434 * 16 15 14 18 18 C 1.47019 * 110.99640 * 170.00050 * 13 12 11 19 19 C 1.34776 * 120.00297 * 264.09324 * 10 9 7 20 20 O 1.21556 * 120.00376 * 175.13735 * 19 10 9 21 21 C 1.47796 * 119.99734 * 355.13827 * 19 10 9 22 22 C 1.39628 * 120.11757 * 49.76002 * 21 19 10 23 23 C 1.37899 * 119.91548 * 179.97438 * 22 21 19 24 24 C 1.38477 * 120.15722 * 0.02562 * 23 22 21 25 25 Cl 1.73606 * 119.87667 * 179.97438 * 24 23 22 26 26 C 1.38694 * 120.24669 * 359.97438 * 24 23 22 27 27 F 1.35104 * 119.96277 * 179.97438 * 26 24 23 28 28 C 1.38142 * 120.08038 * 359.70441 * 26 24 23 29 29 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47328 * 59.99343 * 9 7 2 31 31 H 1.09007 * 109.46820 * 299.99543 * 9 7 2 32 32 H 1.08999 * 109.47318 * 29.99475 * 11 10 9 33 33 H 1.09006 * 109.47028 * 150.00223 * 11 10 9 34 34 H 1.08999 * 109.47359 * 299.99530 * 12 11 10 35 35 H 1.08992 * 109.47120 * 60.00210 * 12 11 10 36 36 H 1.08999 * 109.50792 * 297.55055 * 14 13 12 37 37 H 1.09010 * 109.50283 * 57.67534 * 14 13 12 38 38 H 1.08999 * 109.50782 * 296.91632 * 15 14 13 39 39 H 1.09002 * 109.53674 * 176.81252 * 15 14 13 40 40 H 1.08996 * 109.50692 * 298.74016 * 17 16 15 41 41 H 1.09000 * 109.54158 * 178.62896 * 17 16 15 42 42 H 1.08997 * 109.50975 * 302.32559 * 18 13 12 43 43 H 1.09004 * 109.50415 * 62.41423 * 18 13 12 44 44 H 1.08003 * 120.04161 * 0.02562 * 22 21 19 45 45 H 1.07997 * 119.91673 * 179.97438 * 23 22 21 46 46 H 1.07995 * 120.07832 * 180.27474 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0027 11 6 2.7783 -4.0857 1.2589 12 6 4.0691 -3.3178 1.5504 13 7 4.6462 -3.7926 2.8151 14 6 3.7789 -3.4497 3.9516 15 6 4.3866 -4.0136 5.2388 16 8 5.7133 -3.5034 5.3970 17 6 6.5853 -3.8194 4.3084 18 6 5.9998 -3.2536 3.0117 19 6 2.5497 -4.2019 -1.1642 20 8 3.4048 -5.0657 -1.1760 21 6 1.8901 -3.7977 -2.4235 22 6 1.7922 -2.4462 -2.7608 23 6 1.1764 -2.0738 -3.9371 24 6 0.6545 -3.0368 -4.7843 25 17 -0.1198 -2.5597 -6.2630 26 6 0.7480 -4.3811 -4.4559 27 9 0.2364 -5.3158 -5.2864 28 6 1.3687 -4.7657 -3.2832 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.0664 -3.9200 2.0676 33 1 2.9985 -5.1504 1.1811 34 1 4.7810 -3.4835 0.7418 35 1 3.8489 -2.2532 1.6282 36 1 3.6964 -2.3659 4.0324 37 1 2.7894 -3.8802 3.7972 38 1 4.4196 -5.1015 5.1795 39 1 3.7772 -3.7139 6.0914 40 1 6.6822 -4.9017 4.2221 41 1 7.5662 -3.3792 4.4873 42 1 6.6317 -3.5409 2.1713 43 1 5.9528 -2.1665 3.0768 44 1 2.1990 -1.6936 -2.1015 45 1 1.1003 -1.0285 -4.1977 46 1 1.4455 -5.8127 -3.0297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131601477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = -106.286783 kcal Electronic energy + Delta-G solvation = -31863.386788 eV Core-core repulsion = 27307.178448 eV Total energy + Delta-G solvation = -4556.208340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.06780 -41.49085 -40.48844 -39.39961 -37.62714 -37.45088 -36.39020 -34.56377 -32.52458 -32.15944 -31.90105 -30.62848 -29.21339 -27.35122 -25.35099 -25.02453 -24.50489 -23.93985 -23.07318 -21.35064 -20.68168 -18.85189 -18.73648 -18.04506 -17.71796 -17.52457 -17.17931 -17.09459 -16.91742 -16.79259 -16.33715 -16.16523 -15.98567 -15.95531 -15.31293 -15.07115 -14.97035 -14.59547 -14.50106 -14.27703 -14.16744 -14.00627 -13.63764 -13.41656 -13.19614 -13.12772 -12.84768 -12.82244 -12.70882 -12.58225 -12.41795 -12.31442 -12.14591 -11.99690 -11.77565 -11.67550 -11.41627 -11.00222 -10.69019 -10.59333 -10.14212 -9.73563 -9.61131 -9.41792 -8.20538 -6.32927 -0.42602 0.00789 0.84210 1.41145 1.45454 1.49356 1.56078 2.00115 2.36268 2.43797 2.81028 2.94544 3.00968 3.09799 3.44362 3.63575 3.85860 3.93435 3.99343 4.03067 4.04047 4.12852 4.21319 4.33161 4.42766 4.43541 4.50373 4.59170 4.60298 4.72122 4.79985 4.80553 4.82945 4.85108 4.91564 5.01237 5.04788 5.07715 5.21841 5.22865 5.56146 5.64116 5.72987 5.91267 5.94101 6.03174 6.17716 6.44420 6.77170 7.12003 7.37375 8.84524 Molecular weight = 370.12amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.002925 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.125213 B = 9569.474306 C =11517.032024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.039 3.961 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.244 3.756 10 N -0.586 5.586 11 C 0.133 3.867 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.012 3.988 15 C 0.067 3.933 16 O -0.405 6.405 17 C 0.068 3.932 18 C 0.016 3.984 19 C 0.559 3.441 20 O -0.576 6.576 21 C -0.102 4.102 22 C -0.070 4.070 23 C -0.087 4.087 24 C -0.055 4.055 25 Cl -0.042 7.042 26 C 0.091 3.909 27 F -0.127 7.127 28 C -0.097 4.097 29 H 0.268 0.732 30 H 0.041 0.959 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.028 0.972 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.030 0.970 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -5.413 0.346 6.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.123 3.877 10 N -0.315 5.315 11 C 0.010 3.990 12 C -0.072 4.072 13 N -0.262 5.262 14 C -0.116 4.116 15 C -0.009 4.009 16 O -0.323 6.323 17 C -0.008 4.008 18 C -0.113 4.113 19 C 0.347 3.653 20 O -0.458 6.458 21 C -0.105 4.105 22 C -0.089 4.089 23 C -0.105 4.105 24 C -0.083 4.083 25 Cl -0.013 7.013 26 C 0.071 3.929 27 F -0.106 7.106 28 C -0.117 4.117 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.135 0.865 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.180 0.820 45 H 0.179 0.821 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.659 -6.128 0.348 7.706 hybrid contribution -0.222 1.840 -0.531 1.928 sum 4.438 -4.288 -0.183 6.173 Atomic orbital electron populations 1.69979 1.06972 1.28203 1.49248 1.25416 0.95218 1.01322 0.94362 0.85928 0.78708 0.80096 0.78949 1.18984 1.21090 1.20629 1.21467 0.93290 0.90809 1.52147 0.92268 1.19393 0.87500 0.82651 0.98112 1.48113 1.43816 1.33866 1.05659 1.21263 0.94264 0.98516 0.84943 1.22295 0.96332 0.97433 0.91171 1.62221 1.02862 1.59196 1.01884 1.22918 0.98099 0.98873 0.91704 1.22768 0.82956 0.98675 0.96521 1.87940 1.22306 1.78323 1.43780 1.22756 0.93591 1.00527 0.83971 1.22851 0.90556 0.97450 1.00400 1.18322 0.81976 0.80940 0.84067 1.90716 1.33649 1.34417 1.87016 1.19772 1.01131 0.94273 0.95362 1.22219 0.95170 0.95731 0.95773 1.21095 0.96737 1.00197 0.92475 1.21244 1.02566 0.92539 0.91984 1.98373 1.79131 1.91852 1.31930 1.17058 1.00774 0.84567 0.90466 1.91524 1.84842 1.63965 1.70234 1.21056 0.97564 1.01182 0.91849 0.92241 0.94121 0.96160 0.89955 0.90272 0.92138 0.94612 0.95326 0.88779 0.91368 0.86723 0.91514 0.86549 0.89087 0.95187 0.81983 0.82128 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.00 13.29 21.45 0.28 -44.72 16 2 C 0.04 1.84 5.46 84.66 0.46 2.30 16 3 Si 0.94 37.99 29.54 68.60 2.03 40.02 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -24.29 6.21 25.60 0.16 -24.13 16 8 H 0.06 2.72 6.79 -2.91 -0.02 2.70 16 9 C 0.24 10.38 4.71 85.63 0.40 10.79 16 10 N -0.59 -22.48 2.47 -829.61 -2.05 -24.52 16 11 C 0.13 4.54 5.34 86.38 0.46 5.01 16 12 C 0.06 1.90 5.05 86.30 0.44 2.33 16 13 N -0.54 -15.22 4.73 -895.16 -4.23 -19.45 16 14 C 0.01 0.32 5.44 86.32 0.47 0.79 16 15 C 0.07 1.44 7.01 72.02 0.50 1.95 16 16 O -0.40 -9.91 10.83 -148.98 -1.61 -11.52 16 17 C 0.07 1.42 7.01 72.02 0.50 1.93 16 18 C 0.02 0.39 5.65 86.32 0.49 0.88 16 19 C 0.56 21.79 7.22 86.77 0.63 22.42 16 20 O -0.58 -24.45 16.66 -3.89 -0.06 -24.52 16 21 C -0.10 -3.64 4.89 -20.09 -0.10 -3.74 16 22 C -0.07 -2.48 7.55 22.53 0.17 -2.31 16 23 C -0.09 -2.65 9.81 22.25 0.22 -2.43 16 24 C -0.06 -1.63 6.33 22.44 0.14 -1.49 16 25 Cl -0.04 -1.09 28.60 -2.72 -0.08 -1.16 16 26 C 0.09 2.75 7.27 22.36 0.16 2.92 16 27 F -0.13 -3.68 16.83 44.97 0.76 -2.93 16 28 C -0.10 -3.06 9.70 22.57 0.22 -2.84 16 29 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 30 H 0.04 1.81 5.46 -2.39 -0.01 1.80 16 31 H 0.02 0.93 7.98 -2.38 -0.02 0.91 16 32 H 0.08 2.63 6.33 -2.39 -0.02 2.62 16 33 H 0.08 2.72 7.49 -2.38 -0.02 2.70 16 34 H 0.06 2.18 8.04 -2.39 -0.02 2.17 16 35 H 0.04 1.36 6.59 -2.39 -0.02 1.34 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 2.30 6.38 -2.38 -0.02 2.29 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 42 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 43 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.16 6.36 4.92 -2.91 -0.01 6.34 16 45 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 46 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -53.25 390.24 1.38 -51.87 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 1.02 Total: 22.57 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.33 Total: 14.37 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -5.99 Total: -88.69 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.68 Total: -36.04 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.76 Total: -2.93 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -53.25 1.38 -51.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131601477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.417 kcal (2) G-P(sol) polarization free energy of solvation -53.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds